Literature DB >> 35553646

Capture Rate of V(D)J Sequencing for Minimal Residual Disease Detection in Multiple Myeloma.

Malin Hultcrantz1,2, Even H Rustad3, Venkata Yellapantula1, Allison Jacob4, Theresia Akhlaghi1, Neha Korde1, Sham Mailankody1, Alexander M Lesokhin1, Hani Hassoun1, Eric L Smith1, Oscar B Lahoud5, Heather J Landau5, Gunjan L Shah5, Michael Scordo5, David J Chung5, Sergio Giralt5, Elli Papaemmanuil3, Ola Landgren6.   

Abstract

PURPOSE: Minimal residual disease (MRD) negativity is a strong predictor for outcome in multiple myeloma. To assess V(D)J clonotype capture using the updated Adaptive next-generation sequencing (NGS) MRD assay in a clinical setting, we analyzed baseline and follow-up samples from patients with multiple myeloma who achieved deep clinical responses. EXPERIMENTAL
DESIGN: A total of 159 baseline and 31 follow-up samples from patients with multiple myeloma were sequenced using the NGS MRD assay. Baseline samples were also sequenced using a targeted multiple myeloma panel (myTYPE). We estimated ORs with 95% confidence intervals (CI) for clonotypes detection using logistic regression.
RESULTS: The V(D)J clonotype capture rate was 93% in baseline samples with detectable genomic aberrations, indicating presence of tumor DNA, assessed through myTYPE. myTYPE-positive samples had significantly higher V(D)J clonotype detection rates in univariate (OR, 7.3; 95% CI, 2.8-22.6) and multivariate analysis (OR, 4.4; 95% CI, 1.4-16.9; P = 0.016). Higher disease burden was associated with higher probability of V(D)J clonotype capture, meanwhile no such association was found for age, gender, or type of heavy or light immunoglobulin chain. All V(D)J clonotypes detected at baseline were detected in MRD-positive samples indicating that the V(D)J clonotypes remained stable and did not undergo further rearrangements during follow-up. Of the 31 posttreatment samples, 12 were MRD-negative using the NGS MRD assay.
CONCLUSIONS: NGS for V(D)J rearrangements in multiple myeloma offers a reliable and sensitive method for MRD tracking with high detection rates in the clinical setting. ©2022 American Association for Cancer Research.

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Year:  2022        PMID: 35553646      PMCID: PMC9179004          DOI: 10.1158/1078-0432.CCR-20-2995

Source DB:  PubMed          Journal:  Clin Cancer Res        ISSN: 1078-0432            Impact factor:   13.801


  48 in total

1.  Characterization of IGH locus breakpoints in multiple myeloma indicates a subset of translocations appear to occur in pregerminal center B cells.

Authors:  Brian A Walker; Christopher P Wardell; David C Johnson; Martin F Kaiser; Dil B Begum; Nasrin B Dahir; Fiona M Ross; Faith E Davies; David Gonzalez; Gareth J Morgan
Journal:  Blood       Date:  2013-02-22       Impact factor: 22.113

2.  Daratumumab, Lenalidomide, and Dexamethasone for Multiple Myeloma.

Authors:  Meletios A Dimopoulos; Albert Oriol; Hareth Nahi; Jesus San-Miguel; Nizar J Bahlis; Saad Z Usmani; Neil Rabin; Robert Z Orlowski; Mieczyslaw Komarnicki; Kenshi Suzuki; Torben Plesner; Sung-Soo Yoon; Dina Ben Yehuda; Paul G Richardson; Hartmut Goldschmidt; Donna Reece; Steen Lisby; Nushmia Z Khokhar; Lisa O'Rourke; Christopher Chiu; Xiang Qin; Mary Guckert; Tahamtan Ahmadi; Philippe Moreau
Journal:  N Engl J Med       Date:  2016-10-06       Impact factor: 91.245

3.  Stability and uniqueness of clonal immunoglobulin CDR3 sequences for MRD tracking in multiple myeloma.

Authors:  Even H Rustad; Kristine Misund; Elsa Bernard; Eivind Coward; Venkata D Yellapantula; Malin Hultcrantz; Caleb Ho; Dickran Kazandjian; Neha Korde; Sham Mailankody; Jonathan J Keats; Theresia Akhlaghi; Aaron D Viny; David J Mayman; Kaitlin Carroll; Minal Patel; Christopher A Famulare; Davine Hofste Op Bruinink; Kasey Hutt; Austin Jacobsen; Ying Huang; Jeffrey E Miller; Francesco Maura; Elli Papaemmanuil; Anders Waage; Maria E Arcila; Ola Landgren
Journal:  Am J Hematol       Date:  2019-10-21       Impact factor: 10.047

4.  cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data.

Authors:  David Jones; Keiran M Raine; Helen Davies; Patrick S Tarpey; Adam P Butler; Jon W Teague; Serena Nik-Zainal; Peter J Campbell
Journal:  Curr Protoc Bioinformatics       Date:  2016-12-08

Review 5.  Minimal residual disease detection of myeloma using sequencing of immunoglobulin heavy chain gene VDJ regions.

Authors:  Caleb Ho; Maria E Arcila
Journal:  Semin Hematol       Date:  2018-02-23       Impact factor: 3.851

Review 6.  International Myeloma Working Group consensus criteria for response and minimal residual disease assessment in multiple myeloma.

Authors:  Shaji Kumar; Bruno Paiva; Kenneth C Anderson; Brian Durie; Ola Landgren; Philippe Moreau; Nikhil Munshi; Sagar Lonial; Joan Bladé; Maria-Victoria Mateos; Meletios Dimopoulos; Efstathios Kastritis; Mario Boccadoro; Robert Orlowski; Hartmut Goldschmidt; Andrew Spencer; Jian Hou; Wee Joo Chng; Saad Z Usmani; Elena Zamagni; Kazuyuki Shimizu; Sundar Jagannath; Hans E Johnsen; Evangelos Terpos; Anthony Reiman; Robert A Kyle; Pieter Sonneveld; Paul G Richardson; Philip McCarthy; Heinz Ludwig; Wenming Chen; Michele Cavo; Jean-Luc Harousseau; Suzanne Lentzsch; Jens Hillengass; Antonio Palumbo; Alberto Orfao; S Vincent Rajkumar; Jesus San Miguel; Herve Avet-Loiseau
Journal:  Lancet Oncol       Date:  2016-08       Impact factor: 41.316

7.  Baseline identification of clonal V(D)J sequences for DNA-based minimal residual disease detection in multiple myeloma.

Authors:  Even H Rustad; Malin Hultcrantz; Venkata D Yellapantula; Theresia Akhlaghi; Caleb Ho; Maria E Arcila; Mikhail Roshal; Akshar Patel; Denise Chen; Sean M Devlin; Austin Jacobsen; Ying Huang; Jeffrey E Miller; Elli Papaemmanuil; Ola Landgren
Journal:  PLoS One       Date:  2019-03-22       Impact factor: 3.240

8.  Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy.

Authors:  Jens G Lohr; Petar Stojanov; Scott L Carter; Peter Cruz-Gordillo; Michael S Lawrence; Daniel Auclair; Carrie Sougnez; Birgit Knoechel; Joshua Gould; Gordon Saksena; Kristian Cibulskis; Aaron McKenna; Michael A Chapman; Ravid Straussman; Joan Levy; Louise M Perkins; Jonathan J Keats; Steven E Schumacher; Mara Rosenberg; Gad Getz; Todd R Golub
Journal:  Cancer Cell       Date:  2014-01-13       Impact factor: 31.743

9.  DELLY: structural variant discovery by integrated paired-end and split-read analysis.

Authors:  Tobias Rausch; Thomas Zichner; Andreas Schlattl; Adrian M Stütz; Vladimir Benes; Jan O Korbel
Journal:  Bioinformatics       Date:  2012-09-15       Impact factor: 6.937

10.  Mutational Spectrum, Copy Number Changes, and Outcome: Results of a Sequencing Study of Patients With Newly Diagnosed Myeloma.

Authors:  Brian A Walker; Eileen M Boyle; Christopher P Wardell; Alex Murison; Dil B Begum; Nasrin M Dahir; Paula Z Proszek; David C Johnson; Martin F Kaiser; Lorenzo Melchor; Lauren I Aronson; Matthew Scales; Charlotte Pawlyn; Fabio Mirabella; John R Jones; Annamaria Brioli; Aneta Mikulasova; David A Cairns; Walter M Gregory; Ana Quartilho; Mark T Drayson; Nigel Russell; Gordon Cook; Graham H Jackson; Xavier Leleu; Faith E Davies; Gareth J Morgan
Journal:  J Clin Oncol       Date:  2015-08-17       Impact factor: 44.544

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