Literature DB >> 35536398

Backbone and ILV side-chain NMR resonance assignments of the catalytic domain of human deubiquitinating enzyme USP7.

Gabrielle Valles1,2, Alexandra Pozhidaeva1, Dmitry M Korzhnev3, Irina Bezsonova4.   

Abstract

Ubiquitin specific protease 7 (USP7) is a deubiquitinating enzyme, which removes ubiquitin tag from numerous protein substrates involved in diverse cellular processes such as cell cycle regulation, apoptosis and DNA damage response. USP7 affects stability, interaction network and cellular localization of its cellular and viral substrates by controlling their ubiquitination status. The large 41 kDa catalytic domain of USP7 harbors the active site of the enzyme. Here we present a nearly complete (93%) NMR resonance assignment of isoleucine, leucine and valine (ILV) side-chains of the USP7 catalytic domain along with a refined nearly complete (93%) assignment of its backbone resonances. The reported ILV methyl group assignment will facilitate further NMR investigations of structure, interactions and conformational dynamics of the USP7 enzyme.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Deubiquitinating enzyme; Deubiquitination; NMR resonance assignment; Protease; Selective labeling; USP7; Ubiquitin specific protease 7

Mesh:

Substances:

Year:  2022        PMID: 35536398      PMCID: PMC9529858          DOI: 10.1007/s12104-022-10079-2

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.731


  37 in total

1.  NMRbox: A Resource for Biomolecular NMR Computation.

Authors:  Mark W Maciejewski; Adam D Schuyler; Michael R Gryk; Ion I Moraru; Pedro R Romero; Eldon L Ulrich; Hamid R Eghbalnia; Miron Livny; Frank Delaglio; Jeffrey C Hoch
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

2.  A 2.2 Å resolution structure of the USP7 catalytic domain in a new space group elaborates upon structural rearrangements resulting from ubiquitin binding.

Authors:  Katrina Molland; Qing Zhou; Andrew D Mesecar
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-02-19       Impact factor: 1.056

3.  Discovery of Small-Molecule Inhibitors of Ubiquitin Specific Protease 7 (USP7) Using Integrated NMR and in Silico Techniques.

Authors:  Paola Di Lello; Richard Pastor; Jeremy M Murray; Robert A Blake; Frederick Cohen; Terry D Crawford; Joy Drobnick; Jason Drummond; Lorna Kategaya; Tracy Kleinheinz; Till Maurer; Lionel Rougé; Xianrui Zhao; Ingrid Wertz; Chudi Ndubaku; Vickie Tsui
Journal:  J Med Chem       Date:  2017-12-08       Impact factor: 7.446

4.  USP7-Specific Inhibitors Target and Modify the Enzyme's Active Site via Distinct Chemical Mechanisms.

Authors:  Alexandra Pozhidaeva; Gabrielle Valles; Feng Wang; Jian Wu; David E Sterner; Phuong Nguyen; Joseph Weinstock; K G Suresh Kumar; Jean Kanyo; Dennis Wright; Irina Bezsonova
Journal:  Cell Chem Biol       Date:  2017-10-19       Impact factor: 8.116

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

7.  Improved 1HN-detected triple resonance TROSY-based experiments.

Authors:  D Yang; L E Kay
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

8.  Structure of USP7 catalytic domain and three Ubl-domains reveals a connector α-helix with regulatory role.

Authors:  Robbert Q Kim; Willem J van Dijk; Titia K Sixma
Journal:  J Struct Biol       Date:  2016-05-13       Impact factor: 2.867

9.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

10.  Kinetic analysis of multistep USP7 mechanism shows critical role for target protein in activity.

Authors:  Robbert Q Kim; Paul P Geurink; Monique P C Mulder; Alexander Fish; Reggy Ekkebus; Farid El Oualid; Willem J van Dijk; Duco van Dalen; Huib Ovaa; Hugo van Ingen; Titia K Sixma
Journal:  Nat Commun       Date:  2019-01-16       Impact factor: 14.919

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