Literature DB >> 35516730

Semi-empirical and ab initio calculations for crystals under pressure at fixed temperatures: the case of guanidinium perchlorate.

Dmitry V Korabel'nikov1, Yuriy N Zhuravlev1.   

Abstract

A simple semi-empirical approach is proposed to calculate structure and properties of crystals under pressure at fixed temperatures. The computed semi-empirical pressure dependencies for guanidinium perchlorate are in good agreement with available experimental data. Ab initio results within quasi-harmonic approximation for guanidinium perchlorate are also presented. This journal is © The Royal Society of Chemistry.

Entities:  

Year:  2020        PMID: 35516730      PMCID: PMC9057916          DOI: 10.1039/d0ra08588j

Source DB:  PubMed          Journal:  RSC Adv        ISSN: 2046-2069            Impact factor:   4.036


Introduction

The effect of external factors, such as pressure (P) and temperature (T), on crystal structure and properties has been of great interest in recent years.[1-10] Studies of the behavior of solids under pressure are very promising as it is one of the effective methods for studying intermolecular interactions.[11] Quantum chemical ab initio computations within density functional theory (DFT) allow modelling crystal structure and properties, which are in good agreement with experimental results.[12] Moreover, computer modeling is used to predict and design new materials.[13] Standard ab initio calculations correspond to a static lattice (ground state) and do not take into account thermal effects caused by atomic thermal vibrations. Anharmonicity in interactions and thermal expansion for crystals can be considered within so-called quasi-harmonic approximation (QHA),[14] which takes into account dependence of harmonic phonon frequencies ω on the volume V. Dispersion-corrected quasi-harmonic ab initio computations perform well in describing thermal properties of molecular crystals.[2] The main problem within quasi-harmonic ab initio calculations is to determine the phonon frequency distribution g(ω, V). This is due to the fact that phonon density of states calculations are very computationally demanding tasks. The relatively simple method is quasi-harmonic Debye–Einstein (DE) approximation.[15] The crystal structure at ambient pressure is usually known from X-ray or neutron diffraction measurements. It's well known that there is “structure–properties” relationship.[16] It's interesting to know how we can to account thermal expansion for structure of compressed crystal (thus, for its properties under pressure) based on simple standard ab initio calculations for static lattice and structural experimental data at ambient pressure. Therefore, it is significant to find simple semi-empirical approach to compute equation of state P (V, T) and its equivalent V (P, T). Perchlorates have been widely used in explosive compositions, propellant mixtures and pyrotechnics. Guanidinium perchlorate (GP) is semi-organic nonlinear optical (NLO) and ferroelectric material.[17,18] Ferroelectric materials are widely used in many applications.[19] Besides, GP is quite attractive to be used in solid-state coolers and can provide temperature control.[18] Guanidinium perchlorate is ionic-molecular oxyanionic crystal which has layered supramolecular structure with molecular organic guanidinium cations, C(NH2)3+, and molecular perchlorate anions, ClO4−. Under ambient conditions, it has trigonal structure (space group symmetry R3m).[20] The experimental ambient lattice constants a and c for its hexagonal unit cell (with 3 formula units) are equal to 7.606 Å and 9.121 Å, respectively.[20] Perchlorate anions in guanidinium perchlorate contain two nonequivalent oxygen atoms O1 and O2. The knowledge of the behavior of GP and similar supramolecular structures under external pressure is important both for fundamental and applied research.[21,22] The pressure effect on the guanidinium perchlorate structure was experimentally studied using Raman spectroscopy and X-ray diffraction at room temperature.[21,22] Strong anisotropy of GP linear compressibility was shown. GP is stable up to 4.5 GPa, after that it undergoes a phase transition. The GP structural data at various fixed temperatures (T ∼ 100–400 K) were studied in ref. 18. Thermal measurements for GP show that it undergoes a phase transition at T ∼450 K.[18,23] The results of optical and nonlinear optical studies for GP were reported in ref. 17. As we know, data on pressure dependencies of structure at low temperatures (below room temperature), band gap, elastic constants and electron density topological properties were not reported for GP. In the present work we studied GP under pressure with account of thermal effects based on semi-empirical and ab initio calculations.

Computational details

Ab initio calculations were performed using CRYSTAL program.[24] Basis sets of atomic orbitals[25-28] and dispersion-corrected generalized-gradient PBE DFT functional[29,30] were used in our calculations. Grimme's dispersion correction[30] was used in order to include the long-range intermolecular interactions. Structural parameters for static lattice were calculated by geometry optimization (all atoms positions and cell lengths) in accordance with BFGS algorithm.[31] Energy convergence was better than at 10−8 a.u. Chemical bond was studied based on Bader's quantum theory of atoms in molecules (QTAIM).[32] Energies of hydrogen bonds were evaluated using potential energy density at bond critical points.[33] The TOPOND code[34] was used for QTAIM electron density topological analysis. We used quasi-harmonic DE approximation[15] to include thermal effects based on ab initio calculations. Ab initio frequencies were computed using diagonalization of the mass-weighted Hessian matrix of second energy derivatives with respect to atomic displacements.[24] Vinet universal equation of state[35] (EOS) was fitted to pressure-volume data. Three parameters determine this EOS: equilibrium volume (V0), bulk modulus (B0) and its pressure derivative (∂B0/∂P). It's known[36] that pressure can be expressed as P (V, T) = PST (V) + PTH (V, T), where PST (V) = −∂EST (V)/∂V is static pressure (EST (V) is ab initio static energy) and PTH (V, T) = −∂Fvib (V, T)/∂V is thermal pressure (Fvib (V, T) is vibrational part of the Helmholtz free energy). Within the framework of the quasi-harmonic approximation the thermal pressure PTH (V, T) can be expressed as , where f(V) = ħωγ/V (ω and γ are the frequency and Gruneisen's parameter of i-th vibrational mode, respectively).[14] The functions f (V) are equal to constants ħ·b within the frequency linear approximation (ω = a − b·V). Thermal pressure is weakly dependent on V and, therefore, PTH (V, T) ≈ PTH (T).[37] So, volume-pressure dependencies at fixed temperatures T0 (isotherms P (V, T0)) can be obtained through shift of static pressure function PST (V) by PTH (T0). Thermal pressure PTH (T0) should correspond to equilibrium volume V0 at fixed temperature T0. Ab initio thermal pressures were found based on ab initio calculations of frequencies ω within quasi-harmonic approximation. In contrast to ab initio method, we used experimental equilibrium volumes in semi-empirical approach to find thermal pressures PTH without ab initio calculations of frequencies. In the present work we propose to set the equilibrium volumes V0 for isotherms P(V, T0) as equal to experimental ones V0 (T0)expt (Scheme 1). So, PTH (T0) = −PST (Vexpt0).
Scheme 1

Pressure–volume dependencies for static lattice (PST (V)) and for crystal at fixed temperature (P (V, T0)) according to semi-empirical approach (V0 = V0 (T0)expt).

Thermal pressure for guanidinium perchlorate at room temperature obtained in our work within semi-empirical approach (0.68 GPa) is comparable with its ab initio value (0.78 GPa).

Results and discussion

Fig. 1 presents our calculated semi-empirical and ab initio pressure dependencies of lattice parameters and volume for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). Calculated equation of state parameters (V0, B0, ∂B0/∂P) for GP at different temperatures are presented in Table 1. Experimental data are given for T = 295 K.[22] It can be seen that ab initio method within quasi-harmonic Debye–Einstein approximation overestimated structural parameters in comparison with experimental data. It should be noted that ab initio equilibrium volumes (V0) at room temperature are also overestimated (∼1%) for RDX and TATB crystals.[2] More powerful and time-consuming ab initio methods need to be used for stricter account of anharmonicity effects in GP, RDX and TATB. On the other hand, the results obtained, using simple semi-empirical method, agree well with experiment (Fig. 1).
Fig. 1

Calculated semi-empirical and ab initio pressure dependencies of lattice parameters and volume for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). Experimental points correspond to T = 295 K.[22]

Calculated equation of state parameters (V0, B0, ∂B0/∂P) for guanidinium perchlorate at different temperatures. Experimental data are given for T = 295 K (ref. 22)

TemperatureMethod V 0 B 0 B0/∂P
T = 295 KExpt.[22]4556.9311.4
Semi-empirical4557.3510.0
Ab initio 4627.438.83
T = 210 KSemi-empirical4469.149.51
Ab initio 4519.108.66
T = 100 KSemi-empirical43711.19.06
Ab initio 43911.28.49
Static latticeSemi-empirical42613.78.55
Ab initio 42613.78.55
The GP compressibility along a-axis is much less than along c-axis (Fig. 1). So, there is strong compressibility anisotropy for GP. This can occur due to layered structure of GP with strong covalent and hydrogen bonds in ab plane (Fig. 3). GP is highly compressible material (Fig. 1) with relatively small bulk modulus ∼7 GPa at T = 295 K (Table 1), which is even smaller than room temperature bulk moduli for some molecular crystals reported in ref. 2. It is interesting to note that our calculated semi-empirical bulk moduli are in good agreement with ab initio moduli (Table 1). Fig. 1 demonstrates nonlinearity of pressure dependencies for c parameter and volume of GP. Such pressure behavior results in relatively high pressure derivative of B0 (Table 1). With temperature increase from 100 K up to 295 K equilibrium volume V0 increases by 4.1 and 5.2% within semi-empirical and ab initio approaches, respectively (Table 1). At the same time, this thermal volume expansion results in considerable decrease of B0 (∼33%). So, it is important to take into account thermal effects for behavior under pressure and mechanical properties of GP.
Fig. 3

Calculated semi-empirical pressure dependencies of N⋯O distances, energy density Hc at H⋯O1 critical points and hydrogen bond energy EHB for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). Experimental points and triangles correspond to T = 295 K.[22]

Pressure dependencies of GP elastic constants at fixed temperatures (Fig. 2) were computed according to quasi-static approach[38] and semi-empirical volume–pressure–temperature dependencies.
Fig. 2

Calculated independent elastic constants as semi-empirical functions of pressure for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). C11 = 43.3, C12 = 29.3, C13 = 3.4, C14 = −0.5, C33 = 6.9, C44 = 0.6 GPa (at T = 295 K).

The elastic stability conditions[39] (the Born criteria) are fulfilled for GP. C11 elastic constant is considerably greater (∼4 to 6 times) than C33. This is due to the layered structure of GP (Fig. 3) with strong intralayer interactions (covalent and hydrogen bonds) in ab plane. C44 elastic constant has a relatively small value at room temperature (0.63 GPa). C11 and C12 elastic constants increase by 72 and 58% at room temperature whereas C13, C14, C33 and C44 increase by a factor of 1.4, 4.4, 3.5 and 9.1, respectively, when the pressure increases up to 2 GPa. On the other hand, elastic constants C11 and C12 at ambient pressure decrease by 15 and 13%, whereas C13, C14, C33 and C44 by 22, 54, 45 and 61%, respectively, when the temperature increases from T = 100 K up to T = 295 K. Fig. 3 presents our calculated semi-empirical pressure dependencies of N⋯O distances, energy density at hydrogen bond critical points (Hc) and hydrogen bond energy (EHB) for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). Experimental points and triangles are given for T = 295 K.[22]Fig. 3 reveals that interlayer N⋯O2 distance decreases with pressure more significantly than intralayer N⋯O1 distance, similar to c and a parameters, respectively (Fig. 1). It can also be seen that GP cooling down to T = 100 K leads to reduction of N⋯O2 distance by 1.5%. The electron density topological analysis, in the framework of the QTAIM, is a powerful chemical bond study method.[40] The condition for chemical bond formation is the presence of so-called bond critical point (BCP).[32] Electron density (ρc) and energy density at the bond critical point (Hc) are important characteristics. Hc > 0 corresponds to non-covalent closed shell interactions (electrostatic or dispersion), while at Hc < 0 (ρc is stabilizing) the bond has a covalent component (covalent or partly covalent interactions).[41] One of the superiority of Bader QTAIM approach is the possibility to reveal even weak bonding interatomic interactions and calculate their energies.[42] As can be seen from Fig. 3, energy density Hc nearly linearly decreases with pressure increase. At the same time hydrogen bond energy (EHB ∼ 24–26 kJ mol−1) increases by ∼20% when the pressure increases up to 2 GPa. EHB at ambient pressure decreases by 4.5% when the temperature increases from T = 100 K up to T = 295 K. Extrapolations for pressure dependencies of energy density give negative values of Hc at pressures more than 4.2, 3.8 and 3.5 GPa for 295 K, 210 K and 100 K, respectively. So, the GP hydrogen bonds at pressure ∼4 GPa become partially covalent in nature. Electrostatic and partially covalent nature of hydrogen bonds for other crystals and molecular complexes was studied earlier in ref. 43. It is interesting to note that GP at P ∼4 GPa undergoes a phase transition.[21] The electron density at BCP (ρc ∼ 0.023 a.u.) increases by ∼15%, whereas bond degree parameter[44] (BD = Hc/ρc) decreases ∼2 times as the pressure rises to 2 GPa (Fig. 4). On the other hand, when the temperature increases from T = 100 K up to T = 295 K, ρc at ambient pressure decreases and BD increases by 3.2% and 15%, respectively.
Fig. 4

Calculated semi-empirical pressure dependencies of electron density at bond critical points (ρc) and bond degree (BD) for hydrogen bonds in guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines).

Our calculated Raman spectrum of GP for NH2 stretch modes in comparison with experimental spectrum[21] is given in Fig. 5. It shows three maximums at 3371, 3419 and 3493 cm−1, which are in agreement with experimental ones within 2%. In general, blue or red shift can occur when hydrogen bond length decreases.[45] Our calculated frequencies of NH2 stretch modes increase with pressure increase up to 2 GPa (blue shift ∼10 cm−1) in accordance with experimental data reported in ref. 21. As it was pointed out in ref. 21, this reflects the strengthening of hydrogen bonds in GP with increasing pressure. When the temperature increases from T = 100 K up to T = 295 K, our calculated frequencies ω of NH2 stretch modes at ambient pressure decreases by ∼2 cm−1 (Fig. 5).
Fig. 5

Calculated Raman spectrum and semi-empirical pressure dependencies of frequencies ω of NH2 stretch modes for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines). Experimental Raman spectrum corresponds to ambient conditions.[21]

In our previous works we reported ab initio investigations of thermal properties for alkali metal nitrates, chlorates and perchlorates.[46] In the present work we performed ab initio calculations of GP thermal properties (thermal expansion, entropy and heat capacity) as functions of temperature for pressures P = 0, 1, 2 GPa (Fig. 6). The computed volume thermal expansion is in reasonable agreement with experimental data reported in ref. 18. The calculated volume thermal expansion coefficient is ∼3 × 10−4 K−1 (at room temperature) and it decreases ∼3 times when the pressure increases up to 2 GPa. The computed room temperature entropy is 241 J mol−1 K−1 and it decreases by 12.5% with pressure increase up to 2 GPa. Heat capacity almost linearly increases with temperature increase from 50 K and it has value of ∼200 J mol−1 K−1 at room temperature, this is in reasonable agreement with experimental data (ref. 18). It decreases by 7.8% as the pressure grows up to 2 GPa. On the other hand, volume thermal expansion coefficient αV, entropy S and heat capacity Cp at ambient pressure increase by a factor of 1.5, 2.7 and 2.2, respectively, when the temperature increases from T = 100 K up to T = 295 K. It should be noted that thermal expansion, entropy and heat capacity for GP are much higher (∼1.5 to 2 times) than the ones for alkali metal perchlorates.[46] This can occur due to large molecular polyatomic guanidinium cations in GP.
Fig. 6

Calculated temperature dependencies of relative volume, volume thermal expansion coefficient, entropy S and heat capacity Cp for guanidinium perchlorate at ambient pressure (solid lines), P = 1 GPa (dashed lines) and P = 2 GPa (dash-dotted lines). Experimental points correspond to ambient pressure.[18]

We have also calculated GP total and partial (anionic and cationic) densities of electronic states (Fig. 7). The GP lower unoccupied states have anionic nature, whereas upper valence states for GP, in contrast to alkali metal perchlorates,[47] mainly corresponds to cationic states. Our calculated GP band gap energy Eg (4.2 eV) at room temperature is comparable with experimental one (4.9 eV) reported in ref. 17. We should note that the calculated Eg for perchlorate with organic guanidinium cation is smaller (by ∼10%) than Eg for alkali metal perchlorates reported in ref. 47. The band gap of GP, in contrast to alkali metal perchlorates,[47] decreases with pressure (Fig. 7).
Fig. 7

Calculated anionic, cationic and total densities of states DOS (the energy of highest occupied states was set to zero), semi-empirical pressure dependencies of band gap Eg for guanidinium perchlorate at T = 295 K (solid lines), 210 K (dashed lines), 100 K (dash-dotted lines) and at static lattice (dotted lines).

So, Eg at room temperature decreases by ∼5 and 1.4% when the pressure increases up to 2 GPa and the temperature decreases down to T = 100 K, respectively.

Conclusions

Thus, in this work we proposed simple semi-empirical method to calculate structure and properties of crystals under pressure at fixed temperatures. Only one experimental parameter (equilibrium volume) is used in this approach for isothermal pressure dependencies. We performed semi-empirical and ab initio calculations for guanidinium perchlorate, which allowed us to find pressure dependencies for its structure and properties (electronic, elastic, vibrational, thermal). We showed high compressibility and importance of taking into account of thermal effects for GP pressure behavior and mechanical properties. Pressure dependencies for interlayer and intralayer N⋯O distances correlate with c and a parameters, respectively. Moreover, we showed that hydrogen bond energy increases when the pressure increases. We revealed that GP hydrogen bonds become partially covalent in nature near the phase transition pressure. We also established that GP volume thermal expansion coefficient significantly decreases while the pressure increases. It was found out that the band gap of GP, in contrast to alkali metal perchlorates, decreases with pressure.

Conflicts of interest

There are no conflicts to declare.
  25 in total

1.  Atoms-in-molecules study of intra- and intermolecular bonding in the pentaerythritol tetranitrate crystal.

Authors:  Elizabeth A Zhurova; Adam I Stash; Vladimir G Tsirelson; Vladimir V Zhurov; Ekaterina V Bartashevich; Vladimir A Potemkin; A Alan Pinkerton
Journal:  J Am Chem Soc       Date:  2006-11-15       Impact factor: 15.419

2.  Temperature effects on the universal equation of state of solids.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1987-02-01

3.  A first-principles approach to finite temperature elastic constants.

Authors:  Y Wang; J J Wang; H Zhang; V R Manga; S L Shang; L-Q Chen; Z-K Liu
Journal:  J Phys Condens Matter       Date:  2010-05-20       Impact factor: 2.333

4.  Predicting crystal structures and properties of matter under extreme conditions via quantum mechanics: the pressure is on.

Authors:  Eva Zurek; Wojciech Grochala
Journal:  Phys Chem Chem Phys       Date:  2014-11-27       Impact factor: 3.676

5.  Compressibility Anisotropy and Electronic Properties of Oxyanionic Hydrates.

Authors:  Dmitry V Korabel'nikov; Yuriy N Zhuravlev
Journal:  J Phys Chem A       Date:  2017-08-22       Impact factor: 2.781

6.  Perspective: Fifty years of density-functional theory in chemical physics.

Authors:  Axel D Becke
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

7.  Simple guanidinium salts revisited: room-temperature ferroelectricity in hydrogen-bonded supramolecular structures.

Authors:  Marek Szafrański
Journal:  J Phys Chem B       Date:  2011-06-16       Impact factor: 2.991

8.  Pressure-induced phase transition in guanidinium perchlorate: a supramolecular structure directed by hydrogen bonding and electrostatic interactions.

Authors:  Shourui Li; Qian Li; Kai Wang; Xiao Tan; Mi Zhou; Bing Li; Bingbing Liu; Guangtian Zou; Bo Zou
Journal:  J Phys Chem B       Date:  2011-09-28       Impact factor: 2.991

9.  Thermal properties of Zn2(C8H4O4)2•C6H12N2 metal-organic framework compound and mirror symmetry violation of dabco molecules.

Authors:  Svetlana G Kozlova; Svyatoslav P Gabuda
Journal:  Sci Rep       Date:  2017-09-14       Impact factor: 4.379

10.  Full crystal structure, hydrogen bonding and spectroscopic, mechanical and thermodynamic properties of mineral uranopilite.

Authors:  Francisco Colmenero; Jakub Plášil; Vicente Timón; Jiří Čejka
Journal:  RSC Adv       Date:  2020-08-27       Impact factor: 4.036

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.