| Literature DB >> 35572804 |
Zhili Hu1,2,3,4, Yingjie Liu1,2,3,4, Jibao Wang5, Zhefeng Meng6, Sequoia I Leuba7, Jie Wei1,2,3,4, Xing Duan5, Zhenxing Chu1,2,3,4, Min Chen8, Hong Shang1,2,3,4, Junjie Xu1,2,3,4.
Abstract
Background: Accurate identification of molecular transmission clusters (MTCs) and understanding the dynamics of human immunodeficiency virus (HIV) transmission are necessary to develop targeted interventions to prevent HIV transmission. We evaluated the characteristics of antiretroviral therapy-naïve individuals who belonged to HIV-1 MTCs in the China-Myanmar border region to inform targeted effective HIV intervention.Entities:
Keywords: HIV; cross-border; molecular epidemiology; phylogenetic analysis; subtype
Year: 2022 PMID: 35572804 PMCID: PMC9094042 DOI: 10.3389/fmed.2021.693915
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
FIGURE 1Study site location at the China-Myanmar border. The black dotted line with a gray shadow shows the border between China and Myanmar, and the light purple area indicates the region of Yunnan Province. The red box indicates our study site. Magnified images of boxed areas are shown in the upper right corners.
Demographic and clinical characteristics on participants, stratified by nationality (N = 900).
| Characteristics | Total ( | China ( | Myanmar ( |
|
| |||
| Median (IQR) | 28 (23, 39) | 30 (24, 42) | 22 (20, 24) |
| ≤ 25 | 384 (42.7) | 249 (33.2) | 135 (90.6) |
| 26–50 | 428 (47.6) | 417 (55.5) | 11 (7.4) |
| > 50 | 88 (9.8) | 85 (11.3) | 3 (2.0) |
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| |||
| Male | 539 (59.9) | 449 (59.8) | 90 (60.4) |
| Female | 361 (40.1) | 302 (40.2) | 59 (39.6) |
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| |||
| Han | 394 (43.8) | 346 (46.1) | 48 (32.2) |
| Non-Han | 506 (56.2) | 405 (53.9) | 101 (67.8) |
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| Illiterate | 170 (18.9) | 104 (13.8) | 66 (44.3) |
| Primary school | 344 (38.2) | 295 (39.3) | 49 (32.9) |
| Junior middle school | 280 (31.1) | 253 (33.7) | 27 (18.1) |
| High school and above | 106 (11.8) | 99 (13.2) | 7 (4.7) |
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| Peasant | 635 (70.6) | 531 (70.7) | 104 (69.8) |
| Other | 265 (29.4) | 220 (29.3) | 45 (30.2) |
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| Single | 436 (48.4) | 352 (46.9) | 84 (56.4) |
| Married | 464 (51.6) | 399 (53.1) | 65 (43.6) |
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| Heterosexual | 685 (76.1) | 585 (77.9) | 100 (67.1) |
| Homosexual | 42 (4.7) | 38 (5.1) | 4 (2.7) |
| Injection drug use | 156 (17.3) | 113 (15.0) | 43 (28.9) |
| Other | 17 (1.9) | 15 (2.0) | 2 (1.3) |
|
| |||
| Median (IQR) | 440 (324, 617) | 439 (330, 617) | 451 (316, 617) |
| <200 | 57 (6.3) | 47 (6.3) | 10 (6.7) |
| 200–349 | 212 (23.6) | 173 (23.0) | 39 (26.2) |
| ≥350 | 631 (70.1) | 531 (70.7) | 100 (67.1) |
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| CRF01_AE | 166 (18.4) | 136 (18.1) | 30 (20.1) |
| CRF07_BC | 72 (8.0) | 68 (9.1) | 4 (2.7) |
| CRF08_BC | 180 (20.0) | 175 (23.3) | 5 (3.4) |
| BCı | 176 (19.6) | 118 (15.7) | 58 (38.9) |
| C | 257 (28.6) | 210 (28.0) | 47 (31.5) |
| B | 49 (5.4) | 44 (5.9) | 5 (3.4) |
*Includes unmarried, divorced and widowed.
FIGURE 2Neighbor-joining phylogenetic tree of the whole pol gene. The neighbor-joining phylogenetic tree was constructed using MEGA 7.0 with 1,000 bootstrap replicates. The nucleotide substitution model was the Kimura 2-parameter model. The line with different colors indicates different subtypes/recombinant forms of HIV-1. Purple, green, orange, red, blue and magenta lines denote subtype C, CRF_08BC, BC, CRF_01AE, CRF_07BC, and subtype B, respectively.
Demographic and clinical characteristics of individuals included in the MTCs stratified by nationality (N = 110).
| Characteristics | Overall ( | Chinese ( | Burmese ( | |
|
| ||||
| ≤25 | 76 (69.1) | 41 (57.7) | 35 (89.7) | 0.002 |
| 26–50 | 28 (25.5) | 24 (33.8) | 4 (10.3) | |
| >50 | 6 (5.5) | 6 (8.5) | 0 (0.0) | |
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| Male | 63 (57.3) | 39 (54.9) | 24 (61.5) | 0.503 |
| Female | 47 (42.7) | 32 (45.1) | 15 (38.5) | |
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| Han | 50 (45.5) | 35 (49.3) | 15 (38.5) | 0.275 |
| Non-Han | 60 (54.5) | 36 (50.7) | 24 (61.5) | |
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| Illiterate | 22 (20.0) | 6 (8.5) | 16 (41.0) | <0.001 |
| Primary school | 30 (27.3) | 21 (29.6) | 9 (23.1) | |
| Junior middle school | 44 (40.0) | 35 (49.3) | 9 (23.1) | |
| High school and above | 14 (12.7) | 9 (12.7) | 5 (12.8) | |
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| Peasant | 71 (64.5) | 44 (62.0) | 27 (69.2) | 0.446 |
| Other | 39 (35.5) | 27 (38.0) | 12 (30.8) | |
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| Single | 60 (54.5) | 36 (50.7) | 24 (61.5) | 0.275 |
| Married | 50 (45.5) | 35 (49.3) | 15 (38.5) | |
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| Heterosexual | 74 (67.3) | 51 (71.8) | 23 (59.0) | 0.021 |
| Homosexual | 11 (10.0) | 9 (12.7) | 2 (5.1) | |
| Injection drug use | 23 (20.9) | 9 (12.7) | 14 (35.9) | |
| Other | 2 (1.8) | 2 (2.8) | 0 (0.0) | |
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| <200 | 12 (10.9) | 7 (9.9) | 5 (12.8) | 0.634 |
| 200–349 | 30 (27.3) | 18 (25.4) | 12 (30.8) | |
| ≥350 | 68 (61.8) | 46 (64.8) | 22 (56.4) | |
|
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| CRF01_AE | 14 (12.7) | 6 (8.5) | 8 (20.5) | 0.001 |
| CRF07_BC | 22 (20.0) | 20 (28.2) | 2 (5.1) | |
| CRF08_BC | 6 (5.5) | 2 (2.8) | 4 (10.3) | |
| BCı | 24 (21.8) | 11 (15.5) | 13 (33.3) | |
| C | 42 (38.2) | 31 (43.7) | 11 (28.2) | |
| B | 2 (1.8) | 1 (1.4) | 1 (2.6) |
*Includes unmarried, divorced and widowed.
FIGURE 3Clustering of HIV-1 sequences within the biggest molecular transmission clusters for subtypes C. The tree was constructed using MEGA 7.0 with 1,000 bootstrap replicates. Molecular transmission clusters (MTC) were defined as clusters with two or more sequences and the pairwise gene distance less than or equal to 0.03 with bootstrap values ≥ 80%. The scale bar indicates 0.5% nucleotide sequence divergence. The black nodes represent Burmese. The thick line indicates individuals in clusters. The thin line indicates individuals out of clusters.
FIGURE 4Clustering of HIV-1 sequences for other subtypes. The tree was constructed using MEGA 7.0 with 1,000 bootstrap replicates. Molecular transmission clusters (MTC) were defined as clusters with two or more sequences and the pairwise gene distance less than or equal to 0.03 with bootstrap values ≥ 80%. The scale bar indicates 0.5% nucleotide sequence divergence. The black nodes represent Burmese. The thick line indicates individuals in clusters. The thin line indicates individuals out of clusters. (A), subtype BC; (B), subtype CRF_07BC; (C), subtype CRF_01AE; (D), subtype CRF_08BC; (E), subtype B.
Univariable and multivariable logistic regression of factors associated with being grouped with a molecular transmission cluster (MTC).
| Characteristics | Non-clustered ( | Clustered ( | Univariable analysis | Multivariable analysis | ||
| OR (95% CI) | aOR (95% CI) | |||||
|
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| ≤ 25 | 308 (39.0) | 76 (69.1) | Ref. | Ref. | ||
| 26–50 | 400 (50.6) | 28 (25.5) | 0.28 (0.18, 0.45) | <0.001 | 0.34 (0.20, 0.58) | <0.001 |
| > 50 | 82 (10.4) | 6 (5.5) | 0.30 (0.12, 0.71) | 0.006 | 0.40 (0.16, 1.01) | 0.052 |
|
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| Male | 476 (60.3) | 63 (57.3) | Ref. | |||
| Female | 314 (39.7) | 47 (42.7) | 1.13 (0.76, 1.69) | 0.550 | ||
|
| ||||||
| Han | 344 (43.5) | 50 (45.4) | Ref. | |||
| Non-Han | 446 (56.5) | 60 (54.5) | 0.93 (0.62, 1.38) | 0.705 | ||
|
| ||||||
| China | 680 (86.1) | 71 (64.5) | Ref. | Ref. | ||
| Myanmar | 110 (13.9) | 39 (35.5) | 3.40 (2.19, 5.27) | <0.001 | 2.24 (1.33, 3.79) | 0.003 |
|
| ||||||
| Illiterate | 148 (18.7) | 22 (20.0) | Ref. | |||
| Primary school | 314 (39.7) | 30 (27.3) | 0.64 (0.36, 1.15) | 0.138 | ||
| Junior middle school | 236 (29.9) | 44 (40.0) | 1.25 (0.72, 2.18) | 0.421 | ||
| High school and above | 92 (11.6) | 14 (12.7) | 1.02 (0.50, 2.10) | 0.949 | ||
|
| ||||||
| Peasant | 564 (71.4) | 71 (64.5) | Ref. | |||
| Other | 226 (28.6) | 39 (35.5) | 1.37 (0.90, 2.09) | 0.141 | ||
|
| ||||||
| Single | 376 (47.6) | 60 (54.5) | Ref. | |||
| Married | 414 (52.4) | 50 (45.5) | 0.76 (0.51, 1.13) | 0.173 | ||
|
| ||||||
| Heterosexual | 611 (77.3) | 74 (67.3) | Ref. | |||
| Homosexual | 31 (3.9) | 11 (10.0) | 2.93 (1.41, 6.07) | 0.004 | ||
| Injection drug use | 133 (16.8) | 23 (20.9) | 1.43 (0.86, 2.36) | 0.166 | ||
| Other | 15 (1.9) | 2 (1.8) | 1.10 (0.25, 4.91) | 0.900 | ||
|
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| < 200 | 45 (5.7) | 12 (10.9) | 2.21 (1.13, 4.38) | 0.023 | 2.86 (1.34, 6.11) | 0.007 |
| 200–349 | 182 (23.0) | 30 (27.3) | 1.36 (0.86, 2.16) | 0.186 | 1.46 (0.89, 2.39) | 0.137 |
| ≥ 350 | 563 (71.3) | 68 (61.8) | Ref. | Ref. | ||
|
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| CRF01_AE | 152 (19.4) | 14 (12.7) | Ref. | Ref. | ||
| CRF07_BC | 50 (6.3) | 22 (20.0) | 4.78 (2.27, 10.04) | <0.001 | 7.88 (3.55, 17.52) | <0.001 |
| CRF08_BC | 174 (22.0) | 6 (5.5) | 0.37 (0.14, 1.00) | 0.050 | 0.68 (0.25, 1.88) | 0.460 |
| BCı | 152 (19.2) | 24 (21.8) | 1.71 (0.85, 3.44) | 0.129 | 1.49 (0.72, 3.08) | 0.283 |
| C | 215 (27.2) | 42 (38.2) | 2.12 (1.12, 4.02) | 0.021 | 2.38 (1.23, 4.62) | 0.010 |
| B | 47 (5.9) | 2 (1.8) | 0.46 (0.10, 2.11) | 0.319 | 0.63 (0.13, 2.96) | 0.559 |
*Includes unmarried, divorced and widowed.
aOR: adjusted sex, ethnicity, education, occupation, and marital status.