Literature DB >> 35476326

In Vitro Reconstitution of Microtubule Dynamics and Severing Imaged by Label-Free Interference-Reflection Microscopy.

Yin-Wei Kuo1,2, Jonathon Howard3.   

Abstract

The dynamic architecture of the microtubule cytoskeleton is crucial for cell division, motility and morphogenesis. The dynamic properties of microtubules-growth, shrinkage, nucleation, and severing-are regulated by an arsenal of microtubule-associated proteins (MAPs). The activities of many of these MAPs have been reconstituted in vitro using microscope assays. As an alternative to fluorescence microscopy, interference-reflection microscopy (IRM) has been introduced as an easy-to-use, wide-field imaging technique that allows label-free visualization of microtubules with high contrast and speed. IRM circumvents several problems associated with fluorescence microscopy including the high concentrations of tubulin required for fluorescent labeling, the potential perturbation of function caused by the fluorophores, and the risks of photodamage. IRM can be implemented on a standard epifluorescence microscope at low cost and can be combined with fluorescence techniques like total-internal-reflection-fluorescence (TIRF) microscopy. Here we describe the experimental procedure to image microtubule dynamics and severing using IRM , providing practical tips and guidelines to resolve possible experimental hurdles.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  IRM; In vitro assay; Label-free imaging; Microtubule dynamics; Severing enzymes; TIRF

Mesh:

Substances:

Year:  2022        PMID: 35476326      PMCID: PMC9131738          DOI: 10.1007/978-1-0716-1983-4_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  46 in total

1.  The importance of lattice defects in katanin-mediated microtubule severing in vitro.

Authors:  Liza J Davis; David J Odde; Steven M Block; Steven P Gross
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

Review 2.  Microtubule dynamics reconstituted in vitro and imaged by single-molecule fluorescence microscopy.

Authors:  Christopher Gell; Volker Bormuth; Gary J Brouhard; Daniel N Cohen; Stefan Diez; Claire T Friel; Jonne Helenius; Bert Nitzsche; Heike Petzold; Jan Ribbe; Erik Schäffer; Jeffrey H Stear; Anastasiya Trushko; Vladimir Varga; Per O Widlund; Marija Zanic; Jonathon Howard
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

3.  Implementation of Interference Reflection Microscopy for Label-free, High-speed Imaging of Microtubules.

Authors:  Mohammed Mahamdeh; Jonathon Howard
Journal:  J Vis Exp       Date:  2019-08-08       Impact factor: 1.355

Review 4.  Microtubule nucleation: beyond the template.

Authors:  Johanna Roostalu; Thomas Surrey
Journal:  Nat Rev Mol Cell Biol       Date:  2017-08-23       Impact factor: 94.444

Review 5.  Microtubule dynamics: an interplay of biochemistry and mechanics.

Authors:  Gary J Brouhard; Luke M Rice
Journal:  Nat Rev Mol Cell Biol       Date:  2018-07       Impact factor: 94.444

6.  Subunit Interactions and cooperativity in the microtubule-severing AAA ATPase spastin.

Authors:  Thomas Eckert; Susanne Link; Doan Tuong-Van Le; Jean-Philippe Sobczak; Anja Gieseke; Klaus Richter; Günther Woehlke
Journal:  J Biol Chem       Date:  2012-05-27       Impact factor: 5.157

Review 7.  Control of microtubule organization and dynamics: two ends in the limelight.

Authors:  Anna Akhmanova; Michel O Steinmetz
Journal:  Nat Rev Mol Cell Biol       Date:  2015-11-12       Impact factor: 94.444

8.  GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.

Authors:  Rie Ayukawa; Seigo Iwata; Hiroshi Imai; Shinji Kamimura; Masahito Hayashi; Kien Xuan Ngo; Itsushi Minoura; Seiichi Uchimura; Tsukasa Makino; Mikako Shirouzu; Hideki Shigematsu; Ken Sekimoto; Benoît Gigant; Etsuko Muto
Journal:  J Cell Biol       Date:  2021-04-05       Impact factor: 10.539

9.  Structure and Dynamics of Single-isoform Recombinant Neuronal Human Tubulin.

Authors:  Annapurna Vemu; Joseph Atherton; Jeffrey O Spector; Agnieszka Szyk; Carolyn A Moores; Antonina Roll-Mecak
Journal:  J Biol Chem       Date:  2016-04-25       Impact factor: 5.157

Review 10.  Cutting, Amplifying, and Aligning Microtubules with Severing Enzymes.

Authors:  Yin-Wei Kuo; Jonathon Howard
Journal:  Trends Cell Biol       Date:  2020-11-09       Impact factor: 21.167

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  2 in total

1.  The force required to remove tubulin from the microtubule lattice by pulling on its α-tubulin C-terminal tail.

Authors:  Yin-Wei Kuo; Mohammed Mahamdeh; Yazgan Tuna; Jonathon Howard
Journal:  Nat Commun       Date:  2022-06-25       Impact factor: 17.694

2.  Counting fluorescently labeled proteins in tissues in the spinning-disk microscope using single-molecule calibrations.

Authors:  Maijia Liao; Yin-Wei Kuo; Jonathon Howard
Journal:  Mol Biol Cell       Date:  2022-03-24       Impact factor: 3.612

  2 in total

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