| Literature DB >> 35484105 |
Pei-Fen Kuan1, Xiaohua Yang2, Roman Kotov3, Sean Clouston4, Evelyn Bromet3, Benjamin J Luft5.
Abstract
Metabolomics has yielded promising insights into the pathophysiology of post-traumatic stress disorder (PTSD). The current study expands understanding of the systems-level effects of metabolites by using global metabolomics and complex lipid profiling in plasma samples from 124 World Trade Center responders (56 PTSD, 68 control) on 1628 metabolites. Differential metabolomics analysis identified hexosylceramide HCER(26:1) associated with PTSD at FDR < 0.1. The multi-metabolite composite score achieved an AUC of 0.839 for PTSD versus unaffected control classification. Independent component analysis identified three metabolomic modules significantly associated with PTSD. These modules were significantly enriched in bile acid metabolism, fatty acid metabolism and pregnenolone steroids, which are involved in innate immunity, inflammatory process and neuronal excitability, respectively. Integrative analysis of metabolomics and our prior proteomics datasets on subsample of 96 responders identified seven proteomic modules significantly correlated with metabolic modules. Overall, our findings shed light on the molecular alterations and identify metabolomic-proteomic signatures associated with PTSD by using machine learning and network approaches to enhance understanding of the pathways implicated in PTSD. If present results are confirmed in follow-up studies, they may inform development of novel treatments.Entities:
Mesh:
Year: 2022 PMID: 35484105 PMCID: PMC9050707 DOI: 10.1038/s41398-022-01940-y
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 7.989
Clinical characteristics of samples in discovery and replication subsamples. The p-values were computed from t-tests (for age and BMI) and chi-squared test (for race).
| All | PTSD | Control | |
|---|---|---|---|
| Age | |||
| Mean (SD) | 56.2 (8.0) | 53.1 (7.4) | 0.028 |
| Race | |||
| Caucasian | 51 (91.1) | 57 (83.8) | 0.353 |
| Other | 5 (8.9) | 11 (16.2) | |
| BMI | |||
| Mean (SD) | 31.6 (4.8) | 30.8 (4.7) | 0.319 |
| Age | |||
| Mean (SD) | 55.7 (7.8) | 52.7 (7.6) | 0.071 |
| Race | |||
| Caucasian | 35 (89.7) | 41 (83.7) | 0.609 |
| Other | 4 (10.3) | 8 (16.3) | |
| BMI | |||
| Mean (SD) | 31.2 (4.8) | 31.0 (4.6) | 0.841 |
| Age | |||
| Mean (SD) | 57.4 (8.4) | 54.3 (7.1) | 0.238 |
| Race | |||
| Caucasian | 16 (94.1) | 16 (84.2) | 0.680 |
| Other | 1 (5.9) | 3 (15.8) | |
| BMI | |||
| Mean (SD) | 32.5 (5.1) | 30.1 (5.0) | 0.153 |
List of metabolites retained in differential metabolomics analysis (HCER (26:1)) or multi-metabolite composite score (5-oxoproline, 6-oxopiperidine-2-carboxylate, beta-hydroxyisovalerate, caproate (6:0) and glycocholate).
| Discovery | Replication | Combined | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Metabolite | Super pathway | Sub pathway | Coef | FDR | Coef | Coef | FDR | |||
| HCER (26:1) | Sphingolipids | Hexosylceramide | 0.86 | <0.001 | 0.03 | 0.47 | 0.21 | 0.74 | <0.001 | 0.06 |
| 5-oxoproline | Amino Acid | Glutathione Metabolism | 0.67 | 0.001 | 0.21 | 0.62 | 0.09 | 0.65 | <0.001 | 0.13 |
| 6-oxopiperidine-2-carboxylate | Amino Acid | Lysine Metabolism | 0.62 | 0.003 | 0.21 | 0.69 | 0.06 | 0.62 | <0.001 | 0.15 |
| beta-hydroxyisovalerate | Amino Acid | Leucine, Isoleucine and Valine Metabolism | 0.76 | <0.001 | 0.18 | 0.43 | 0.24 | 0.63 | <0.001 | 0.15 |
| caproate (6:0) | Lipid | Medium Chain Fatty Acid | 0.72 | <0.001 | 0.19 | 0.26 | 0.5 | 0.58 | 0.001 | 0.25 |
| glycocholate | Lipid | Primary Bile Acid Metabolism | 0.66 | 0.002 | 0.21 | 0.71 | 0.05 | 0.66 | <0.001 | 0.13 |
Fig. 1Multi-metabolite model evaluation.
A AUC plot in the test set. B Plot of sensitivity versus specificity. The vertical dotted line corresponds to the optimal cutoff according to the Youden method. C Boxplot comparing the multi-metabolite composite score in the test set.
Fig. 2Metabolic pathway analyses.
In each plot, the length of the bar corresponds to the ratio of the number of metabolites in the pathway to the number of metabolites in the module, whereas the color corresponds to the p-value gradient. The bars are ordered by p-values. A Bar plot showing the list of significant pathways for the M_IC7 module. B Bar plot showing the list of significant pathways for the M_IC9 module. C Bar plot showing the list of significant pathways for the M_IC16 module.
Fig. 3Heatmap depicting the correlations among the 3 metabolomic modules significantly associated with PTSD status and 7 proteomic modules which are correlated with these 3 metabolomic modules.
The correlations with p < 0.05 corresponded to the cell with texts.