| Literature DB >> 35498031 |
Ruihao Li1,2, Zuoguan Chen1, Liang Gui1,2, Zhiyuan Wu1, Yuqing Miao1,2, Qing Gao1,2, Yongpeng Diao1, Yongjun Li1,2.
Abstract
Background: Varicose veins are found to be associated with increased risk of venous thromboembolism (VTE) in many observational studies, but whether varicose veins are causally associated with VTE remains unclear. Therefore, we used a series of Mendelian randomization (MR) methods to investigate that association.Entities:
Keywords: Mendelian randomization; deep vein thrombosis; pulmonary embolism; varicose veins; venous thromboembolism
Year: 2022 PMID: 35498031 PMCID: PMC9047357 DOI: 10.3389/fcvm.2022.849027
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
Details of SNPs selected as instrumental variables.
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| rs11121615 | T | C | −0.284 | 0.015 | 6.55E-81 | 0.690 | CASZ1 |
| rs72787716 | T | C | −0.098 | 0.017 | 4.72E-09 | 0.209 | LBH |
| rs6546368 | C | T | 0.155 | 0.014 | 3.59E-27 | 0.657 | AC017083.3 |
| rs2734045 | A | G | 0.100 | 0.014 | 2.21E-13 | 0.482 | LINC01565 |
| rs28558138 | C | G | −0.131 | 0.014 | 2.52E-21 | 0.420 | snoU13 |
| rs2250127 | A | G | 0.144 | 0.016 | 5.74E-20 | 0.247 | LINC01184 |
| rs11135046 | T | G | −0.121 | 0.014 | 4.97E-19 | 0.543 | EBF1 |
| rs1155207 | G | A | −0.106 | 0.014 | 7.46E-15 | 0.487 | HIST1H3PS1 |
| rs62401797 | G | C | −0.146 | 0.026 | 1.09E-08 | 0.079 | RP11-228O6.2 |
| rs2800709 | G | T | −0.078 | 0.014 | 7.91E-09 | 0.519 | RSPO3 |
| rs75731123 | G | A | −0.108 | 0.019 | 1.28E-08 | 0.149 | RP1L1 |
| rs10817784 | G | A | 0.094 | 0.016 | 1.49E-09 | 0.738 | DEC1 |
| rs2083714 | G | A | 0.081 | 0.014 | 1.92E-09 | 0.499 | SBF2 |
| rs55726902 | A | G | 0.100 | 0.016 | 2.08E-10 | 0.242 | HDAC7 |
| rs41286076 | T | C | 0.092 | 0.015 | 3.03E-09 | 0.256 | KLF5 |
| rs4772697 | G | A | 0.083 | 0.014 | 3.59E-09 | 0.361 | RP11-252M24.1 |
| rs437564 | T | C | 0.085 | 0.014 | 2.60E-09 | 0.377 | RP11-1348G14.4 |
| rs34457921 | G | A | −0.088 | 0.015 | 4.88E-09 | 0.298 | ZFPM1 |
| rs2911463 | A | G | −0.190 | 0.015 | 1.07E-37 | 0.687 | PIEZO1 |
| rs236548 | A | G | −0.119 | 0.016 | 3.16E-14 | 0.745 | CALM2P1 |
| rs2241173 | G | A | −0.091 | 0.014 | 3.15E-11 | 0.575 | LINC01152 |
| rs6021277 | T | C | 0.102 | 0.014 | 8.16E-14 | 0.460 | NFATC2 |
| rs6062619 | G | A | −0.113 | 0.016 | 3.84E-13 | 0.268 | SOX18 |
EAF, effective allele frequency; SE, standard error; SNP, single-nucleotide polymorphism.
Figure 1Mendelian randomization model in this study. BMI, body mass index; DVT, deep vein thrombosis; IV, instrumental variables; PE, pulmonary embolism; SNP, single-nucleotide polymorphism; VTE, venous thromboembolism. Assumption 1: the genetic variants should be associated with exposure. Assumption 2: the genetic variant should not be associated with confounders of the exposure-outcome relationship. Assumption 3: the genetic variants exert effects on the outcome only via the exposure.
Figure 2Flow of the study. CAUSE, Causal Analysis Using Summary Effect estimates; IVW, inverse-variance weighted; MR, Mendelian randomization; MR-PRESSO, Mendelian randomization pleiotropy residual sum and outlier.
Figure 3Forest plots of causal effect of varicose vein on venous thromboembolic diseases. (Left) MR analysis using all 21 qualified SNPs. (Right) MR analysis using 19 SNPs that have no genome-wide association with confounders. CI, confidence interval; OR, odds ratio.
Figure 4Forest plots of multivariable MR adjusted for BMI and/or height.
Figure 5Forest plots of two-step MR with BMI and height.