Literature DB >> 35562633

Deep Reinforcement Learning with Automated Label Extraction from Clinical Reports Accurately Classifies 3D MRI Brain Volumes.

Joseph Nathaniel Stember1, Hrithwik Shalu2.   

Abstract

Image classification is probably the most fundamental task in radiology artificial intelligence. To reduce the burden of acquiring and labeling data sets, we employed a two-pronged strategy. We automatically extracted labels from radiology reports in Part 1. In Part 2, we used the labels to train a data-efficient reinforcement learning (RL) classifier. We applied the approach to a small set of patient images and radiology reports from our institution. For Part 1, we trained sentence-BERT (SBERT) on 90 radiology reports. In Part 2, we used the labels from the trained SBERT to train an RL-based classifier. We trained the classifier on a training set of [Formula: see text] images. We tested on a separate collection of [Formula: see text] images. For comparison, we also trained and tested a supervised deep learning (SDL) classification network on the same set of training and testing images using the same labels. Part 1: The trained SBERT model improved from 82 to [Formula: see text] accuracy. Part 2: Using Part 1's computed labels, SDL quickly overfitted the small training set. Whereas SDL showed the worst possible testing set accuracy of 50%, RL achieved [Formula: see text] testing set accuracy, with a [Formula: see text]-value of [Formula: see text]. We have shown the proof-of-principle application of automated label extraction from radiological reports. Additionally, we have built on prior work applying RL to classification using these labels, extending from 2D slices to entire 3D image volumes. RL has again demonstrated a remarkable ability to train effectively, in a generalized manner, and based on small training sets.
© 2022. The Author(s) under exclusive licence to Society for Imaging Informatics in Medicine.

Entities:  

Keywords:  3D MRI brain volumes; Automated label extraction; Deep reinforcement learning

Mesh:

Year:  2022        PMID: 35562633      PMCID: PMC9582186          DOI: 10.1007/s10278-022-00644-5

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.903


  15 in total

1.  Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms.

Authors: 
Journal:  Neural Comput       Date:  1998-09-15       Impact factor: 2.026

Review 2.  The present and future of deep learning in radiology.

Authors:  Luca Saba; Mainak Biswas; Venkatanareshbabu Kuppili; Elisa Cuadrado Godia; Harman S Suri; Damodar Reddy Edla; Tomaž Omerzu; John R Laird; Narendra N Khanna; Sophie Mavrogeni; Athanasios Protogerou; Petros P Sfikakis; Vijay Viswanathan; George D Kitas; Andrew Nicolaides; Ajay Gupta; Jasjit S Suri
Journal:  Eur J Radiol       Date:  2019-03-02       Impact factor: 3.528

3.  Validation of a fully automated liver segmentation algorithm using multi-scale deep reinforcement learning and comparison versus manual segmentation.

Authors:  David J Winkel; Thomas J Weikert; Hanns-Christian Breit; Guillaume Chabin; Eli Gibson; Tobias J Heye; Dorin Comaniciu; Daniel T Boll
Journal:  Eur J Radiol       Date:  2020-03-05       Impact factor: 3.528

4.  Sequential conditional reinforcement learning for simultaneous vertebral body detection and segmentation with modeling the spine anatomy.

Authors:  Dong Zhang; Bo Chen; Shuo Li
Journal:  Med Image Anal       Date:  2020-10-10       Impact factor: 8.545

5.  Deep Reinforcement Learning for Weakly-Supervised Lymph Node Segmentation in CT Images.

Authors:  Zhe Li; Yong Xia
Journal:  IEEE J Biomed Health Inform       Date:  2021-03-05       Impact factor: 5.772

Review 6.  Deep Learning in Radiology.

Authors:  Morgan P McBee; Omer A Awan; Andrew T Colucci; Comeron W Ghobadi; Nadja Kadom; Akash P Kansagra; Srini Tridandapani; William F Auffermann
Journal:  Acad Radiol       Date:  2018-03-30       Impact factor: 3.173

7.  Evaluating reinforcement learning agents for anatomical landmark detection.

Authors:  Amir Alansary; Ozan Oktay; Yuanwei Li; Loic Le Folgoc; Benjamin Hou; Ghislain Vaillant; Konstantinos Kamnitsas; Athanasios Vlontzos; Ben Glocker; Bernhard Kainz; Daniel Rueckert
Journal:  Med Image Anal       Date:  2019-02-14       Impact factor: 8.545

8.  Building Large-Scale Quantitative Imaging Databases with Multi-Scale Deep Reinforcement Learning: Initial Experience with Whole-Body Organ Volumetric Analyses.

Authors:  David J Winkel; Hanns-Christian Breit; Thomas J Weikert; Bram Stieltjes
Journal:  J Digit Imaging       Date:  2021-01-19       Impact factor: 4.056

9.  Edge-Sensitive Left Ventricle Segmentation Using Deep Reinforcement Learning.

Authors:  Jingjing Xiong; Lai-Man Po; Kwok Wai Cheung; Pengfei Xian; Yuzhi Zhao; Yasar Abbas Ur Rehman; Yujia Zhang
Journal:  Sensors (Basel)       Date:  2021-03-29       Impact factor: 3.576

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