| Literature DB >> 35541088 |
Jingru Zhang1, Wenzuo Li1, Jianbo Cheng1, Zhenbo Liu1, Qingzhong Li1.
Abstract
MP2/aug-cc-pVTZ calculations have been performed on π-hole triel- and chalcogen-bonded complexes involving a heteroaromatic compound. These complexes are very stable with large interaction energy up to -47 kcal mol-1. The sp2-hybridized nitrogen atom engages in a stronger π-hole bond than the sp-hybridized species although the former has smaller negative electrostatic potential. The sp2-hybridized oxygen atom in 1,4-benzoquinone is a weaker electron donor in the π-hole bond than the sp2-hybridized nitrogen atom. The π-hole triel bond is stronger than the π-hole chalcogen bond. A clear structural deformation is found for the triel or chalcogen donor molecule in these π-hole-bonded complexes. The triel bond exhibits partially covalent interaction, whereas the chalcogen bond exhibits covalent interaction in the SO3 complexes of pyrazine and pyridine derivatives with a sp2-hybridized nitrogen atom. Intermolecular charge transfer (>0.2e) occurs to a considerable extent in these complexes. In ternary complexes involving an aromatic compound, wherein a triel bond and a chalcogen bond coexist, both the interactions are weakened or strengthened when the central aromatic molecule acts as a double Lewis base or plays a dual role of both a base and an acid. Both electrostatic and charge transfer effects have important contributions toward changes in the strength of both interactions. This journal is © The Royal Society of Chemistry.Entities:
Year: 2018 PMID: 35541088 PMCID: PMC9083131 DOI: 10.1039/c8ra04106g
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 3.361
Fig. 1MEP maps of the monomers. Color ranges, in eV, are as follows: red, greater than 0.0210; yellow, between 0.0210 and −0.0028; green, between −0.0028 and −0.0150; and blue, less than −0.0150.
Fig. 2Optimized structures of the triel-bonded binary complexes. Distances are given in Å.
Interaction energy (ΔEint, kcal mol−1), binding energy (ΔEb, kcal mol−1), deformation energy (DE, kcal mol−1), relative Gibbs free energy (ΔG, kcal mol−1), and angle (α, deg) in the triel-bonded binary systemsa
| Dyads | Δ | Δ | DE | Δ | Δ |
|
|---|---|---|---|---|---|---|
| 2 + 5(ZB-1) | −46.81 | −34.42 | 14.03 | −30.51 | −20.67 | 104.8 |
| 2 + 6(ZB-2) | −33.03 | −21.60 | 12.70 | −18.30 | −7.69 | 104.4 |
| 2 + 7(ZB-3) | −27.44 | −17.79 | 11.15 | −13.99 | −3.20 | 103.1 |
| 3 + 5(ZB-4) | −44.52 | −23.08 | 24.47 | −21.24 | −14.28 | 104.2 |
| 3 + 6(ZB-5) | −8.79 | −7.04 | 3.10 | −6.35 | −0.07 | 95.4 |
| 3 + 7(ZB-6) | −25.40 | −10.82 | 17.28 | −9.40 | −0.51 | 102.0 |
| 1 + 8(ZB-7) | −42.06 | −29.50 | 14.17 | −24.86 | −15.29 | 104.4 |
| 1 + 9(ZB-8) | −41.70 | −29.04 | 14.29 | −24.46 | −14.83 | 104.5 |
| 1 + 10(ZB-9) | −37.38 | −19.28 | 20.33 | −15.81 | −9.11 | 103.7 |
| 1 + 11(ZB-10) | −37.53 | −19.22 | 20.53 | −15.77 | −9.00 | 103.8 |
ΔEZPEb is the binding energy corrected for zero-point vibrational energy (ZPE). α is the average of the three N⋯B–H/F angles in the former six dyads but the average of the two N⋯B–H/F angles and one N⋯B–C angle in the latter four dyads.
Electron density (ρBCP, au), Laplacian (∇2ρBCP, au), and total electron energy density (HBCP, au) at the bond critical point as well as charge transfer (CT, e) in the triel-bonded binary systemsa
| Dyads |
| ∇2 |
| CT |
|---|---|---|---|---|
| ZB-1 | 0.109 | 0.315 | −0.074 | 0.3223 |
| ZB-2 | 0.098 | 0.064 | −0.005 | 0.3133 |
| ZB-3 | 0.072 | 0.564 | −0.018 | 0.2578 |
| ZB-4 | 0.106 | 0.315 | −0.074 | 0.2917 |
| ZB-5 | 0.026 | 0.064 | −0.005 | 0.0488 |
| ZB-6 | 0.073 | 0.317 | −0.038 | 0.2129 |
| ZB-7 | 0.103 | 0.503 | −0.061 | 0.3662 |
| ZB-8 | 0.103 | 0.502 | −0.061 | 0.3659 |
| ZB-9 | 0.104 | 0.351 | −0.070 | 0.3324 |
| ZB-10 | 0.104 | 0.349 | −0.070 | 0.3324 |
CT is the sum of the NBO charge on all the atoms of the electron donor molecule.
Fig. 3Optimized structures of the chalcogen-bonded binary complexes. Distances are given in Å.
Interaction energy (ΔEint, kcal mol−1), binding energy (ΔEb, kcal mol−1), deformation energy (DE, kcal mol−1), relative Gibbs free energy (ΔG, kcal mol−1), and angle (α, deg) in the chalcogen-bonded binary systemsa
| Dyads | Δ | Δ | DE | Δ | Δ |
|
|---|---|---|---|---|---|---|
| 4 + 5(CB-1) | −29.93 | −21.81 | 8.12 | −19.96 | −8.04 | 97.4 |
| 4 + 6(CB-2) | −8.67 | −8.11 | 0.56 | −7.31 | −0.28 | 92.1 |
| 4 + 7(CB-3) | −12.25 | −10.04 | 2.21 | −8.91 | 0.28 | 93.8 |
| 4 + 8(CB-4) | −33.48 | −24.47 | 9.01 | −22.55 | −10.39 | 97.8 |
| 4 + 9(CB-5) | −9.26 | −8.57 | 0.69 | −7.74 | −0.33 | 92.3 |
| 4 + 10(CB-6) | −32.61 | −23.77 | 8.84 | −21.90 | −9.71 | 97.7 |
| 4 + 10(CB-7) | −9.12 | −8.47 | 0.65 | −7.65 | −0.27 | 92.2 |
α is the average of the three N/O⋯S–O angles.
Electron density (ρBCP, au), Laplacian (∇2ρBCP, au), and total electron energy density (HBCP, au) at the bond critical point as well as charge transfer (CT, e) in the chalcogen-bonded binary systemsa
| Dyads |
| ∇2 |
| CT |
|---|---|---|---|---|
| CB-1 | 0.1173 | −0.1305 | −0.0810 | 0.2535 |
| CB-2 | 0.0311 | 0.0875 | −0.0011 | 0.0227 |
| CB-3 | 0.0506 | 0.1020 | −0.0086 | 0.0719 |
| CB-4 | 0.1240 | −0.1656 | −0.0905 | 0.2781 |
| CB-5 | 0.0331 | 0.0889 | −0.0016 | 0.0268 |
| CB-6 | 0.1223 | −0.1563 | −0.0880 | 0.2715 |
| CB-7 | 0.0326 | 0.0887 | −0.0016 | 0.0258 |
CT is the sum of the NBO charge on all the atoms of the electron donor molecule.
Fig. 4Optimized structures of the ternary complexes. Distances are given in Å.
Total interaction energy (ΔEtotal), interaction energies (ΔE) of triel bond (ZB) and chalcogen bond (CB), and cooperative energy (Ecoop) in the ternary systems. All are in kcal mol−1a
| Triads | Δ | Δ | Δ | Δ | ΔΔ | ΔΔ |
|
|---|---|---|---|---|---|---|---|
| ZB-CB-1 | −71.56 | −42.05 | −24.56 | 0.25 | 4.76 | 5.37 | 4.93(6.9) |
| ZB-CB-2 | −40.93 | −32.36 | −8.05 | 0.01 | 0.67 | 0.62 | 0.76(1.9) |
| ZB-CB-3 | −35.58 | −25.28 | −9.77 | 0.01 | 2.16 | 2.48 | 4.10(11.5) |
| ZB-CB-4 | −63.16 | −35.97 | −22.61 | 0.43 | 8.55 | 7.32 | 10.86(17.2) |
| ZB-CB-5 | −17.24 | −7.53 | −8.28 | 0.01 | 1.26 | 0.39 | 0.21(1.2) |
| ZB-CB-6 | −31.97 | −20.93 | −9.32 | 0.02 | 4.47 | 2.93 | 5.66(17.7) |
| ZB-CB-7 | −82.60 | −47.52 | −39.69 | −0.20 | −5.46 | −6.21 | −6.86(8.3) |
| ZB-CB-8 | −52.77 | −43.21 | −10.49 | −0.03 | −1.51 | −1.23 | −1.78(3.3) |
| ZB-CB-9 | −76.32 | −42.30 | −37.70 | −0.21 | −4.92 | −5.09 | −6.12(8.0) |
| ZB-CB-10 | −48.13 | −38.79 | −10.29 | −0.03 | −1.26 | −1.17 | −1.45(3.0) |
ΔΔE is the difference of ΔE in the triad relative to the corresponding dyad. ΔEfar is the interaction energy between two unbonded molecules in the ternary system. Data in parentheses denote the percentage of Ecoop to ΔEtotal.
Electron densities (ρ, au) at the triel bond (ZB) and chalcogen bond (CB) BCPs in the triads and their changes (Δρ, au) relative to the corresponding dyads
| Triads |
| Δ |
| Δ |
|---|---|---|---|---|
| ZB-CB-1 | 0.1064 | −0.0028 | 0.1060 | −0.0113 |
| ZB-CB-2 | 0.1040 | −0.0001 | 0.0290 | −0.0021 |
| ZB-CB-3 | 0.0746 | −0.0027 | 0.0401 | −0.0105 |
| ZB-CB-4 | 0.0959 | −0.0097 | 0.1004 | −0.0169 |
| ZB-CB-5 | 0.0221 | −0.0041 | 0.0298 | −0.0013 |
| ZB-CB-6 | 0.0651 | −0.0084 | 0.0381 | −0.0126 |
| ZB-CB-7 | 0.1054 | 0.0026 | 0.1356 | 0.0116 |
| ZB-CB-8 | 0.1035 | 0.0007 | 0.0388 | 0.0057 |
| ZB-CB-9 | 0.1070 | 0.0032 | 0.1320 | 0.0098 |
| ZB-CB-10 | 0.1046 | 0.0008 | 0.0369 | 0.0043 |
The most negative MEP (Vmin) on the free N/O atom in the dyads and the most positive MEP (Vmax) on the free B atom in the dyads as well as their change (ΔV) relative to the corresponding monomers; all values are in eV
| Dyads |
| Δ | Dyads |
| Δ |
|---|---|---|---|---|---|
| ZB-1 | −0.031 | 0.018 | CB-4 | 0.0917 | 0.0352 |
| ZB-2 | −0.045 | 0.008 | CB-5 | 0.0680 | 0.0097 |
| ZB-3 | −0.036 | 0.014 | CB-6 | 0.1091 | 0.0313 |
| ZB-4 | −0.024 | 0.025 | CB-7 | 0.0892 | 0.0086 |
| ZB-5 | −0.048 | 0.005 | |||
| ZB-6 | −0.032 | 0.018 | |||
| ZB-7 | −0.071 | −0.015 | |||
| ZB-8 | −0.072 | −0.011 | |||
| ZB-9 | −0.065 | −0.013 | |||
| ZB-10 | −0.068 | −0.010 | |||
| CB-1 | −0.020 | 0.029 | |||
| CB-2 | −0.048 | 0.005 | |||
| CB-3 | −0.038 | 0.012 |
Charge transfer (CT, e) of the triel bond (ZB) and chalcogen bond (CB) in the triads as well as its change (ΔCT, e) relative to the corresponding dyads
| Triads | CTZB | ΔCTZB | CTCB | ΔCTCB |
|---|---|---|---|---|
| ZB-CB-1 | 0.2995 | −0.0228 | 0.2150 | −0.0385 |
| ZB-CB-2 | 0.3095 | −0.0038 | 0.0187 | −0.0040 |
| ZB-CB-3 | 0.2492 | −0.0086 | 0.0451 | −0.0268 |
| ZB-CB-4 | 0.2640 | −0.0277 | 0.1976 | −0.0559 |
| ZB-CB-5 | 0.0343 | −0.0145 | 0.0202 | −0.0025 |
| ZB-CB-6 | 0.1882 | −0.0247 | 0.0405 | −0.0314 |
| ZB-CB-7 | 0.3797 | 0.0135 | 0.3161 | 0.0380 |
| ZB-CB-8 | 0.3695 | 0.0036 | 0.0391 | 0.0123 |
| ZB-CB-9 | 0.3454 | 0.0130 | 0.3044 | 0.0329 |
| ZB-CB-10 | 0.3356 | 0.0032 | 0.0348 | 0.0090 |