Literature DB >> 35524132

Omics Analyses: How to Navigate Through a Constant Data Deluge.

Thomas Denecker1, Gaëlle Lelandais2.   

Abstract

Omics data are very valuable for researchers in biology, but the work required to develop a solid expertise in their analysis contrasts with the rapidity with which the omics technologies evolve. Data accumulate in public databases, and despite significant advances in bioinformatics softwares to integrate them, data analysis remains a burden for those who perform experiments. Beyond the issue of dealing with a very large number of results, we believe that working with omics data requires a change in the way scientific problems are solved. In this chapter, we explain pitfalls and tips we found during our functional genomics projects in yeasts. Our main lesson is that, if applying a protocol does not guarantee a successful project, following simple rules can help to become strategic and intentional, thus avoiding an endless drift into an ocean of possibilities.
© 2022. The Author(s).

Entities:  

Keywords:  Analysis cycle; Data; Information; Knowledge; Omics; Visualization

Mesh:

Year:  2022        PMID: 35524132     DOI: 10.1007/978-1-0716-2257-5_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  26 in total

1.  Genomics is not enough.

Authors:  Aravinda Chakravarti
Journal:  Science       Date:  2011-10-07       Impact factor: 47.728

2.  Computer science. Beyond the data deluge.

Authors:  Gordon Bell; Tony Hey; Alex Szalay
Journal:  Science       Date:  2009-03-06       Impact factor: 47.728

3.  The technology hype cycle.

Authors:  Arthur T Johnson
Journal:  IEEE Pulse       Date:  2015 Mar-Apr       Impact factor: 0.924

Review 4.  Omics in Systems Biology: Current Progress and Future Outlook.

Authors:  Timothy D Veenstra
Journal:  Proteomics       Date:  2021-01-15       Impact factor: 3.984

5.  Data scientist: the sexiest job of the 21st century.

Authors:  Thomas H Davenport; D J Patil
Journal:  Harv Bus Rev       Date:  2012-10

6.  The real cost of sequencing: higher than you think!

Authors:  Andrea Sboner; Xinmeng Jasmine Mu; Dov Greenbaum; Raymond K Auerbach; Mark B Gerstein
Journal:  Genome Biol       Date:  2011-08-25       Impact factor: 13.583

7.  Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata.

Authors:  Thomas Denecker; Youfang Zhou Li; Cécile Fairhead; Karine Budin; Jean-Michel Camadro; Monique Bolotin-Fukuhara; Adela Angoulvant; Gaëlle Lelandais
Journal:  NAR Genom Bioinform       Date:  2020-04-20

8.  Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.

Authors:  Alexander Ostrovsky; Jennifer Hillman-Jackson; Dave Bouvier; Dave Clements; Enis Afgan; Daniel Blankenberg; Michael C Schatz; Anton Nekrutenko; James Taylor; The Galaxy Team; Delphine Lariviere
Journal:  Curr Protoc       Date:  2021-02

9.  The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.

Authors:  Daniel J Rigden; Xosé M Fernández
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 10.  State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing.

Authors:  Michal Krassowski; Vivek Das; Sangram K Sahu; Biswapriya B Misra
Journal:  Front Genet       Date:  2020-12-10       Impact factor: 4.599

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