Literature DB >> 35519267

Improving the generalization of glaucoma detection on fundus images via feature alignment between augmented views.

Chengfeng Zhou1, Juan Ye2, Jun Wang3, Zhiyong Zhou4, Linyan Wang2, Kai Jin2, Yaofeng Wen1, Chun Zhang5, Dahong Qian1.   

Abstract

Convolutional neural networks (CNNs) are commonly used in glaucoma detection. Due to the various data distribution shift, however, a well-behaved model may be plummeting in performance when deployed in a new environment. On the other hand, the most straightforward method, data collection, is costly and even unrealistic in practice. To address these challenges, we propose a new method named data augmentation-based (DA) feature alignment (DAFA) to improve the out-of-distribution (OOD) generalization with a single dataset, which is based on the principle of feature alignment to learn the invariant features and eliminate the effect of data distribution shifts. DAFA creates two views of a sample by data augmentation and performs the feature alignment between that augmented views through latent feature recalibration and semantic representation alignment. Latent feature recalibration is normalizing the middle features to the same distribution by instance normalization (IN) layers. Semantic representation alignment is conducted by minimizing the Topk NT-Xent loss and the maximum mean discrepancy (MMD), which maximize the semantic agreement across augmented views from individual and population levels. Furthermore, a benchmark is established with seven glaucoma detection datasets and a new metric named mean of clean area under curve (mcAUC) for a comprehensive evaluation of the model performance. Experimental results of five-fold cross-validation demonstrate that DAFA can consistently and significantly improve the out-of-distribution generalization (up to +16.3% mcAUC) regardless of the training data, network architectures, and augmentation policies and outperform lots of state-of-the-art methods.
© 2022 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.

Entities:  

Year:  2022        PMID: 35519267      PMCID: PMC9045897          DOI: 10.1364/BOE.450543

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.562


  13 in total

1.  ORIGA(-light): an online retinal fundus image database for glaucoma analysis and research.

Authors:  Zhuo Zhang; Feng Shou Yin; Jiang Liu; Wing Kee Wong; Ngan Meng Tan; Beng Hai Lee; Jun Cheng; Tien Yin Wong
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2010

2.  Integrating structured biological data by Kernel Maximum Mean Discrepancy.

Authors:  Karsten M Borgwardt; Arthur Gretton; Malte J Rasch; Hans-Peter Kriegel; Bernhard Schölkopf; Alex J Smola
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

3.  Squeeze-and-Excitation Networks.

Authors:  Jie Hu; Li Shen; Samuel Albanie; Gang Sun; Enhua Wu
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2019-04-29       Impact factor: 6.226

4.  Constrained Domain Adaptation for Image Segmentation.

Authors:  M Bateson; J Dolz; H Kervadec; H Lombaert; I Ben Ayed
Journal:  IEEE Trans Med Imaging       Date:  2021-06-30       Impact factor: 10.048

5.  Unsupervised Bidirectional Cross-Modality Adaptation via Deeply Synergistic Image and Feature Alignment for Medical Image Segmentation.

Authors:  Cheng Chen; Qi Dou; Hao Chen; Jing Qin; Pheng Ann Heng
Journal:  IEEE Trans Med Imaging       Date:  2020-02-10       Impact factor: 10.048

6.  A Large-Scale Database and a CNN Model for Attention-Based Glaucoma Detection.

Authors:  Liu Li; Mai Xu; Hanruo Liu; Yang Li; Xiaofei Wang; Lai Jiang; Zulin Wang; Xiang Fan; Ningli Wang
Journal:  IEEE Trans Med Imaging       Date:  2019-07-08       Impact factor: 10.048

7.  REFUGE Challenge: A unified framework for evaluating automated methods for glaucoma assessment from fundus photographs.

Authors:  José Ignacio Orlando; Huazhu Fu; João Barbosa Breda; Karel van Keer; Deepti R Bathula; Andrés Diaz-Pinto; Ruogu Fang; Pheng-Ann Heng; Jeyoung Kim; JoonHo Lee; Joonseok Lee; Xiaoxiao Li; Peng Liu; Shuai Lu; Balamurali Murugesan; Valery Naranjo; Sai Samarth R Phaye; Sharath M Shankaranarayana; Apoorva Sikka; Jaemin Son; Anton van den Hengel; Shujun Wang; Junyan Wu; Zifeng Wu; Guanghui Xu; Yongli Xu; Pengshuai Yin; Fei Li; Xiulan Zhang; Yanwu Xu; Hrvoje Bogunović
Journal:  Med Image Anal       Date:  2019-10-08       Impact factor: 8.545

8.  Efficacy of a Deep Learning System for Detecting Glaucomatous Optic Neuropathy Based on Color Fundus Photographs.

Authors:  Zhixi Li; Yifan He; Stuart Keel; Wei Meng; Robert T Chang; Mingguang He
Journal:  Ophthalmology       Date:  2018-03-02       Impact factor: 12.079

9.  Glaucoma detection based on deep convolutional neural network.

Authors: 
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2015-08

10.  Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning.

Authors:  Daniel S Kermany; Michael Goldbaum; Wenjia Cai; Carolina C S Valentim; Huiying Liang; Sally L Baxter; Alex McKeown; Ge Yang; Xiaokang Wu; Fangbing Yan; Justin Dong; Made K Prasadha; Jacqueline Pei; Magdalene Y L Ting; Jie Zhu; Christina Li; Sierra Hewett; Jason Dong; Ian Ziyar; Alexander Shi; Runze Zhang; Lianghong Zheng; Rui Hou; William Shi; Xin Fu; Yaou Duan; Viet A N Huu; Cindy Wen; Edward D Zhang; Charlotte L Zhang; Oulan Li; Xiaobo Wang; Michael A Singer; Xiaodong Sun; Jie Xu; Ali Tafreshi; M Anthony Lewis; Huimin Xia; Kang Zhang
Journal:  Cell       Date:  2018-02-22       Impact factor: 41.582

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