| Literature DB >> 35509862 |
Wei Ma1,2, Yujiao Xia1,3, Xiaoyan Wu4, Zheng Yue1,3, Xinyao Cheng4, Aaron Fenster5, Mingyue Ding1,3.
Abstract
Atherosclerotic carotid plaques have been shown to be closely associated with the risk of stroke. Since patients with symptomatic carotid plaques have a greater risk for stroke, stroke risk stratification based on the classification of carotid plaques into symptomatic or asymptomatic types is crucial in diagnosis, treatment planning, and medical treatment monitoring. A deep learning technique would be a good choice for implementing classification. Usually, to acquire a high-accuracy classification, a specific network architecture needs to be designed for a given classification task. In this study, we propose an object-specific four-path network (OSFP-Net) for stroke risk assessment by integrating ultrasound carotid plaques in both transverse and longitudinal sections of the bilateral carotid arteries. Each path of the OSFP-Net comprises of a feature extraction subnetwork (FE) and a feature downsampling subnetwork (FD). The FEs in the four paths use the same network structure to automatically extract features from ultrasound images of carotid plaques. The FDs use different object-specific pooling strategies for feature downsampling based on the observation that the sizes and shapes in the feature maps obtained from FEs should be different. The object-specific pooling strategies enable the network to accept arbitrarily sized carotid plaques as input and to capture a more informative context for improving the classification accuracy. Extensive experimental studies on a clinical dataset consisting of 333 subjects with 1332 carotid plaques show the superiority of our OSFP-Net against several state-of-the-art deep learning-based methods. The experimental results demonstrate better clinical agreement between the ground truth and the prediction, which indicates its great potential for use as a risk stratification and as a monitoring tool in the management of patients at risk for stroke.Entities:
Mesh:
Year: 2022 PMID: 35509862 PMCID: PMC9061007 DOI: 10.1155/2022/2014349
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.809
Figure 1Four different ultrasound images of plaques from a patient. (a) Transverse section of a plaque in the left carotid artery; (b) longitudinal section of a plaque in the left carotid artery; (c) transverse section of a plaque in the right carotid artery; (d) longitudinal section of a plaque in the right carotid artery.
Patient demographics and imaging parameters.
| Variable | Mean ± SD/Num (PCT) | Range | Count |
|---|---|---|---|
| Sex, % | 333 | ||
| Male | 204 (61.3) | ||
| Female | 129 (38.7) | ||
| Age, years | |||
| All | 69 ± 11 | 35–99 | 333 |
| Male | 68 ± 11 | 35–99 | 204 |
| Female | 71 ± 4 | 45–95 | 129 |
| Body mass index, kg/m2 | 22.9 ± 3.4 | 18.2–35.4 | 106 |
| Blood pressure, mm Hg | |||
| Systolic | 137 ± 15 | 76–203 | 333 |
| Diastolic | 78 ± 2 | 43–140 | 333 |
| Laboratory values, mmol/L | |||
| Total cholesterol | 4.26 ± 0.62 | 1.71–12.03 | 333 |
| Low-density lipoprotein cholesterol | 2.42 ± 0.19 | 0.81–7.76 | 333 |
| High-density lipoprotein cholesterol | 1.01 ± 0.21 | 0.09–3.83 | 333 |
| Triglycerides | 1.76 ± 0.29 | 0.29–18.58 | 333 |
| Risk factors, % | |||
| Hypertension | 218 (65.5) | 333 | |
| Hyperlipidemia | 58 (20.4) | 285 | |
| Diabetes | 93 (31.3) | 297 | |
| Ever smoked | 99 (43.0) | 230 | |
| FRS risk, % | 333 | ||
| <10 | 36 (10.8) | ||
| 10-20 | 144 (43.2) | ||
| >20 | 153 (45.9) | ||
| Imaging parameters | |||
| Ultrasound system manufacturer | Siemens | ||
| System model | SC2000 | ||
| Ultrasound probe | 9 L5 | ||
| Vessels images | Common, internal, external carotid arteries | ||
Figure 2ROI for plaques in the bilateral carotid artery images in both transverse and longitudinal sections. (a) ROI of the left transverse plaque image corresponding to Figure 1(a); (b) ROI of the left longitudinal plaque image corresponding to Figure 1(b); (c) ROI of the right transverse longitudinal image corresponding to Figure 1(c); (d) ROI of the right longitudinal plaque image corresponding to Figure 1(d).
Figure 3Architecture of the object-specific four-path network (OSFP-Net). (a) The OSFP-Net is comprised of four paths for inputs of the bilateral carotid plaque images in both the transverse and longitudinal sections. Each path contains a feature extraction subnetwork (FE) and a feature downsampling subnetwork (FD). (b) The FE employs the same 5 convolutional and pooling blocks as VGG16, which are mainly used for image feature extraction. (c) The FDLS applies a multilevel strip pooling (MSP) strategy for the carotid plaques in the longitudinal section. (d) The FDTS employs a spatial pyramid pooling (SPP) strategy for the carotid plaques in the transverse section.
Different settings and outputs in FD modules. k refers to the number of feature maps.
| Paths | Input image | FDs | Total strips/bins | Outputs | |||
|---|---|---|---|---|---|---|---|
| Module | 1st-level | 2nd-level | 3rd-level | ||||
| 1 | LT | SPP | 1 × 1 | 2 × 2 | 3 × 3 | 14 bins | 14 |
| 2 | LL | MSP | 1 × 1 | 2 × 1 | 3 × 1 | 6 strips | 6 |
| 3 | RT | SPP | 1 × 1 | 2 × 2 | 3 × 3 | 14 bins | 14 |
| 4 | RL | MSP | 1 × 1 | 2 × 1 | 3 × 1 | 6 strips | 6 |
Comparison of sample size and data set partitioning among the baseline VGG16, FP-VGG16, and OSFP-Net.
| Method | Path | Plaques | No. of input | No. of samples | Training set | Testing set |
|---|---|---|---|---|---|---|
| VGG16 | One | 1332 | 1 | 1332 | 1068 | 264 |
| FP-VGG16 | Four | 1332 | 4 | 333 | 267 | 66 |
| OSFP-Net | Four | 1332 | 4 | 333 | 267 | 66 |
Figure 4Accuracy comparison between the baseline VGG16, FP-VGG16, and OSFP-Net as a function of network epochs.
Sensitivity, specificity, precision, and F1-score comparisons between the baseline VGG16, FP-VGG16, and OSFP-Net. The best results are highlighted in bold. The listed metrics were obtained on the test dataset.
| Fold | Method | Metrics (%) | |||
|---|---|---|---|---|---|
| SEN | SPE | PRE |
| ||
| 1 | VGG16 | 79.5 | 83.0 | 66.0 | 72.1 |
| FP-VGG16 | 87.5 |
|
| 93.3 | |
| OSFP-Net |
| 95.2 | 92.0 |
| |
| 2 | VGG16 | 74.0 | 85.5 | 75.5 | 74.7 |
| FP-VGG16 | 80.0 | 95.7 | 88.9 | 84.2 | |
| OSFP-Net |
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| 3 | VGG16 | 81.6 | 90.5 | 83.3 | 82.5 |
| FP-VGG16 | 80.0 | 100.0 | 100.0 | 88.9 | |
| OSFP-Net |
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|
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| 4 | VGG16 | 84.7 | 89.2 | 86.2 | 85.5 |
| FP-VGG16 | 95.7 | 90.7 | 84.6 | 89.8 | |
| OSFP-Net |
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| 5 | VGG16 | 88.9 | 91.8 | 80.0 | 84.2 |
| FP-VGG16 | 93.1 |
|
| 96.4 | |
| OSFP-Net |
| 97.3 | 96.7 |
| |
| Avg. ±Std. | VGG16 | 81.8 ± 5.0 | 88.0 ± 3.3 | 78.2 ± 7.1 | 79.8 ± 5.4 |
| FP-VGG16 | 88.4 ± 6.8 | 97.3 ± 3.7 | 94.7 ± 6.6 | 91.2 ± 4.7 | |
| OSFP-Net |
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Figure 5Accuracy comparison using the dataset with or without data augmentation.
Classification metrics were obtained on the testing set using OSFP-Net with or without data augmentation on the training set. The p value for the T-tests is shown in the bracket. DA√ = with augmentation, DA × = no augmentation.
| DA | Sensitivity (%) | Specificity (%) | Precision (%) |
|
|---|---|---|---|---|
| √ | 94.5 ( | 99.1 ( | 98.1 ( | 96.2 ( |
| × | 96.2 | 97.6 | 95.8 | 95.9 |
The comparative accuracy, sensitivity, specificity, precision, and F1-score results of the proposed OSFP-Net and other well-known classification methods. The p value for the statistical T-test is shown in the brackets.
| Methods | Accuracy (%) | Sensitivity (%) | Specificity (%) | Precision (%) |
|
|---|---|---|---|---|---|
| ResNext50 | 88.4 (1.8E-08) | 88.7 (0.026) | 88.0 (0.0002) | 79.7 (0.0001) | 83.9 (0.0002) |
| DenseNet121 | 88.2 (2.8E-09) | 81.6 (0.001) | 91.7 (0.0008) | 83.6 (0.002) | 82.5 (0.0002) |
| EfficientNet-b7 | 86.5 (1.2E-10) | 83.0 (0.0009) | 88.4 (7.8E-05) | 78.7 (0.0007) | 80.7 (0.0002) |
| OSFP-Net | 97.3 | 96.2 | 97.6 | 95.8 | 95.9 |
Figure 6Confusion matrices of the compared networks for the classification of carotid plaques. SP and AP represent symptomatic and asymptomatic patients, respectively.
Figure 7ROC curves for discriminating symptomatic and asymptomatic patients based on carotid plaque images for all the compared networks using 5-fold cross-validation on the collected dataset. AUC: area under the curve.