Literature DB >> 33544140

GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.

Rie Ayukawa1, Seigo Iwata1, Hiroshi Imai2, Shinji Kamimura2, Masahito Hayashi1, Kien Xuan Ngo1, Itsushi Minoura1, Seiichi Uchimura1, Tsukasa Makino1, Mikako Shirouzu3, Hideki Shigematsu3, Ken Sekimoto4,5, Benoît Gigant6, Etsuko Muto1.   

Abstract

Nucleation of microtubules (MTs) is essential for cellular activities, but its mechanism is unknown because of the difficulty involved in capturing rare stochastic events in the early stage of polymerization. Here, combining rapid flush negative stain electron microscopy (EM) and kinetic analysis, we demonstrate that the formation of straight oligomers of critical size is essential for nucleation. Both GDP and GTP tubulin form single-stranded oligomers with a broad range of curvatures, but upon nucleation, the curvature distribution of GTP oligomers is shifted to produce a minor population of straight oligomers. With tubulin having the Y222F mutation in the β subunit, the proportion of straight oligomers increases and nucleation accelerates. Our results support a model in which GTP binding generates a minor population of straight oligomers compatible with lateral association and further growth to MTs. This study suggests that cellular factors involved in nucleation promote it via stabilization of straight oligomers.
© 2021 Ayukawa et al.

Entities:  

Year:  2021        PMID: 33544140      PMCID: PMC7871348          DOI: 10.1083/jcb.202007033

Source DB:  PubMed          Journal:  J Cell Biol        ISSN: 0021-9525            Impact factor:   10.539


  66 in total

Review 1.  Microtubule dynamics reconstituted in vitro and imaged by single-molecule fluorescence microscopy.

Authors:  Christopher Gell; Volker Bormuth; Gary J Brouhard; Daniel N Cohen; Stefan Diez; Claire T Friel; Jonne Helenius; Bert Nitzsche; Heike Petzold; Jan Ribbe; Erik Schäffer; Jeffrey H Stear; Anastasiya Trushko; Vladimir Varga; Per O Widlund; Marija Zanic; Jonathon Howard
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

Review 2.  Fluorescence microscopy assays on chemically functionalized surfaces for quantitative imaging of microtubule, motor, and +TIP dynamics.

Authors:  Peter Bieling; Ivo A Telley; Christian Hentrich; Jacob Piehler; Thomas Surrey
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

3.  A reassessment of the factors affecting microtubule assembly and disassembly in vitro.

Authors:  N Caudron; O Valiron; Y Usson; P Valiron; D Job
Journal:  J Mol Biol       Date:  2000-03-17       Impact factor: 5.469

4.  Overexpression, purification, and functional analysis of recombinant human tubulin dimer.

Authors:  Itsushi Minoura; You Hachikubo; Yoshihiko Yamakita; Hiroko Takazaki; Rie Ayukawa; Seiichi Uchimura; Etsuko Muto
Journal:  FEBS Lett       Date:  2013-09-08       Impact factor: 4.124

5.  Tubulin oligomers and microtubule assembly studied by time-resolved X-ray scattering: separation of prenucleation and nucleation events.

Authors:  U Spann; W Renner; E M Mandelkow; J Bordas; E Mandelkow
Journal:  Biochemistry       Date:  1987-02-24       Impact factor: 3.162

6.  Separating the effects of nucleotide and EB binding on microtubule structure.

Authors:  Rui Zhang; Benjamin LaFrance; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

7.  The speed of GTP hydrolysis determines GTP cap size and controls microtubule stability.

Authors:  Claire Thomas; Nicholas Ian Cade; Johanna Roostalu; Simone Kunzelmann; Ian A Taylor; Thomas Surrey
Journal:  Elife       Date:  2020-02-13       Impact factor: 8.140

8.  Tubulin dimers oligomerize before their incorporation into microtubules.

Authors:  Julien Mozziconacci; Linda Sandblad; Malte Wachsmuth; Damian Brunner; Eric Karsenti
Journal:  PLoS One       Date:  2008-11-27       Impact factor: 3.240

9.  Complementary activities of TPX2 and chTOG constitute an efficient importin-regulated microtubule nucleation module.

Authors:  Johanna Roostalu; Nicholas I Cade; Thomas Surrey
Journal:  Nat Cell Biol       Date:  2015-09-28       Impact factor: 28.824

10.  The role of tubulin-tubulin lattice contacts in the mechanism of microtubule dynamic instability.

Authors:  Szymon W Manka; Carolyn A Moores
Journal:  Nat Struct Mol Biol       Date:  2018-07-02       Impact factor: 15.369

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  10 in total

Review 1.  Regulation of microtubule dynamics, mechanics and function through the growing tip.

Authors:  Nikita B Gudimchuk; J Richard McIntosh
Journal:  Nat Rev Mol Cell Biol       Date:  2021-08-18       Impact factor: 94.444

Review 2.  Microtubules in Microorganisms: How Tubulin Isotypes Contribute to Diverse Cytoskeletal Functions.

Authors:  Abesh Bera; Mohan L Gupta
Journal:  Front Cell Dev Biol       Date:  2022-07-05

3.  Structural convergence for tubulin binding of CPAP and vinca domain microtubule inhibitors.

Authors:  Valérie Campanacci; Agathe Urvoas; Liza Ammar Khodja; Magali Aumont-Nicaise; Magali Noiray; Sylvie Lachkar; Patrick A Curmi; Philippe Minard; Benoît Gigant
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-04       Impact factor: 12.779

4.  In Vitro Reconstitution of Microtubule Dynamics and Severing Imaged by Label-Free Interference-Reflection Microscopy.

Authors:  Yin-Wei Kuo; Jonathon Howard
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Reconstituting Microtubules: A Decades-Long Effort From Building Block Identification to the Generation of Recombinant α/β-Tubulin.

Authors:  Shih-Chieh Ti
Journal:  Front Cell Dev Biol       Date:  2022-04-28

6.  Straightening up is required to nucleate new microtubules.

Authors:  Melissa K Gardner
Journal:  J Cell Biol       Date:  2021-04-05       Impact factor: 10.539

7.  Tubulin binding potentially clears up Bortezomib and Carfilzomib differential neurotoxic effect.

Authors:  A Malacrida; S Semperboni; A Di Domizio; A Palmioli; L Broggi; C Airoldi; C Meregalli; G Cavaletti; G Nicolini
Journal:  Sci Rep       Date:  2021-05-18       Impact factor: 4.379

8.  Microtubule-associated proteins promote microtubule generation in the absence of γ-tubulin in human colon cancer cells.

Authors:  Kenta Tsuchiya; Gohta Goshima
Journal:  J Cell Biol       Date:  2021-11-15       Impact factor: 8.077

9.  Kinesin-14 motors participate in a force balance at microtubule plus-ends to regulate dynamic instability.

Authors:  Allison Ogren; Sneha Parmar; Soumya Mukherjee; Samuel J Gonzalez; Melissa Plooster; Mark McClellan; Anirudh G Mannava; Elliott Davidson; Trisha N Davis; Melissa K Gardner
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-22       Impact factor: 12.779

10.  Bending-torsional elasticity and energetics of the plus-end microtubule tip.

Authors:  Maxim Igaev; Helmut Grubmüller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-18       Impact factor: 11.205

  10 in total

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