Literature DB >> 35546631

Genome-wide tandem repeat expansions contribute to schizophrenia risk.

Anne S Bassett1,2,3, Ryan K C Yuen4,5, Bahareh A Mojarad6, Worrawat Engchuan6,7, Brett Trost6,7, Ian Backstrom6, Yue Yin6, Bhooma Thiruvahindrapuram6,7, Linda Pallotto6, Aleksandra Mitina6, Mahreen Khan6,8, Giovanna Pellecchia6,7, Bushra Haque6,8, Keyi Guo6, Tracy Heung9,10, Gregory Costain6,8,11, Stephen W Scherer6,7,8,12, Christian R Marshall13, Christopher E Pearson6,8.   

Abstract

Tandem repeat expansions (TREs) can cause neurological diseases but their impact in schizophrenia is unclear. Here we analyzed genome sequences of adults with schizophrenia and found that they have a higher burden of TREs that are near exons and rare in the general population, compared with non-psychiatric controls. These TREs are disproportionately found at loci known to be associated with schizophrenia from genome-wide association studies, in individuals with clinically-relevant genetic variants at other schizophrenia loci, and in families where multiple individuals have schizophrenia. We showed that rare TREs in schizophrenia may impact synaptic functions by disrupting the splicing process of their associated genes in a loss-of-function manner. Our findings support the involvement of genome-wide rare TREs in the polygenic nature of schizophrenia.
© 2022. The Author(s).

Entities:  

Year:  2022        PMID: 35546631     DOI: 10.1038/s41380-022-01575-x

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  38 in total

Review 1.  30 years of repeat expansion disorders: What have we learned and what are the remaining challenges?

Authors:  Christel Depienne; Jean-Louis Mandel
Journal:  Am J Hum Genet       Date:  2021-04-02       Impact factor: 11.025

2.  Evidence for anticipation in schizophrenia.

Authors:  A S Bassett; W G Honer
Journal:  Am J Hum Genet       Date:  1994-05       Impact factor: 11.025

3.  Heritability of Schizophrenia and Schizophrenia Spectrum Based on the Nationwide Danish Twin Register.

Authors:  Rikke Hilker; Dorte Helenius; Birgitte Fagerlund; Axel Skytthe; Kaare Christensen; Thomas M Werge; Merete Nordentoft; Birte Glenthøj
Journal:  Biol Psychiatry       Date:  2017-09-01       Impact factor: 13.382

4.  Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects.

Authors:  Christian R Marshall; Daniel P Howrigan; Daniele Merico; Bhooma Thiruvahindrapuram; Wenting Wu; Douglas S Greer; Danny Antaki; Aniket Shetty; Peter A Holmans; Dalila Pinto; Madhusudan Gujral; William M Brandler; Dheeraj Malhotra; Zhouzhi Wang; Karin V Fuentes Fajarado; Michelle S Maile; Stephan Ripke; Ingrid Agartz; Margot Albus; Madeline Alexander; Farooq Amin; Joshua Atkins; Silviu A Bacanu; Richard A Belliveau; Sarah E Bergen; Marcelo Bertalan; Elizabeth Bevilacqua; Tim B Bigdeli; Donald W Black; Richard Bruggeman; Nancy G Buccola; Randy L Buckner; Brendan Bulik-Sullivan; William Byerley; Wiepke Cahn; Guiqing Cai; Murray J Cairns; Dominique Campion; Rita M Cantor; Vaughan J Carr; Noa Carrera; Stanley V Catts; Kimberley D Chambert; Wei Cheng; C Robert Cloninger; David Cohen; Paul Cormican; Nick Craddock; Benedicto Crespo-Facorro; James J Crowley; David Curtis; Michael Davidson; Kenneth L Davis; Franziska Degenhardt; Jurgen Del Favero; Lynn E DeLisi; Dimitris Dikeos; Timothy Dinan; Srdjan Djurovic; Gary Donohoe; Elodie Drapeau; Jubao Duan; Frank Dudbridge; Peter Eichhammer; Johan Eriksson; Valentina Escott-Price; Laurent Essioux; Ayman H Fanous; Kai-How Farh; Martilias S Farrell; Josef Frank; Lude Franke; Robert Freedman; Nelson B Freimer; Joseph I Friedman; Andreas J Forstner; Menachem Fromer; Giulio Genovese; Lyudmila Georgieva; Elliot S Gershon; Ina Giegling; Paola Giusti-Rodríguez; Stephanie Godard; Jacqueline I Goldstein; Jacob Gratten; Lieuwe de Haan; Marian L Hamshere; Mark Hansen; Thomas Hansen; Vahram Haroutunian; Annette M Hartmann; Frans A Henskens; Stefan Herms; Joel N Hirschhorn; Per Hoffmann; Andrea Hofman; Hailiang Huang; Masashi Ikeda; Inge Joa; Anna K Kähler; René S Kahn; Luba Kalaydjieva; Juha Karjalainen; David Kavanagh; Matthew C Keller; Brian J Kelly; James L Kennedy; Yunjung Kim; James A Knowles; Bettina Konte; Claudine Laurent; Phil Lee; S Hong Lee; Sophie E Legge; Bernard Lerer; Deborah L Levy; Kung-Yee Liang; Jeffrey Lieberman; Jouko Lönnqvist; Carmel M Loughland; Patrik K E Magnusson; Brion S Maher; Wolfgang Maier; Jacques Mallet; Manuel Mattheisen; Morten Mattingsdal; Robert W McCarley; Colm McDonald; Andrew M McIntosh; Sandra Meier; Carin J Meijer; Ingrid Melle; Raquelle I Mesholam-Gately; Andres Metspalu; Patricia T Michie; Lili Milani; Vihra Milanova; Younes Mokrab; Derek W Morris; Bertram Müller-Myhsok; Kieran C Murphy; Robin M Murray; Inez Myin-Germeys; Igor Nenadic; Deborah A Nertney; Gerald Nestadt; Kristin K Nicodemus; Laura Nisenbaum; Annelie Nordin; Eadbhard O'Callaghan; Colm O'Dushlaine; Sang-Yun Oh; Ann Olincy; Line Olsen; F Anthony O'Neill; Jim Van Os; Christos Pantelis; George N Papadimitriou; Elena Parkhomenko; Michele T Pato; Tiina Paunio; Diana O Perkins; Tune H Pers; Olli Pietiläinen; Jonathan Pimm; Andrew J Pocklington; John Powell; Alkes Price; Ann E Pulver; Shaun M Purcell; Digby Quested; Henrik B Rasmussen; Abraham Reichenberg; Mark A Reimers; Alexander L Richards; Joshua L Roffman; Panos Roussos; Douglas M Ruderfer; Veikko Salomaa; Alan R Sanders; Adam Savitz; Ulrich Schall; Thomas G Schulze; Sibylle G Schwab; Edward M Scolnick; Rodney J Scott; Larry J Seidman; Jianxin Shi; Jeremy M Silverman; Jordan W Smoller; Erik Söderman; Chris C A Spencer; Eli A Stahl; Eric Strengman; Jana Strohmaier; T Scott Stroup; Jaana Suvisaari; Dragan M Svrakic; Jin P Szatkiewicz; Srinivas Thirumalai; Paul A Tooney; Juha Veijola; Peter M Visscher; John Waddington; Dermot Walsh; Bradley T Webb; Mark Weiser; Dieter B Wildenauer; Nigel M Williams; Stephanie Williams; Stephanie H Witt; Aaron R Wolen; Brandon K Wormley; Naomi R Wray; Jing Qin Wu; Clement C Zai; Rolf Adolfsson; Ole A Andreassen; Douglas H R Blackwood; Elvira Bramon; Joseph D Buxbaum; Sven Cichon; David A Collier; Aiden Corvin; Mark J Daly; Ariel Darvasi; Enrico Domenici; Tõnu Esko; Pablo V Gejman; Michael Gill; Hugh Gurling; Christina M Hultman; Nakao Iwata; Assen V Jablensky; Erik G Jönsson; Kenneth S Kendler; George Kirov; Jo Knight; Douglas F Levinson; Qingqin S Li; Steven A McCarroll; Andrew McQuillin; Jennifer L Moran; Bryan J Mowry; Markus M Nöthen; Roel A Ophoff; Michael J Owen; Aarno Palotie; Carlos N Pato; Tracey L Petryshen; Danielle Posthuma; Marcella Rietschel; Brien P Riley; Dan Rujescu; Pamela Sklar; David St Clair; James T R Walters; Thomas Werge; Patrick F Sullivan; Michael C O'Donovan; Stephen W Scherer; Benjamin M Neale; Jonathan Sebat
Journal:  Nat Genet       Date:  2016-11-21       Impact factor: 38.330

5.  Analysis of copy number variations at 15 schizophrenia-associated loci.

Authors:  Elliott Rees; James T R Walters; Lyudmila Georgieva; Anthony R Isles; Kimberly D Chambert; Alexander L Richards; Gerwyn Mahoney-Davies; Sophie E Legge; Jennifer L Moran; Steven A McCarroll; Michael C O'Donovan; Michael J Owen; George Kirov
Journal:  Br J Psychiatry       Date:  2013-12-05       Impact factor: 9.319

6.  De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability.

Authors:  S E McCarthy; J Gillis; M Kramer; J Lihm; S Yoon; Y Berstein; M Mistry; P Pavlidis; R Solomon; E Ghiban; E Antoniou; E Kelleher; C O'Brien; G Donohoe; M Gill; D W Morris; W R McCombie; A Corvin
Journal:  Mol Psychiatry       Date:  2014-04-29       Impact factor: 15.992

7.  ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data.

Authors:  Egor Dolzhenko; Mark F Bennett; Phillip A Richmond; Brett Trost; Sai Chen; Joke J F A van Vugt; Charlotte Nguyen; Giuseppe Narzisi; Vladimir G Gainullin; Andrew M Gross; Bryan R Lajoie; Ryan J Taft; Wyeth W Wasserman; Stephen W Scherer; Jan H Veldink; David R Bentley; Ryan K C Yuen; Melanie Bahlo; Michael A Eberle
Journal:  Genome Biol       Date:  2020-04-28       Impact factor: 13.583

8.  Exome sequencing in schizophrenia-affected parent-offspring trios reveals risk conferred by protein-coding de novo mutations.

Authors:  Daniel P Howrigan; Samuel A Rose; Kaitlin E Samocha; Menachem Fromer; Felecia Cerrato; Wei J Chen; Claire Churchhouse; Kimberly Chambert; Sharon D Chandler; Mark J Daly; Ashley Dumont; Giulio Genovese; Hai-Gwo Hwu; Nan Laird; Jack A Kosmicki; Jennifer L Moran; Cheryl Roe; Tarjinder Singh; Shi-Heng Wang; Stephen V Faraone; Stephen J Glatt; Steven A McCarroll; Ming Tsuang; Benjamin M Neale
Journal:  Nat Neurosci       Date:  2020-01-13       Impact factor: 24.884

9.  Genome sequencing broadens the range of contributing variants with clinical implications in schizophrenia.

Authors:  Bahareh A Mojarad; Yue Yin; Roozbeh Manshaei; Ian Backstrom; Gregory Costain; Tracy Heung; Daniele Merico; Christian R Marshall; Anne S Bassett; Ryan K C Yuen
Journal:  Transl Psychiatry       Date:  2021-02-01       Impact factor: 6.222

10.  Genome-wide detection of tandem DNA repeats that are expanded in autism.

Authors:  Brett Trost; Worrawat Engchuan; Charlotte M Nguyen; Bhooma Thiruvahindrapuram; Egor Dolzhenko; Ian Backstrom; Mila Mirceta; Bahareh A Mojarad; Yue Yin; Alona Dov; Induja Chandrakumar; Tanya Prasolava; Natalie Shum; Omar Hamdan; Giovanna Pellecchia; Jennifer L Howe; Joseph Whitney; Eric W Klee; Saurabh Baheti; David G Amaral; Evdokia Anagnostou; Mayada Elsabbagh; Bridget A Fernandez; Ny Hoang; M E Suzanne Lewis; Xudong Liu; Calvin Sjaarda; Isabel M Smith; Peter Szatmari; Lonnie Zwaigenbaum; David Glazer; Dean Hartley; A Keith Stewart; Michael A Eberle; Nozomu Sato; Christopher E Pearson; Stephen W Scherer; Ryan K C Yuen
Journal:  Nature       Date:  2020-07-27       Impact factor: 69.504

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