Literature DB >> 35492052

Prokaryote playhouse: A low-cost, laser-cut acrylic incubator for optogenetic bacterial culture.

Jin Wu1,2, David Dellal1, Steven Wasserman3.   

Abstract

Bacterial photography is a printing technique that replaces conventional photochemistry with a living film of engineered Escherichia coli. Many biology teaching labs have adopted monochrome bacterial photography because it offers a captivating playground for illustrating central concepts and lab techniques in biological engineering, particularly in the fields of synthetic biology and optogenetics. Recent improvements have increased the number of color channels from one to three. A key practical challenge in three-color printing is to expose a Petri dish loaded with engineered bacteria to a trichromatic image while maintaining it at 37 °C. Prokaryote Playhouse is a compact, inexpensive, open-source, benchtop incubator for light-sensitive bacterial cultures that makes bacterial photography and similar bacterial optogenetic methods more accessible to teaching labs, makerspaces, and research labs. The system includes a laser-cut, light-tight enclosure; digital thermostat; heated sample shelf; single-board computer; and miniature projector. We built a fleet of Prokaryote Playhouses that students have used to produce hundreds of bacterial photographs in a wide range of educational experiences, ranging from a four-hour introduction to synthetic biology and wet lab techniques to a six-week exploratory class for first-year students at MIT.
© 2021 The Author(s).

Entities:  

Keywords:  Bacterial culture; Education; Genetic engineering; Incubator; Optogenetics; Synthetic biology

Year:  2021        PMID: 35492052      PMCID: PMC9041274          DOI: 10.1016/j.ohx.2021.e00184

Source DB:  PubMed          Journal:  HardwareX        ISSN: 2468-0672


  6 in total

1.  Synthetic biology: engineering Escherichia coli to see light.

Authors:  Anselm Levskaya; Aaron A Chevalier; Jeffrey J Tabor; Zachary Booth Simpson; Laura A Lavery; Matthew Levy; Eric A Davidson; Alexander Scouras; Andrew D Ellington; Edward M Marcotte; Christopher A Voigt
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

2.  Plate-based assays for light-regulated gene expression systems.

Authors:  Jeffrey J Tabor
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

3.  Engineering RGB color vision into Escherichia coli.

Authors:  Jesus Fernandez-Rodriguez; Felix Moser; Miryoung Song; Christopher A Voigt
Journal:  Nat Chem Biol       Date:  2017-05-22       Impact factor: 15.040

4.  Light controlled 3D micromotors powered by bacteria.

Authors:  Gaszton Vizsnyiczai; Giacomo Frangipane; Claudio Maggi; Filippo Saglimbeni; Silvio Bianchi; Roberto Di Leonardo
Journal:  Nat Commun       Date:  2017-06-28       Impact factor: 14.919

5.  Optogenetic control of gut bacterial metabolism to promote longevity.

Authors:  Lucas A Hartsough; Mooncheol Park; Matthew V Kotlajich; John Tyler Lazar; Bing Han; Chih-Chun J Lin; Elena Musteata; Lauren Gambill; Meng C Wang; Jeffrey J Tabor
Journal:  Elife       Date:  2020-12-16       Impact factor: 8.140

6.  Hierarchy of non-glucose sugars in Escherichia coli.

Authors:  Guy Aidelberg; Benjamin D Towbin; Daphna Rothschild; Erez Dekel; Anat Bren; Uri Alon
Journal:  BMC Syst Biol       Date:  2014-12-24
  6 in total

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