Literature DB >> 3550799

Macromolecular crowding increases binding of DNA polymerase to DNA: an adaptive effect.

S B Zimmerman, B Harrison.   

Abstract

Macromolecular crowding extends the range of ionic conditions supporting high DNA polymerase reaction rates. Reactions tested were nick-translation and gap-filling by DNA polymerase I of Escherichia coli, nuclease and polymerase activities of the large fragment of that polymerase, and polymerization by the T4 DNA polymerase. For all of these reactions, high concentrations of nonspecific polymers increased enzymatic activity under otherwise inhibitory conditions resulting from relatively high ionic strength. The primary mechanism of the polymer effect seems to be to increase the binding of polymerase to DNA. We suggest that this effect on protein-DNA complexes is only one example of a general "metabolic buffering" action of crowded solutions on a variety of macromolecular interactions.

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Year:  1987        PMID: 3550799      PMCID: PMC304543          DOI: 10.1073/pnas.84.7.1871

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Solute concentrations within cells of halophilic and non-halophilic bacteria.

Authors:  J H CHRISTIAN; J A WALTHO
Journal:  Biochim Biophys Acta       Date:  1962-12-17

2.  Dependence of the putrescine content of Escherichia coli on the osmotic strength of the medium.

Authors:  G F Munro; K Hercules; J Morgan; W Sauerbier
Journal:  J Biol Chem       Date:  1972-02-25       Impact factor: 5.157

3.  Selective elimination of the exonuclease activity of the deoxyribonucleic acid polymerase from Escherichia coli B by limited proteolysis.

Authors:  H Klenow; I Henningsen
Journal:  Proc Natl Acad Sci U S A       Date:  1970-01       Impact factor: 11.205

4.  Enzyme reactions in polymer media.

Authors:  T C Laurent
Journal:  Eur J Biochem       Date:  1971-08-25

5.  Effect of monovalent cations on the activity of the DNA polymerase of Escherichia coli B.

Authors:  H Klenow; I Henningsen
Journal:  Eur J Biochem       Date:  1969-05-01

6.  Replication of lambda dv plasmid in vitro promoted by purified lambda O and P proteins.

Authors:  T Tsurimoto; K Matsubara
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

7.  Enzymatic replication of the origin of the Escherichia coli chromosome.

Authors:  R S Fuller; J M Kaguni; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

8.  Macromolecular crowding allows blunt-end ligation by DNA ligases from rat liver or Escherichia coli.

Authors:  S B Zimmerman; B H Pheiffer
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

Review 9.  How crowded is the cytoplasm?

Authors:  A B Fulton
Journal:  Cell       Date:  1982-09       Impact factor: 41.582

10.  Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo.

Authors:  Y Kao-Huang; A Revzin; A P Butler; P O'Conner; D W Noble; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

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  43 in total

1.  Macromolecular crowding and volume perception in dog red cells.

Authors:  J C Parker; G C Colclasure
Journal:  Mol Cell Biochem       Date:  1992-09-08       Impact factor: 3.396

2.  Model for the role of macromolecular crowding in regulation of cellular volume.

Authors:  A P Minton; G C Colclasure; J C Parker
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

3.  Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences.

Authors:  Jyotica Batra; Ke Xu; Sanbo Qin; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

4.  Compartmentalization by directional gene expression.

Authors:  Shirley S Daube; Dan Bracha; Amnon Buxboim; Roy H Bar-Ziv
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

5.  Surface-directed DNA condensation in the absence of soluble multivalent cations.

Authors:  Y Fang; J H Hoh
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

6.  Origin auxiliary sequences can facilitate initiation of simian virus 40 DNA replication in vitro as they do in vivo.

Authors:  Z S Guo; C Gutierrez; U Heine; J M Sogo; M L Depamphilis
Journal:  Mol Cell Biol       Date:  1989-09       Impact factor: 4.272

7.  Implications of macromolecular crowding for signal transduction and metabolite channeling.

Authors:  J M Rohwer; P W Postma; B N Kholodenko; H V Westerhoff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

8.  Urea inhibits NaK2Cl cotransport in human erythrocytes.

Authors:  J Lim; C Gasson; D M Kaji
Journal:  J Clin Invest       Date:  1995-11       Impact factor: 14.808

9.  Guiding protein aggregation with macromolecular crowding.

Authors:  Larissa A Munishkina; Atta Ahmad; Anthony L Fink; Vladimir N Uversky
Journal:  Biochemistry       Date:  2008-07-30       Impact factor: 3.162

10.  Understanding how the crowded interior of cells stabilizes DNA/DNA and DNA/RNA hybrids-in silico predictions and in vitro evidence.

Authors:  Karthik S Harve; Ricky Lareu; Raj Rajagopalan; Michael Raghunath
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

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