Literature DB >> 27869829

Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects.

Christian R Marshall1, Daniel P Howrigan2,3, Daniele Merico1, Bhooma Thiruvahindrapuram1, Wenting Wu4,5, Douglas S Greer4,5, Danny Antaki4,5, Aniket Shetty4,5, Peter A Holmans6,7, Dalila Pinto8,9, Madhusudan Gujral4,5, William M Brandler4,5, Dheeraj Malhotra4,5,10, Zhouzhi Wang1, Karin V Fuentes Fajarado4,5, Michelle S Maile4,5, Stephan Ripke2,3, Ingrid Agartz11,12,13, Margot Albus14, Madeline Alexander15, Farooq Amin16,17, Joshua Atkins18,19, Silviu A Bacanu20, Richard A Belliveau3, Sarah E Bergen3,21, Marcelo Bertalan22,23, Elizabeth Bevilacqua3, Tim B Bigdeli20, Donald W Black24, Richard Bruggeman25, Nancy G Buccola26, Randy L Buckner27,28,29, Brendan Bulik-Sullivan2,3, William Byerley30, Wiepke Cahn31, Guiqing Cai8,32, Murray J Cairns18,33,34, Dominique Campion35, Rita M Cantor36, Vaughan J Carr33,37, Noa Carrera6, Stanley V Catts33,38, Kimberley D Chambert3, Wei Cheng39, C Robert Cloninger40, David Cohen41, Paul Cormican42, Nick Craddock6,7, Benedicto Crespo-Facorro43,44, James J Crowley45, David Curtis46,47, Michael Davidson48, Kenneth L Davis8, Franziska Degenhardt49,50, Jurgen Del Favero51, Lynn E DeLisi52,53, Dimitris Dikeos54, Timothy Dinan55, Srdjan Djurovic11,56, Gary Donohoe42,57, Elodie Drapeau8, Jubao Duan58,59, Frank Dudbridge60, Peter Eichhammer61, Johan Eriksson62,63,64, Valentina Escott-Price6, Laurent Essioux65, Ayman H Fanous66,67,68,69, Kai-How Farh2, Martilias S Farrell45, Josef Frank70, Lude Franke71, Robert Freedman72, Nelson B Freimer73, Joseph I Friedman8, Andreas J Forstner49,50, Menachem Fromer2,3,74,75, Giulio Genovese3, Lyudmila Georgieva6, Elliot S Gershon59,76, Ina Giegling77,78, Paola Giusti-Rodríguez45, Stephanie Godard79, Jacqueline I Goldstein2,80, Jacob Gratten81, Lieuwe de Haan82, Marian L Hamshere6, Mark Hansen83, Thomas Hansen22,23, Vahram Haroutunian8,84,85, Annette M Hartmann77, Frans A Henskens33,34,86, Stefan Herms49,50,87, Joel N Hirschhorn80,88,89, Per Hoffmann49,50,87, Andrea Hofman49,50, Hailiang Huang2,80, Masashi Ikeda90, Inge Joa91, Anna K Kähler21, René S Kahn31, Luba Kalaydjieva92,93, Juha Karjalainen71, David Kavanagh6, Matthew C Keller94, Brian J Kelly34, James L Kennedy95,96,97, Yunjung Kim45, James A Knowles69,98, Bettina Konte77, Claudine Laurent15,99, Phil Lee2,3,75, S Hong Lee81, Sophie E Legge6, Bernard Lerer100, Deborah L Levy53,101, Kung-Yee Liang102, Jeffrey Lieberman103, Jouko Lönnqvist104, Carmel M Loughland33,34, Patrik K E Magnusson21, Brion S Maher105, Wolfgang Maier106, Jacques Mallet107, Manuel Mattheisen23,108,109,110, Morten Mattingsdal11,111, Robert W McCarley52,53, Colm McDonald112, Andrew M McIntosh113,114, Sandra Meier70, Carin J Meijer82, Ingrid Melle11,115, Raquelle I Mesholam-Gately53,116, Andres Metspalu117, Patricia T Michie33,118, Lili Milani117, Vihra Milanova119, Younes Mokrab120, Derek W Morris42,57, Bertram Müller-Myhsok121,122,123, Kieran C Murphy124, Robin M Murray125, Inez Myin-Germeys126, Igor Nenadic127, Deborah A Nertney128, Gerald Nestadt129, Kristin K Nicodemus130, Laura Nisenbaum131, Annelie Nordin132, Eadbhard O'Callaghan133, Colm O'Dushlaine3, Sang-Yun Oh134, Ann Olincy72, Line Olsen22,23, F Anthony O'Neill135, Jim Van Os126,125, Christos Pantelis33,136, George N Papadimitriou54, Elena Parkhomenko8, Michele T Pato69,98, Tiina Paunio137, Diana O Perkins138, Tune H Pers80,89,139, Olli Pietiläinen137,140, Jonathan Pimm47, Andrew J Pocklington6, John Powell125, Alkes Price80,141, Ann E Pulver129, Shaun M Purcell74, Digby Quested142, Henrik B Rasmussen22,23, Abraham Reichenberg8,85, Mark A Reimers20, Alexander L Richards6,7, Joshua L Roffman28,29, Panos Roussos74,143, Douglas M Ruderfer6,74, Veikko Salomaa63, Alan R Sanders58,59, Adam Savitz144, Ulrich Schall33,34, Thomas G Schulze70,145, Sibylle G Schwab146, Edward M Scolnick3, Rodney J Scott18,33,147, Larry J Seidman53,116, Jianxin Shi148, Jeremy M Silverman8,149, Jordan W Smoller3,75, Erik Söderman13, Chris C A Spencer150, Eli A Stahl74,80, Eric Strengman31,151, Jana Strohmaier70, T Scott Stroup103, Jaana Suvisaari104, Dragan M Svrakic40, Jin P Szatkiewicz45, Srinivas Thirumalai152, Paul A Tooney18,33,34, Juha Veijola153,154, Peter M Visscher81, John Waddington155, Dermot Walsh156, Bradley T Webb20, Mark Weiser48, Dieter B Wildenauer157, Nigel M Williams6, Stephanie Williams45, Stephanie H Witt70, Aaron R Wolen20, Brandon K Wormley20, Naomi R Wray81, Jing Qin Wu18,33, Clement C Zai95,96, Rolf Adolfsson132, Ole A Andreassen11,115, Douglas H R Blackwood113, Elvira Bramon158, Joseph D Buxbaum8,32,85,159, Sven Cichon49,50,87,160, David A Collier120,161, Aiden Corvin42, Mark J Daly2,3,80, Ariel Darvasi162, Enrico Domenici10,163, Tõnu Esko80,88,89,117, Pablo V Gejman58,59, Michael Gill42, Hugh Gurling47, Christina M Hultman21, Nakao Iwata90, Assen V Jablensky33,93,157,164, Erik G Jönsson11,13, Kenneth S Kendler20, George Kirov6, Jo Knight95,96,97, Douglas F Levinson15, Qingqin S Li144, Steven A McCarroll3,88, Andrew McQuillin47, Jennifer L Moran3, Bryan J Mowry81,128, Markus M Nöthen49,50, Roel A Ophoff31,36,73, Michael J Owen6,7, Aarno Palotie3,75,140, Carlos N Pato69,98, Tracey L Petryshen3,29,53,165, Danielle Posthuma166,167,168, Marcella Rietschel70, Brien P Riley20, Dan Rujescu77,78, Pamela Sklar74,85,143, David St Clair169, James T R Walters6, Thomas Werge22,23,170, Patrick F Sullivan21,45,138, Michael C O'Donovan6,7, Stephen W Scherer1,171, Benjamin M Neale2,3,75,80, Jonathan Sebat4,5,172.   

Abstract

Copy number variants (CNVs) have been strongly implicated in the genetic etiology of schizophrenia (SCZ). However, genome-wide investigation of the contribution of CNV to risk has been hampered by limited sample sizes. We sought to address this obstacle by applying a centralized analysis pipeline to a SCZ cohort of 21,094 cases and 20,227 controls. A global enrichment of CNV burden was observed in cases (odds ratio (OR) = 1.11, P = 5.7 × 10-15), which persisted after excluding loci implicated in previous studies (OR = 1.07, P = 1.7 × 10-6). CNV burden was enriched for genes associated with synaptic function (OR = 1.68, P = 2.8 × 10-11) and neurobehavioral phenotypes in mouse (OR = 1.18, P = 7.3 × 10-5). Genome-wide significant evidence was obtained for eight loci, including 1q21.1, 2p16.3 (NRXN1), 3q29, 7q11.2, 15q13.3, distal 16p11.2, proximal 16p11.2 and 22q11.2. Suggestive support was found for eight additional candidate susceptibility and protective loci, which consisted predominantly of CNVs mediated by nonallelic homologous recombination.

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Year:  2016        PMID: 27869829      PMCID: PMC5737772          DOI: 10.1038/ng.3725

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  37 in total

Review 1.  CNVs: harbingers of a rare variant revolution in psychiatric genetics.

Authors:  Dheeraj Malhotra; Jonathan Sebat
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

2.  Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism.

Authors:  Guy Horev; Jacob Ellegood; Jason P Lerch; Young-Eun E Son; Lakshmi Muthuswamy; Hannes Vogel; Abba M Krieger; Andreas Buja; R Mark Henkelman; Michael Wigler; Alea A Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  High frequencies of de novo CNVs in bipolar disorder and schizophrenia.

Authors:  Dheeraj Malhotra; Shane McCarthy; Jacob J Michaelson; Vladimir Vacic; Katherine E Burdick; Seungtai Yoon; Sven Cichon; Aiden Corvin; Sydney Gary; Elliot S Gershon; Michael Gill; Maria Karayiorgou; John R Kelsoe; Olga Krastoshevsky; Verena Krause; Ellen Leibenluft; Deborah L Levy; Vladimir Makarov; Abhishek Bhandari; Anil K Malhotra; Francis J McMahon; Markus M Nöthen; James B Potash; Marcella Rietschel; Thomas G Schulze; Jonathan Sebat
Journal:  Neuron       Date:  2011-12-22       Impact factor: 17.173

4.  Analysis of high-resolution HapMap of DTNBP1 (Dysbindin) suggests no consistency between reported common variant associations and schizophrenia.

Authors:  Mousumi Mutsuddi; Derek W Morris; Skye G Waggoner; Mark J Daly; Edward M Scolnick; Pamela Sklar
Journal:  Am J Hum Genet       Date:  2006-10-03       Impact factor: 11.025

5.  Microdeletions of 3q29 confer high risk for schizophrenia.

Authors:  Jennifer Gladys Mulle; Anne F Dodd; John A McGrath; Paula S Wolyniec; Adele A Mitchell; Amol C Shetty; Nara L Sobreira; David Valle; M Katharine Rudd; Glen Satten; David J Cutler; Ann E Pulver; Stephen T Warren
Journal:  Am J Hum Genet       Date:  2010-08-13       Impact factor: 11.025

6.  Rare chromosomal deletions and duplications increase risk of schizophrenia.

Authors: 
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

Review 7.  Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits.

Authors:  J R Lupski
Journal:  Trends Genet       Date:  1998-10       Impact factor: 11.639

8.  De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia.

Authors:  G Kirov; A J Pocklington; P Holmans; D Ivanov; M Ikeda; D Ruderfer; J Moran; K Chambert; D Toncheva; L Georgieva; D Grozeva; M Fjodorova; R Wollerton; E Rees; I Nikolov; L N van de Lagemaat; A Bayés; E Fernandez; P I Olason; Y Böttcher; N H Komiyama; M O Collins; J Choudhary; K Stefansson; H Stefansson; S G N Grant; S Purcell; P Sklar; M C O'Donovan; M J Owen
Journal:  Mol Psychiatry       Date:  2011-11-15       Impact factor: 15.992

9.  GeneMANIA prediction server 2013 update.

Authors:  Khalid Zuberi; Max Franz; Harold Rodriguez; Jason Montojo; Christian Tannus Lopes; Gary D Bader; Quaid Morris
Journal:  Nucleic Acids Res       Date:  2013-07       Impact factor: 16.971

10.  Microduplications of 16p11.2 are associated with schizophrenia.

Authors:  Shane E McCarthy; Vladimir Makarov; George Kirov; Anjene M Addington; Jon McClellan; Seungtai Yoon; Diana O Perkins; Diane E Dickel; Mary Kusenda; Olga Krastoshevsky; Verena Krause; Ravinesh A Kumar; Detelina Grozeva; Dheeraj Malhotra; Tom Walsh; Elaine H Zackai; Paige Kaplan; Jaya Ganesh; Ian D Krantz; Nancy B Spinner; Patricia Roccanova; Abhishek Bhandari; Kevin Pavon; B Lakshmi; Anthony Leotta; Jude Kendall; Yoon-Ha Lee; Vladimir Vacic; Sydney Gary; Lilia M Iakoucheva; Timothy J Crow; Susan L Christian; Jeffrey A Lieberman; T Scott Stroup; Terho Lehtimäki; Kaija Puura; Chad Haldeman-Englert; Justin Pearl; Meredith Goodell; Virginia L Willour; Pamela Derosse; Jo Steele; Layla Kassem; Jessica Wolff; Nisha Chitkara; Francis J McMahon; Anil K Malhotra; James B Potash; Thomas G Schulze; Markus M Nöthen; Sven Cichon; Marcella Rietschel; Ellen Leibenluft; Vlad Kustanovich; Clara M Lajonchere; James S Sutcliffe; David Skuse; Michael Gill; Louise Gallagher; Nancy R Mendell; Nick Craddock; Michael J Owen; Michael C O'Donovan; Tamim H Shaikh; Ezra Susser; Lynn E Delisi; Patrick F Sullivan; Curtis K Deutsch; Judith Rapoport; Deborah L Levy; Mary-Claire King; Jonathan Sebat
Journal:  Nat Genet       Date:  2009-10-25       Impact factor: 38.330

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  318 in total

1.  The Sex Chromosome Hypothesis of Schizophrenia: Alive, Dead, or Forgotten? A Commentary and Review.

Authors:  William K Bache; Lynn E DeLisi
Journal:  Mol Neuropsychiatry       Date:  2018-08-20

2.  CHRFAM7A gene expression in schizophrenia: clinical correlates and the effect of antipsychotic treatment.

Authors:  Sunil V Kalmady; Rimjhim Agrawal; Deepthi Venugopal; Venkataram Shivakumar; Anekal C Amaresha; Sri Mahavir Agarwal; Manjula Subbanna; Ashwini Rajasekaran; Janardhanan C Narayanaswamy; Monojit Debnath; Ganesan Venkatasubramanian
Journal:  J Neural Transm (Vienna)       Date:  2018-01-05       Impact factor: 3.575

Review 3.  Epigenetic Factors in Schizophrenia: Mechanisms and Experimental Approaches.

Authors:  Melanie Föcking; Benjamin Doyle; Nayla Munawar; Eugene T Dillon; David Cotter; Gerard Cagney
Journal:  Mol Neuropsychiatry       Date:  2019-02-15

4.  Enhancing Psychosis-Spectrum Nosology Through an International Data Sharing Initiative.

Authors:  Anna R Docherty; Eduardo Fonseca-Pedrero; Martin Debbané; Raymond C K Chan; Richard J Linscott; Katherine G Jonas; David C Cicero; Melissa J Green; Leonard J Simms; Oliver Mason; David Watson; Ulrich Ettinger; Monika Waszczuk; Alexander Rapp; Phillip Grant; Roman Kotov; Colin G DeYoung; Camilo J Ruggero; Nicolas R Eaton; Robert F Krueger; Christopher Patrick; Christopher Hopwood; F Anthony O'Neill; David H Zald; Christopher C Conway; Daniel E Adkins; Irwin D Waldman; Jim van Os; Patrick F Sullivan; John S Anderson; Andrey A Shabalin; Scott R Sponheim; Stephan F Taylor; Rachel G Grazioplene; Silviu A Bacanu; Tim B Bigdeli; Corinna Haenschel; Dolores Malaspina; Diane C Gooding; Kristin Nicodemus; Frauke Schultze-Lutter; Neus Barrantes-Vidal; Christine Mohr; William T Carpenter; Alex S Cohen
Journal:  Schizophr Bull       Date:  2018-10-15       Impact factor: 9.306

5.  Genetic variability in scaffolding proteins and risk for schizophrenia and autism-spectrum disorders: a systematic review.

Authors:  Jordi Soler; Lourdes Fañanás; Mara Parellada; Marie-Odile Krebs; Guy A Rouleau; Mar Fatjó-Vilas
Journal:  J Psychiatry Neurosci       Date:  2018-05-28       Impact factor: 6.186

6.  Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.

Authors:  Carolina Nobre; Nils Gehlenborg; Hilary Coon; Alexander Lex
Journal:  IEEE Trans Vis Comput Graph       Date:  2018-03-06       Impact factor: 4.579

7.  Neurons with Complex Karyotypes Are Rare in Aged Human Neocortex.

Authors:  William D Chronister; Ian E Burbulis; Margaret B Wierman; Matthew J Wolpert; Mark F Haakenson; Aiden C B Smith; Joel E Kleinman; Thomas M Hyde; Daniel R Weinberger; Stefan Bekiranov; Michael J McConnell
Journal:  Cell Rep       Date:  2019-01-22       Impact factor: 9.423

8.  The interplay between genetics, cognition and schizophrenia.

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Journal:  Brain       Date:  2019-02-01       Impact factor: 13.501

9.  Genomic Dissection of Bipolar Disorder and Schizophrenia, Including 28 Subphenotypes.

Authors: 
Journal:  Cell       Date:  2018-06-14       Impact factor: 41.582

Review 10.  Implications of germline copy-number variations in psychiatric disorders: review of large-scale genetic studies.

Authors:  Masahiro Nakatochi; Itaru Kushima; Norio Ozaki
Journal:  J Hum Genet       Date:  2020-09-21       Impact factor: 3.172

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