Literature DB >> 29666440

Analysis of DNA methylation in cancer: location revisited.

Alexander Koch1, Sophie C Joosten2, Zheng Feng1, Tim C de Ruijter2, Muriel X Draht1, Veerle Melotte1, Kim M Smits1,2, Jurgen Veeck2, James G Herman3, Leander Van Neste1, Wim Van Criekinge4, Tim De Meyer5, Manon van Engeland6.   

Abstract

Changes in DNA methylation in cancer have been heralded as promising targets for the development of powerful diagnostic, prognostic, and predictive biomarkers. Despite the existence of more than 14,000 scientific publications describing DNA methylation-based biomarkers and their clinical associations in cancer, only 14 of these biomarkers have been translated into a commercially available clinical test. Methodological and experimental obstacles are both major causes of this disparity, but the genomic location of a DNA methylation-based biomarker is an intrinsic and essential property that also has an important and often overlooked role. Here, we examine the importance of the location of DNA methylation for the development of cancer biomarkers, and take a detailed look at the genomic location and other relevant characteristics of the various biomarkers with commercially available tests. We also emphasize the value of publicly available databases for the development of DNA methylation-based biomarkers and the importance of accurate reporting of the full methodological details of research findings.

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Year:  2018        PMID: 29666440     DOI: 10.1038/s41571-018-0004-4

Source DB:  PubMed          Journal:  Nat Rev Clin Oncol        ISSN: 1759-4774            Impact factor:   66.675


  163 in total

Review 1.  Redefining the IBDs using genome-scale molecular phenotyping.

Authors:  Terrence S Furey; Praveen Sethupathy; Shehzad Z Sheikh
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2019-05       Impact factor: 46.802

2.  Developmental subtypes assessed by DNA methylation-iPLEX forecast the natural history of chronic lymphocytic leukemia.

Authors:  Brian Giacopelli; Qiuhong Zhao; Amy S Ruppert; Akwasi Agyeman; Christoph Weigel; Yue-Zhong Wu; Madelyn M Gerber; Kari G Rabe; Melissa C Larson; Junyan Lu; James S Blachly; Kerry A Rogers; William G Wierda; Jennifer R Brown; Kanti R Rai; Michael Keating; Laura Z Rassenti; Thomas J Kipps; Thorsten Zenz; Tait D Shanafelt; Neil E Kay; Lynne V Abruzzo; Kevin R Coombes; Jennifer A Woyach; John C Byrd; Christopher C Oakes
Journal:  Blood       Date:  2019-07-10       Impact factor: 22.113

Review 3.  Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors.

Authors:  Judith F Kribelbauer; Xiang-Jun Lu; Remo Rohs; Richard S Mann; Harmen J Bussemaker
Journal:  J Mol Biol       Date:  2019-11-02       Impact factor: 5.469

Review 4.  Relationships among smoking, oxidative stress, inflammation, macromolecular damage, and cancer.

Authors:  Andrew W Caliri; Stella Tommasi; Ahmad Besaratinia
Journal:  Mutat Res Rev Mutat Res       Date:  2021-01-11       Impact factor: 5.657

Review 5.  The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals.

Authors:  Yulong Li; Yujing Xu; Tongxu Liu; Hengyi Chang; Xiaojun Yang
Journal:  Mamm Genome       Date:  2021-04-15       Impact factor: 2.957

6.  MiR-206 promotes extracellular matrix accumulation and relieves infantile hemangioma through targeted inhibition of DNMT3A.

Authors:  Minliang Wu; Yong Chen; Ling Feng; Haiying Dai; Shuo Fang; Jianguo Xu
Journal:  Cell Cycle       Date:  2021-05-04       Impact factor: 4.534

7.  Discovery of Candidate DNA Methylation Cancer Driver Genes.

Authors:  Heng Pan; Loïc Renaud; Ronan Chaligne; Johannes Bloehdorn; Eugen Tausch; Daniel Mertens; Anna Maria Fink; Kirsten Fischer; Chao Zhang; Doron Betel; Andreas Gnirke; Marcin Imielinski; Jérôme Moreaux; Michael Hallek; Alexander Meissner; Stephan Stilgenbauer; Catherine J Wu; Olivier Elemento; Dan A Landau
Journal:  Cancer Discov       Date:  2021-05-10       Impact factor: 39.397

Review 8.  Epigenetic modifications of Klotho expression in kidney diseases.

Authors:  Jinkun Xia; Wangsen Cao
Journal:  J Mol Med (Berl)       Date:  2021-02-06       Impact factor: 4.599

Review 9.  Deciphering the genetic code of DNA methylation.

Authors:  Mengchi Wang; Vu Ngo; Wei Wang
Journal:  Brief Bioinform       Date:  2021-09-02       Impact factor: 11.622

Review 10.  Landscape of EBV-positive gastric cancer.

Authors:  Motonobu Saito; Koji Kono
Journal:  Gastric Cancer       Date:  2021-07-22       Impact factor: 7.370

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