Literature DB >> 35499326

Host-Associated Phages Disperse across the Extraterrestrial Analogue Antarctica.

Janina Rahlff1, Till L V Bornemann1, Anna Lopatina2, Konstantin Severinov3, Alexander J Probst1,4.   

Abstract

Extreme Antarctic conditions provide one of the closest analogues of extraterrestrial environments. Since air and snow samples, especially from polar regions, yield DNA amounts in the lower picogram range, binning of prokaryotic genomes is challenging and renders studying the dispersal of biological entities across these environments difficult. Here, we hypothesized that dispersal of host-associated bacteriophages (adsorbed, replicating, or prophages) across the Antarctic continent can be tracked via their genetic signatures, aiding our understanding of virus and host dispersal across long distances. Phage genome fragments (PGFs) reconstructed from surface snow metagenomes of three Antarctic stations were assigned to four host genomes, mainly Betaproteobacteria, including Ralstonia spp. We reconstructed the complete genome of a temperate phage with nearly complete alignment to a prophage in the reference genome of Ralstonia pickettii 12D. PGFs from different stations were related to each other at the genus level and matched similar hosts. Metagenomic read mapping and nucleotide polymorphism analysis revealed a wide dispersal of highly identical PGFs, 13 of which were detected in seawater from the Western Antarctic Peninsula at a distance of 5,338 km from the snow sampling stations. Our results suggest that host-associated phages, especially of Ralstonia sp., disperse over long distances despite the harsh conditions of the Antarctic continent. Given that 14 phages associated with two R. pickettii draft genomes isolated from space equipment were identified, we conclude that Ralstonia phages are ideal mobile genetic elements to track dispersal and contamination in ecosystems relevant for astrobiology. IMPORTANCE Host-associated phages of the bacterium Ralstonia identified in snow samples can be used to track microbial dispersal over thousands of kilometers across the Antarctic continent, which functions as an extraterrestrial analogue because of its harsh environmental conditions. Due to the presence of these bacteria carrying genome-integrated prophages on space-related equipment and the potential for dispersal of host-associated phages demonstrated here, our work has implications for planetary protection, a discipline in astrobiology interested in preventing contamination of celestial bodies with alien biomolecules or forms of life.

Entities:  

Keywords:  Ralstonia; astrovirology; cryosphere; extreme environments; metagenomics; viruses

Mesh:

Year:  2022        PMID: 35499326      PMCID: PMC9128509          DOI: 10.1128/aem.00315-22

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   5.005


  101 in total

1.  Global distribution of nearly identical phage-encoded DNA sequences.

Authors:  Mya Breitbart; Jon H Miyake; Forest Rohwer
Journal:  FEMS Microbiol Lett       Date:  2004-07-15       Impact factor: 2.742

2.  Genomic characterization of ϕRS603, a filamentous bacteriophage that is infectious to the phytopathogen Ralstonia solanacearum.

Authors:  Truong Thi Bich Van; Shohei Yoshida; Kaito Miki; Akihiro Kondo; Kaeko Kamei
Journal:  Microbiol Immunol       Date:  2014-12       Impact factor: 1.955

Review 3.  Astrovirology: Viruses at Large in the Universe.

Authors:  Aaron J Berliner; Tomohiro Mochizuki; Kenneth M Stedman
Journal:  Astrobiology       Date:  2018-01-10       Impact factor: 4.335

Review 4.  Human-mediated dispersal of terrestrial species between Antarctic biogeographic regions: A preliminary risk assessment.

Authors:  Kevin A Hughes; Peter Convey; Luis R Pertierra; Greta C Vega; Pedro Aragón; Miguel Á Olalla-Tárraga
Journal:  J Environ Manage       Date:  2018-11-21       Impact factor: 6.789

5.  Infection by Ralstonia species in cystic fibrosis patients: identification of R. pickettii and R. mannitolilytica by polymerase chain reaction.

Authors:  Tom Coenye; Peter Vandamme; John J LiPuma
Journal:  Emerg Infect Dis       Date:  2002-07       Impact factor: 6.883

6.  Characterization of the survival ability of Cupriavidus metallidurans and Ralstonia pickettii from space-related environments.

Authors:  K Mijnendonckx; A Provoost; C M Ott; K Venkateswaran; J Mahillon; N Leys; R Van Houdt
Journal:  Microb Ecol       Date:  2012-12-05       Impact factor: 4.552

7.  Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity.

Authors:  Simon Roux; Joanne B Emerson; Emiley A Eloe-Fadrosh; Matthew B Sullivan
Journal:  PeerJ       Date:  2017-09-21       Impact factor: 2.984

8.  Spatial Variability of Antarctic Surface Snow Bacterial Communities.

Authors:  Lucie A Malard; Marie Šabacká; Iordanis Magiopoulos; Matt Mowlem; Andy Hodson; Martyn Tranter; Martin J Siegert; David A Pearce
Journal:  Front Microbiol       Date:  2019-03-26       Impact factor: 5.640

9.  Single-Stranded DNA Viruses in Antarctic Cryoconite Holes.

Authors:  Pacifica Sommers; Rafaela S Fontenele; Tayele Kringen; Simona Kraberger; Dorota L Porazinska; John L Darcy; Steven K Schmidt; Arvind Varsani
Journal:  Viruses       Date:  2019-11-04       Impact factor: 5.048

10.  Two Inducible Prophages of an Antarctic Pseudomonas sp. ANT_H14 Use the Same Capsid for Packaging Their Genomes - Characterization of a Novel Phage Helper-Satellite System.

Authors:  Lukasz Dziewit; Monika Radlinska
Journal:  PLoS One       Date:  2016-07-07       Impact factor: 3.240

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  1 in total

1.  Women in the European Virus Bioinformatics Center.

Authors:  Franziska Hufsky; Ana Abecasis; Patricia Agudelo-Romero; Magda Bletsa; Katherine Brown; Claudia Claus; Stefanie Deinhardt-Emmer; Li Deng; Caroline C Friedel; María Inés Gismondi; Evangelia Georgia Kostaki; Denise Kühnert; Urmila Kulkarni-Kale; Karin J Metzner; Irmtraud M Meyer; Laura Miozzi; Luca Nishimura; Sofia Paraskevopoulou; Alba Pérez-Cataluña; Janina Rahlff; Emma Thomson; Charlotte Tumescheit; Lia van der Hoek; Lore Van Espen; Anne-Mieke Vandamme; Maryam Zaheri; Neta Zuckerman; Manja Marz
Journal:  Viruses       Date:  2022-07-12       Impact factor: 5.818

  1 in total

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