| Literature DB >> 35527687 |
Nawel Abdellaoui1, Balkiss Abdelmoula1, Rania Abdelhedi2, Najla Kharrat2, Mouna Tabebi3, Ahmed Rebai2, Nouha Bouayed Abdelmoula1.
Abstract
BACKGROUND: Uridine diphosphate-glucuronosyl transferase 1A1 (UGT1A1), which is the major UGT1 gene product, is located on chromosome 2q37. The expression of UGT1A1 is relatively managed by a polymorphic dinucleotide repeat inside the promoter TATA box consisting of 5-8 copies of a TA repeat. A (TA) 6TAA is considered as the wild type. The A (TA) 7TAA allele has been identified as the most frequent allele in the Caucasian populations while A (TA) 8TAA allele remains the rarest allele worldwide in North Africa, including the Arab populations.Entities:
Keywords: zzm321990UGT1A1zzm321990; (TA) 8; UDP-glucuronosyl transferase; crigler-najjar syndrome type I; hereditary unconjugated hyperbilirubinemia
Mesh:
Substances:
Year: 2022 PMID: 35527687 PMCID: PMC9169181 DOI: 10.1002/jcla.24482
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 3.124
Primers used to amplify UGT1A1 gene
| Amplified region | Primer sequences | PCR product size (bp) |
|---|---|---|
| TATA box and 5’ end of exon 1 | 405 | |
| forward primer | 5´‐CTTGGTGTATCGATTGGTTTTTG−3´ | |
| Reverse primer | 5`‐ACACGCTGCAGGAAAGAATC−3´ | |
| Rest of Exon 1 | 702 | |
| forward primer | 5´‐TGTGCCATTCCAAAGGGAG−3´ | |
| Reverse primer | 5´‐TCTGGGGCTAGTTAATCGATCC−3´ | |
| Exon 2 | 409 | |
| forward primer | 5´‐TGTAAGCAGGAACCCTTCCTCC−3´ | |
| Reverse primer | 5´‐GAAGCTGGAAGTCTGGGATTAG−3´ | |
| Exon 3 | 402 | |
| forward primer | 5´‐CCTCCCACTCTGTTAAAGACTGTTC−3´ | |
| Reverse primer | 5´‐AGTGTTACTCACATGCCCTTGC−3´ | |
| Exon 4 | 434 | |
| forward primer | 5´‐TGCAAGGGCATGTGAGTAACAC‐´3´ | |
| Reverse primer | 5´‐TTGAAACAACGCTATTAAATGCTACG−3´ | |
| Exon 5 | 429 | |
| forward primer | 5´‐GAGAGGATTGTTCATACCACAGG−3´ | |
| Reverse primer | 5´‐CACTGATTCTGTTTTCAAGTTTGG−3´ |
Presentation of the studied population
| Patients | Geographic origin | Age at the discovery of the jaundice /Age at hospitalization | Levels of BT/BC/UCB(µmol/L) | Karyotype | Neurological signs | Kernicterus | Associated pathologies | Evolution |
|---|---|---|---|---|---|---|---|---|
| P1 | Sidi Bouzid | Day 3/1 months | 470/89/379 | Unavailable | Axial hypotonia | + | Umbilical hernia | Death |
| P2 | Sidi Bouzid | Day 6/1 months | 460/20/239 | 46,XX | Axial hypotonia | ‐ | ‐‐ | ‐‐ |
| P3 | Sidi Bouzid | Day 6/day 9 | 608/8/‐‐ | 46,XX | Convulsions | ‐ | Enlarged clitoris | ‐‐ |
| P4 | Gafsa | Day 6/1 months | 354/3/‐‐ | 46,XY | No | ‐ | Enophthalmos colobomeirian microphthalmia | ‐‐ |
| P5 | Sidi Bouzid | Day 3/7 months | ‐‐Under phenobarbital | 46,XY | Febrile status epilepticus | + | Speech and walking disorders Sharp deep tendon reflexes and hypertonia of the limbs | Alive +at school without cognitive and motor sequelae |
| P6 | Sidi Bouzid | Day 4/3 months | 590/8/‐‐ | 46,XY | Seizures Consciousness disorders Axial hypotonia Weak cry | + | Hyperthyroidism Hypertrophic pyloric stenosis | Death |
| P7 | Gafsa | Day 3/day20 | ‐‐ | Unavailable | No | ‐‐ | ‐‐ | ‐‐ |
| P8 | Gafsa | H10/H36 | 139/14,65/124,3 | Unavailable | No | ‐ | Suspected G6PD deficiency | ‐‐ |
| P9 | Gafsa | Not known/Day 10 | 192,7/12,7/‐−496/1,84/‐‐ | Unavailable | Axial hypotonia | ‐ | Fetal distress (tinted amniotic fluid) | ‐‐ |
| P10 | Gafsa | Not known/Day 10 | 269/18 418/7,3/366 | Unavailable | Axial hypotonia Sunset eyes | + | hepatosplenomegaly | Death |
| P11 | Sidi Bouzid | Day 3/3 months | 540/28/512 | Unavailable | Axial hypotonia | ‐ | ‐‐ | ‐‐ |
| P12 | Gafsa | Day 5/3 months | 248/22 /‐−310/21/‐−442,6/21,58/‐‐ | Unavailable | Axial hypotonia Generalized convulsions Rolled eyes Lack of eye pursuit | + | ‐‐ | Death |
| P13 | Gafsa | Day 7/Day 20 | ? | Unavailable | ? | ? | ‐‐ | ‐‐ |
| P14 | Gafsa | Day 3/Day 7 | 383/30/353 437/30 /407 | Unavailable | No | ‐ | ‐‐ | ‐‐ |
| P15 | Gafsa | Day 1/3 months | 800/‐‐ /‐−600/10 /‐−314,5/‐‐ /286,4 | Unavailable | No | ‐ | ‐‐ | Alive +at school without cognitive and motor sequelae |
| P16 | Kasserine | Day 1/1 month | 580/180/‐‐ | Unavailable | No | ‐ | Hepatosplenomegaly | Death |
| P17 | Sidi Bouzid | Day 3/Day 8 | 272/17/255 | Unavailable | No | ‐ | Neonatal infection | ‐‐ |
Abbreviations: BT, total Bilirubin; BC, Conjugated bilirubin; UCB, unconjugated bilirubin; H, hour; ‐, absence; ‐‐, unknown
Association of c.1070A>G in Exon 3 with TA insertion in promoter region of UGT1A1 in CN patients
| CN ( | c.1070A>G in Exon 3 Homo ( | c.1070A>G in Exon 3 heter ( |
|---|---|---|
| A(TA)7TAA | ||
| Heter | 0 | 13(81.25%) (TA)6/7 |
| Homo | 12(70,6%) (TA)7/7 | 0 |
| A(TA) 8TAA | ||
| Heter | 0 | 3(18.75%) (TA)7/8 |
| Homo | 05(29.4%) (TA)8/8 | 0 |
Abbreviations: Homo, Homozygous; Heter, Heterozygous.
Results of Exon 3 and TATA box sequencing in CN patients
| Subjects | Mutation Exon 3 | Genotype Exon 3 | UGT1A1*16 state | Polymorphism A(TA)nTAA | Genotype | Polymorphism A(TA)nTAA state |
|---|---|---|---|---|---|---|
| S1 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S2 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S3 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S4 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S5 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S6 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S7 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S8 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*37/UGT1A1*37 | Homozygous 8/8 TA |
| S9 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/ UGT1A1*28 | Homozygous 7/7 TA |
| S10 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S11 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S12 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)8TAA | UGT1A1*37/UGT1A1*37 | Homozygous 8/8TA |
| S13 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)8TAA | UGT1A1*37/UGT1A1*37 | Homozygous 8/8TA |
| S14 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)8TAA | UGT1A1*37/UGT1A1*37 | Homozygous 8/8TA |
| S15 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
| S16 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)8TAA | UGT1A1*37/UGT1A1*37 | Homozygous 8/8TA |
| S17 | c.1070A>G | UGT1A1*16/UGT1A1*16 | Homozygous | A(TA)7TAA | UGT1A1*28/UGT1A1*28 | Homozygous 7/7 TA |
UGT1A1 alleles and enzymatic activity ,
| Metabolic capacity /enzymatic activity | Allele number |
|---|---|
| Increased functional | UGT1A1*36 |
| Fully functional | UGT1A1*1(wt) |
| Reduced functionality | UGT1A1*37 and UGT1A1*28 |
Abbreviation: Wt, wild type.