| Literature DB >> 35478439 |
Jie Song1, Yedan Liu1, Ya Guo2, Peipei Liu1, Fei Li1, Chengqing Yang1, Xiaoyu Pan1, Liping Yi1, Fan Fan3, Han Zhao4, Zongbo Chen1.
Abstract
INTRODUCTION: This study aimed to explore the association between the IRAK4 polymorphism rs4251545 and the severity of enterovirus 71 (EV71) infection in Chinese children.Entities:
Keywords: EV71 infection; IL-6/NF-κB; IRAK4; single-nucleotide polymorphism
Mesh:
Substances:
Year: 2022 PMID: 35478439 PMCID: PMC9017637 DOI: 10.1002/iid3.614
Source DB: PubMed Journal: Immun Inflamm Dis ISSN: 2050-4527
Figure 1The inclusion/exclusion criteria of this study
Primers and PCR conditions
| Item | Sequence (5'−3') | The PCR conditions | |
|---|---|---|---|
| IRAK4 rs4251545 | Forward primer | GATGAATGATGCTGATTCCACTTCAG | 95°C for 2 min; 11 cycles at 94°C for 20 s, 65–0.5°C/cycle for 40 s, and 72°C for 1 min 30 s; and 24 cycles at 94°C for 20 s, 59°C for 30 s, and 72°C for 1 min 30 s, followed by 72°C for 2 min and holding at 4°C. |
| Reverse primer | TGAACCCCACCCCTTTCACTTT | ||
| IRAK4 rs4251545 probes | FA | TGTTCGTGGGCCGGATTAGTAATGATGCTGATTCCACTTCAGTTGCAA | 38 cycles at 94°C for 1 min and 56°C for 4 min, and then holding at 4°C. |
| FG | TCTCTCGGGTCAATTCGTCCTTAATGATGCTGATTCCACTTCAGTTGTAG | ||
| FP | CTATGTACTCTGTTGCTAGTCAATGTCTGCTTTTTTT. | ||
| IRAK4 | Forward primer | TGATGGAGATGACCTCTGCT | 95°C for 30 s, followed by 40 cycles of 95°C for 10 s, and 60°C for 30 s. |
| Reverse primer: | GGTGGAGTACCATCCAAGCAA | ||
| β‐actin | Forward primer | AAGAGAGGCACCTCACCCT | |
| Reverse primer: | GGAAGGAAGGCTGGAAG | ||
| EV71 VP1 | EV71‐S | GTTCTTAACTCACATAGCA | |
| EV71‐A | TTGCAAAAACTGAGGGTT |
IRAK4 rs4251545G/A genotype and allele frequencies in the EV71‐infected group
| Item |
| Genotype | Allele | |||
|---|---|---|---|---|---|---|
| AA | GA | GG | A | G | ||
| Actual frequency | 617 | 3 (0.5%) | 95 (15.4%) | 519 (84.1%) | 101 (8.2%) | 1133 (91.8%) |
| H−W theoretical frequency | 4 (0.6%) | 93 (15.1%) | 520 (84.3%) | |||
|
| 0.369 | |||||
|
| .544 | |||||
IRAK4 rs4251545G/A genotype and allele frequencies in the controls
| Item |
| Genotype | Allele | |||
|---|---|---|---|---|---|---|
| AA | GA | GG | A | G | ||
| Actual frequency | 410 | 3 (0.7%) | 43 (10.5%) | 364 (88.8%) | 49 (6.0%) | 771 (94.0%) |
| H−W theoretical frequency | 1 (0.2%) | 46 (11.2%) | 362 (88.3%) | |||
|
| 1.823 | |||||
|
| .177 | |||||
Genotype and allele frequencies of the IRAK4 rs4251545G/A polymorphism in EV71‐infected patients and controls
| IRAK4 rs4251545 G/A | EV71‐infected patients ( | Mild cases ( | Severe cases ( | Controls ( |
|
| OR (95% CI) |
|---|---|---|---|---|---|---|---|
| Genotype | |||||||
| 10.546 | .001 | 1.988 (1.305−3.030) | |||||
| 1.469 | .226 | 1.287 (0.855−1.938) | |||||
| GA + AA | 98 (15.9%) | 61 (14.0%) | 37 (20.4%) | 46 (11.2%) | 8.847 | .003 | 2.033 (1.266−3.266) |
| GG | 519 (84.1%) | 375 (86.0%) | 144 (79.6%) | 364 (88.8%) | 3.984 | .046 | 1.580 (1.006−2.481) |
| Allele | |||||||
| 3.552 | .059 | 1.403 (0.985−1.997) | |||||
| 0.887 | .346 | 1.204 (0.818−1.774) | |||||
| A | 101 (8.2%) | 62 (7.1%) | 39 (10.8%) | 49 (6.0%) | 8.390 | .004 | 1.900 (1.223−2.950) |
| G | 1133 (91.8%) | 810 (92.9%) | 323 (89.2%) | 771 (94.0%) | 4.568 | .033 | 1.577 (1.036−2.403) |
Abbreviations: CI, confidence interval; OR, odds ratio.
EV71‐infected patients versus controls using the χ 2 test with a 2 × 2 contingency table.
Mild cases in EV71‐infected patients versus controls using the χ 2 test with a 2 × 2 contingency table.
Severe cases versus controls in EV71‐infected patients using the χ 2 test with a 2 × 2 contingency table.
Severe versus mild cases in EV71‐infected patients using the χ 2 test with a 2 × 2 contingency table.
Genotype and allele frequencies of the IRAK4 rs4251545G/A polymorphism in EV71 encephalitis and nonencephalitis
| IRAK4 rs4251545G/A | EV71 encephalitis ( | Nonencephalitis ( | Controls ( |
|
| OR (95% CI) |
|---|---|---|---|---|---|---|
| Genotype | 9.799 | .002 | 2.548 (1.397−4.648) | |||
| GA + AA | 19 (24.4%) | 18 (17.5%) | 46 (11.2%) | 2.951 | .086 | 1.676 (0.925−3.035) |
| GG | 59 (75.6%) | 85 (82.5%) | 364 (88.8%) | 1.293 | .255 | 0.658 (0.318−1.358) |
| Allele | ||||||
| 9.347 | .002 | 2.314 (1.334−3.506) | ||||
| A | 20 (12.8%) | 19 (9.2%) | 49 (6.0%) | 2.806 | .094 | 1.599 (0.919−2.780) |
| G | 136 (87.2%) | 187 (90.8%) | 771 (94.0%) | 1.195 | .274 | 0.691 (0.355−1.344) |
Abbreviations: CI, confidence interval; OR, odds ratio.
EV71 encephalitis patients versus controls using the χ 2 test with a 2 × 2 contingency table.
Nonencephalitis patients versus controls using the χ 2 test with a 2 × 2 contingency table.
EV71 encephalitis patients versus nonencephalitis patients in EV71‐infected patients using the χ 2 test with a 2 × 2 contingency table.
Characteristic of EV71‐infected group according to different genotypes
| Parameters | GA + AA ( | GG ( |
|
|
|---|---|---|---|---|
| Male ( | 25 | 228 | ||
| Female ( | 41 | 291 | 0.874 | .350 |
| Age (years) | 6.3 ± 2.4 | 6.4 ± 2.2 | −0.359 | .719 |
| Duration of fever (days) | 4.0 (2.0−6.0) | 3.0 (1.0−6.0) | 1.971 | .049 |
| WBC (×109/L) | 9.2 ± 1.9 | 6.6 ± 1.8 | 12.837 | <.001 |
| CRP (mg/L) | 14.2 ± 3.8 | 14.9 ± 3.9 | −1.618 | .099 |
| ALT (U/L) | 22.5 (15.0−33.5) | 30.0 (17.0−49.0) | 3.442 | .001 |
| AST (U/L) | 36.5 (21.0−50.3) | 37.0 (22.0−39.0) | 0.593 | .553 |
| CK‐MB (U/L) | 20.0 (14.0−29.0) | 20.0 (13.0−28.0) | 0.855 | .393 |
| BG (mmol/L) | 9.1 ± 2.2 | 6.1 ± 1.7 | 15.243 | <.001 |
| Vomiting | 30 (30.6%) | 154 (29.7%) | 0.035 | .852 |
| Seizure | 27(27.6%) | 70 (13.5%) | 12.305 | <.001 |
| Spirit change | 22 (22.4%) | 63 (12.1%) | 7.377 | .007 |
| Brain MRI abnormal | 13 (13.3%) | 67 (12.9%) | 0.009 | >.923 |
| EEG abnormal | 22 (22.4%) | 62 (11.9%) | 7.732 | .005 |
| EV71 load (log10 copies/μl) | 3.92 ± 0.69 | 4.01 ± 0.70 | 1.225 | .221 |
Abbreviations: ALT, alanine aminotransferase; AST, aspartate aminotransferase; BG, blood glucose; CK‐MB, cardiac creatine kinase‐MB fraction; CRP, C‐reactive protein; EEG, electroencephalography; MRI, magnetic resonance imaging; WBC, white blood cell count.
Groups compared using χ 2 test.
Groups compared using the t test, values expressed as mean ± SD.
Groups compared using the Wilcoxon rank‐sum test, values expressed as median (25th–75th percentile values).
Figure 2Expression of IRAK4 mRNA in peripheral blood lymphocytes were detected in 32 controls, 31 mild EV71‐infected patients, 39 severe EV71‐infected patients. Values expressed as mean ± SD. (A) Expression of IRAK4 mRNA in mild EV71‐infected patients and severe cases were significantly higher than in controls (p < .001 and p < .001, respectively). The similar difference was found between mild and severe EV71‐infected cases (p < .001). (B) Expression of IRAK4 mRNA in GA + AA genotypes was significantly higher than in GG genotypes patients both in severe and mild EV71 patients (p < .01 and p < .01, respectively). **p < .01, ***p < .001
Figure 3Serum NF‐κB and IL‐6 levels were measured in 32 controls, 31 mild EV71‐infected patients, 39 severe EV71‐infected patients. Values expressed as mean ± SD. (A) NF‐κB serum levels in mild EV71‐infected patients and severe cases were significantly higher than in controls (p < .001 and p < .01, respectively). The similar difference was found between mild and severe EV7‐infected cases (p < .001). (B) IL‐6 serum levels were significantly higher in mild and severe EV71‐infected patients than in controls (p < 0.001 and p < .001, respectively). The similar difference was found between mild and severe EV71‐infected cases (p < .001). (C) The IL‐6/NF‐κB ratios in mild and severe EV71‐infected cases were significantly higher than in controls (p < .001). The similar difference was found between mild and severe EV71‐infected cases (p < .001). (D) There were no significant differences between (GA + AA) and GG genotypes patients both in mild EV71‐infected cases and in severe EV71‐infected cases. (E) The serum levels of IL‐6 in (GA + AA) genotypes in severe EV71 patients were significantly lower than in GG genotypes patients (p < .001), but there was no difference in mild cases. (F) IL‐6/NF‐κB ratios in (GA + AA) genotypes in severe EV71 patients were significantly lower than in GG genotypes patients (p < .05), but there was no difference in mild cases. * p < .05, ***p < .001