| Literature DB >> 35534933 |
Vitchaya Siripoppohn1, Rapat Pittayanon2, Kasenee Tiankanon2, Natee Faknak2, Anapat Sanpavat3, Naruemon Klaikaew3, Peerapon Vateekul1, Rungsun Rerknimitr2.
Abstract
BACKGROUND/AIMS: Previous artificial intelligence (AI) models attempting to segment gastric intestinal metaplasia (GIM) areas have failed to be deployed in real-time endoscopy due to their slow inference speeds. Here, we propose a new GIM segmentation AI model with inference speeds faster than 25 frames per second that maintains a high level of accuracy.Entities:
Keywords: Artificial intelligence; Deep learning; Gastric intestinal metaplasia; Real-time; Semantic segmentation
Year: 2022 PMID: 35534933 PMCID: PMC9178134 DOI: 10.5946/ce.2022.005
Source DB: PubMed Journal: Clin Endosc ISSN: 2234-2400
Fig. 1.The proposed framework of our study. GI, gastrointestinal; CLAHE, contrast-limited adaptive histogram equalization; BiSeNet, bilateral segmentation network.
Fig. 2.Examples of intersection over union (mIoU) evaluation on a gastric intestinal metaplasia image. (A) IoU=0.8, (B) IoU=0.6, (C) IoU=0.4. Red indicates a ground-truth region. Blue indicates a predicted region. Green demonstrates the intersected area.
Fig. 3.Prediction examples in six images, where the green circle encloses the gastric intestinal metaplasia (GIM) area. (A) Raw image, (B) ground-truth, and (C) prediction by BiSeNet alone, and (D) prediction by our full model (BiSeNet+TL+CLAHE+AUG). Rows 1–4 represent GIM images, and rows 5–6 represent non-GIM images. BiSeNet, bilateral segmentation network; TL, transfer learning; CLAHE, contrast- limited adaptive histogram equalization; AUG, augmentation.
Data separation in the gastric intestinal metaplasia dataset
| Folder | White light image | Narrow-band image | Total |
|---|---|---|---|
| Training | 231 | 329 | 560 |
| Validation | 31 | 51 | 82 |
| Testing | 56 | 104 | 160 |
| Total | 318 | 484 | 802 |
GIM detection performance of two baseline models (DeepLabV3+ and U-Net) compared to four BiSeNet variations
| Both WLE and NBI images | Sensitivity | Specificity | PPV | NPV | Accuracy |
|---|---|---|---|---|---|
| Baseline | |||||
| DeepLabV3+ | 83.75 | 70.00 | 73.63 | 81.16 | 76.88 |
| U-Net | 87.50 | 62.50 | 70.00 | 83.33 | 75.00 |
| Our model | |||||
| BiSeNet | 81.88 | 87.50 | 86.75 | 82.84 | 84.69 |
| BiSeNet+TL | 80.00 | 91.88 | 85.94 | 82.12 | 85.94 |
| BiSeNet+TL+CLAHE | 89.38 | 73.75 | 77.30 | 87.41 | 81.56 |
| BiSeNet+TL+CLAHE+AUG | 93.13 | 80.00 | 82.32 | 92.09 | 86.56 |
Values are presented as percentage.
GIM, gastric intestinal metaplasia; WLE, white light endoscopy; NBI, narrow-band imaging; BiSeNet, bilateral segmentation network; TL, transfer learning; CLAHE, contrast-limited adaptive histogram equalization; AUG, augmentation; PPV, positive predictive value; NPV, negative predictive value.
GIM detection performance of two baseline models (DeepLabV3+ and U-Net) compared to four BiSeNet variations, all using WLE images
| WLE images alone | Sensitivity | Specificity | PPV | NPV | Accuracy |
|---|---|---|---|---|---|
| Baseline | |||||
| DeepLabV3+ | 80.36 | 68.61 | 51.14 | 89.52 | 72.02 |
| U-Net | 85.71 | 60.58 | 47.06 | 91.21 | 67.88 |
| Our model | |||||
| BiSeNet | 78.57 | 85.40 | 68.75 | 90.70 | 83.42 |
| BiSeNet+TL | 71.43 | 91.24 | 76.92 | 88.65 | 85.49 |
| BiSeNet+TL+CLAHE | 83.93 | 72.99 | 55.95 | 91.74 | 76.17 |
| BiSeNet+TL+CLAHE+AUG | 85.71 | 78.83 | 62.34 | 93.10 | 80.83 |
Values are presented as percentage.
GIM, gastric intestinal metaplasia; WLE, white light endoscopy; BiSeNet, bilateral segmentation network; TL, transfer learning; CLAHE, contrast-limited adaptive histogram equalization; AUG, augmentation; PPV, positive predictive value; NPV, negative predictive value.
GIM detection performance of two baseline models (DeepLabV3+ and U-Net) compared to four BiSeNet variations, all using NBI images
| NBI images alone | Sensitivity | Specificity | PPV | NPV | Accuracy |
|---|---|---|---|---|---|
| Baseline | |||||
| DeepLabV3+ | 85.58 | 78.26 | 94.68 | 54.55 | 84.25 |
| U-Net | 88.46 | 73.91 | 93.88 | 58.62 | 85.83 |
| Our model | |||||
| BiSeNet | 83.65 | 100.00 | 100.00 | 57.50 | 86.61 |
| BiSeNet+TL | 84.62 | 95.65 | 98.88 | 57.89 | 86.61 |
| BiSeNet+TL+CLAHE | 92.31 | 78.26 | 95.05 | 69.23 | 89.76 |
| BiSeNet+TL+CLAHE+AUG | 97.12 | 86.96 | 97.12 | 86.96 | 95.28 |
Values are presented as ±95% confidence interval.
GIM, gastric intestinal metaplasia; NBI, narrow-band imaging; BiSeNet, bilateral segmentation network; TL, transfer learning; CLAHE, contrast-limited adaptive histogram equalization; AUG, augmentation; PPV, positive predictive value; NPV, negative predictive value.
The segmentation performance of two baselines (DeepLabV3+ and U-Net) compared to four BiSeNet family models
| Both WLE and NBI images | mIoU for GIM (%) | Error for non-GIM (%) |
|---|---|---|
| Baseline | ||
| DeepLabV3+ | 49.22±3.06 | 1.79±0.72 |
| U-Net | 53.02±2.99 | 1.81±0.53 |
| Our model | ||
| BiSeNet | 45.94±3.07 | 0.46±0.18 |
| BiSeNet+TL | 47.29±3.18 | 0.33±0.17 |
| BiSeNet+TL+CLAHE | 54.94±2.90 | 0.98±0.36 |
| BiSeNet+TL+CLAHE+AUG | 57.04±2.75 | 0.96±0.36 |
Values are presented as ±95% CI.
BiSeNet, bilateral segmentation network; WLE, white light endoscopy; NBI, narrow-band imaging; mIoU, mean intersection over union; GIM, gastric intestinal metaplasia; CI, confidence interval; TL, transfer learning; CLAHE, contrast-limited adaptive histogram equalization; AUG, augmentation.
The inference speed of the two benchmarks (DeepLabV3+ and U-Net) compared to four BiSeNet family model variations
| Method | Frames per second |
|---|---|
| Baseline | |
| DeepLabV3+ | 2.20±0.01 |
| U-Net | 3.49±0.04 |
| Study model | |
| BiSeNet | 34.02±0.24 |
| BiSeNet+TL | 33.33±0.05 |
| BiSeNet+TL+CLAHE | 31.83±0.31 |
| BiSeNet+TL+CLAHE+AUG | 31.53±0.10 |
Values are presented as mean±standard deviation.
BiSeNet, bilateral segmentation network; TL, transfer learning; CLAHE, contrast-limited adaptive histogram equalization; AUG, augmentation.