Literature DB >> 35529251

A divisive hierarchical clustering methodology for enhancing the ensemble prediction power in large scale population studies: the ATHLOS project.

Petros Barmpas1, Sotiris Tasoulis1, Aristidis G Vrahatis1, Spiros V Georgakopoulos2, Panagiotis Anagnostou1, Matthew Prina3,4, José Luis Ayuso-Mateos5,6,7, Jerome Bickenbach8,9, Ivet Bayes5,10, Martin Bobak11, Francisco Félix Caballero12,13, Somnath Chatterji14, Laia Egea-Cortés10, Esther García-Esquinas12,13, Matilde Leonardi15, Seppo Koskinen16, Ilona Koupil17,18, Andrzej Paja K19, Martin Prince4,20, Warren Sanderson21,22, Sergei Scherbov21,23,24, Abdonas Tamosiunas25, Aleksander Galas26, Josep Maria Haro5,10, Albert Sanchez-Niubo5,10, Vassilis P Plagianakos1, Demosthenes Panagiotakos27.   

Abstract

The ATHLOS cohort is composed of several harmonized datasets of international groups related to health and aging. As a result, the Healthy Aging index has been constructed based on a selection of variables from 16 individual studies. In this paper, we consider additional variables found in ATHLOS and investigate their utilization for predicting the Healthy Aging index. For this purpose, motivated by the volume and diversity of the dataset, we focus our attention upon data clustering, where unsupervised learning is utilized to enhance prediction power. Thus we show the predictive utility of exploiting hidden data structures. In addition, we demonstrate that imposed computation bottlenecks can be surpassed when using appropriate hierarchical clustering, within a clustering for ensemble classification scheme, while retaining prediction benefits. We propose a complete methodology that is evaluated against baseline methods and the original concept. The results are very encouraging suggesting further developments in this direction along with applications in tasks with similar characteristics. A straightforward open source implementation for the R project is also provided (https://github.com/Petros-Barmpas/HCEP). Supplementary Information: The online version contains supplementary material available at 10.1007/s13755-022-00171-1.
© The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022.

Entities:  

Keywords:  ATHLOS cohort; Clustering; Ensemble methods; Prediction enhancement

Year:  2022        PMID: 35529251      PMCID: PMC9013733          DOI: 10.1007/s13755-022-00171-1

Source DB:  PubMed          Journal:  Health Inf Sci Syst        ISSN: 2047-2501


  40 in total

1.  Curcumin extends life span, improves health span, and modulates the expression of age-associated aging genes in Drosophila melanogaster.

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Journal:  Rejuvenation Res       Date:  2010-07-20       Impact factor: 4.663

2.  [Rationale and methods of the study on nutrition and cardiovascular risk in Spain (ENRICA)].

Authors:  Fernando Rodríguez-Artalejo; Auxiliadora Graciani; Pilar Guallar-Castillón; Luz M León-Muñoz; M Clemencia Zuluaga; Esther López-García; Juan Luis Gutiérrez-Fisac; José M Taboada; M Teresa Aguilera; Enrique Regidor; Fernando Villar-Álvarez; José R Banegas
Journal:  Rev Esp Cardiol       Date:  2011-08-06       Impact factor: 4.753

3.  Development of a 5 year life expectancy index in older adults using predictive mining of electronic health record data.

Authors:  Jason Scott Mathias; Ankit Agrawal; Joe Feinglass; Andrew J Cooper; David William Baker; Alok Choudhary
Journal:  J Am Med Inform Assoc       Date:  2013-03-28       Impact factor: 4.497

4.  Combining clustering and classification ensembles: A novel pipeline to identify breast cancer profiles.

Authors:  Utkarsh Agrawal; Daniele Soria; Christian Wagner; Jonathan Garibaldi; Ian O Ellis; John M S Bartlett; David Cameron; Emad A Rakha; Andrew R Green
Journal:  Artif Intell Med       Date:  2019-05-15       Impact factor: 5.326

5.  Physical Activity Attenuates Total and Cardiovascular Mortality Associated With Physical Disability: A National Cohort of Older Adults.

Authors:  David Martinez-Gomez; Pilar Guallar-Castillon; Sara Higueras-Fresnillo; Esther Garcia-Esquinas; Esther Lopez-Garcia; Stefania Bandinelli; Fernando Rodríguez-Artalejo
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2018-01-16       Impact factor: 6.053

6.  A comparison of statistical and machine-learning techniques in evaluating the association between dietary patterns and 10-year cardiometabolic risk (2002-2012): the ATTICA study.

Authors:  Dimitris Panaretos; Efi Koloverou; Alexandros C Dimopoulos; Georgia-Maria Kouli; Malvina Vamvakari; George Tzavelas; Christos Pitsavos; Demosthenes B Panagiotakos
Journal:  Br J Nutr       Date:  2018-05-23       Impact factor: 3.718

7.  Patterns of alcohol consumption and risk of falls in older adults: a prospective cohort study.

Authors:  R Ortolá; E García-Esquinas; I Galán; P Guallar-Castillón; E López-García; J R Banegas; F Rodríguez-Artalejo
Journal:  Osteoporos Int       Date:  2017-07-19       Impact factor: 4.507

Review 8.  Biomarkers of Aging: From Function to Molecular Biology.

Authors:  Karl-Heinz Wagner; David Cameron-Smith; Barbara Wessner; Bernhard Franzke
Journal:  Nutrients       Date:  2016-06-02       Impact factor: 5.717

9.  Divisive hierarchical maximum likelihood clustering.

Authors:  Alok Sharma; Yosvany López; Tatsuhiko Tsunoda
Journal:  BMC Bioinformatics       Date:  2017-12-28       Impact factor: 3.169

10.  Cohort Profile: The 10/66 study.

Authors:  A Matthew Prina; Daisy Acosta; Isaac Acosta; Mariella Guerra; Yueqin Huang; A T Jotheeswaran; Ivonne Z Jimenez-Velazquez; Zhaorui Liu; Juan J Llibre Rodriguez; Aquiles Salas; Ana Luisa Sosa; Joseph D Williams; Martin Prince
Journal:  Int J Epidemiol       Date:  2017-04-01       Impact factor: 7.196

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