| Literature DB >> 35475576 |
Shahab Hassan1, Kenneth White1, Cassandra Terry1.
Abstract
There are over 40 identified human disorders that involve certain proteins folding incorrectly, accumulating in the body causing damage to cells and organs and causing disease. Type 2 Diabetes Mellitus (T2DM) is one of these protein misfolding disorders (PMDs) and involves human islet amyloid polypeptide (hIAPP) misfolding and accumulating in parts of the body, primarily in the pancreas, causing damage to islet cells and affecting glucose regulation. In this review, we have summarised our current understanding of what causes hIAPP to misfold, what conformations are found in different parts of the body with a particular focus on what is known about the structure of hIAPP and how this links to T2DM. Understanding the molecular basis behind these misfolding events is essential for understanding the role of hIAPP to develop better therapeutics since type 2 diabetes currently affects over 4.9 million people in the United Kingdom alone and is predicted to increase as our population ages.Entities:
Keywords: amyloid; diabetes; hIAPP
Mesh:
Substances:
Year: 2022 PMID: 35475576 PMCID: PMC9118370 DOI: 10.1042/BSR20211297
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.976
Studies that have observed accumulation of misfolded hIAPP in T2DM patients in comparison to healthy controls
| Tissue/organ | Methods used | Observations | Reference |
|---|---|---|---|
| Blood | Western blotting and ELISA | Monomers in plasma, white blood cells and red blood cells. hIAPP-coated RBCs show reduced functional haemoglobin and have lower deformability | [ |
| Blood | Western blotting, TEM, CD | Soluble oligomers in the form of homooligomers (trimers, hexamers, dodecamers) and heterooligomers varying in size (1–400 nm) from sera of children with T1DM and T2DM and obese children. Fibrils 55–252 nm in length present in T2DM and obese patients | [ |
| Blood | Immunochemistry with anti-IAPP antibodies, Congo Red staining | hIAPP plaques, amyloid fibrils found in the blood vessel walls and also perivascular spaces | [ |
| Brain | Immunohistochemistry with anti-IAPP antibodies, Congo Red staining, Western blotting, ELISA, qRT-PCR | hIAPP oligomers (trimers 12 kDa, tetramers 16 kDa, and pentamers 20 kDa) and hIAPP plaques > 20 µm in diameter identified in the temporal lobe grey matter. Tetramers abundant in brain homogenates. Tissues showed increased interstitial space, vacuolation, spongiform change, and capillaries bent at hIAPP accumulation sites. hIAPP mRNA in the brain is ∼104 lower than in the pancreas | [ |
| Heart | Immunohistochemistry and Western blotting | Oligomers (>32 kDa), fibrillar tangles, plaques, found in diabetic and obese patients’ hearts. Small oligomers found in healthy hearts from obese patients | [ |
| Kidneys | Immunohistochemistry, Immunogold staining TEM | hIAPP deposits composed of straight non-branching fibrils 12–16 nm in diameter observed in Kimmelstiel–Wilson nodules, Bowman’s capsule in patients with diabetic nephropathy | [ |
| Pancreas | Immunohistochemistry with anti-IAPP antibodies, qRT-PCR | Fibrillar deposits in pancreatic islets | [ |
| Pancreas | Congo Red staining | Fibrillar deposits in pancreatic islets adjacent to the islet cells | [ |
| Pancreas | Peroxidase-antiperoxidase staining, Immunohistochemistry, Congo Red staining | Amyloid deposits plus amorphous deposits stained with Congo Red in Islets of Langerhans. Amyloid did not stain with anti-insulin antiserum | [ |
| Pancreas | Congo Red staining | Amyloid fibrils found mostly between capillaries and epithelial islet cells. Amyloid likely originated from β-cells: cells show amyloid-filled invagination and orientation of hIAPP fibrils were seen perpendicular to cell surface. Enlarged macrophages with amyloid deposits. β-cells degraded in the islets | [ |
| Pancreas | Microscopy staining with Haematoxylin, Eosin, Picric acid stain | Deposition of ‘hyaline material’ in pancreatic parenchymal cells and immediately outside the walls of the capillaries | [ |
Summarised here are the location of the misfolded hIAPP, the morphology of the misfolded forms, and experimental techniques used to analyse the misfolded aggregates from tissues acquired post mortem. Abbreviations: CD, circular dichroism; ELISA, enzyme-linked immunosorbent assay; qRT-PCR, quantitative real-time polymerase chain reaction; TEM, transmission electron microscopy.
Figure 1Diagram summarising the location of hIAPP that has been identified in different parts of the body in T2DM patients
The conformations of hIAPP that have been identified in studies to date have been highlighted. Also highlighted are factors thought to contribute to this protein deposition in these different parts of the body summarising what has been suggested in the literature.
Summary of all hIAPP protein structures solved to date including sample details, a brief description of the structures obtained, and the associated references in reverse chronological order by article publication date
| IAPP sample preparation | Structural methods | Structural observations | PDB code | Reference |
|---|---|---|---|---|
| Synthetic hIAPP peptides seeded with | Cryo-EM | Polymorph 1. Twisted, heterotypic fibrils, composed of two non-identical protofilaments with 589 Å repeating pitch. Cross-β scaffold with β-strands stacked with 4.8-Å spacing |
| [ |
| Synthetic hIAPP peptides seeded with | Cryo-EM | Polymorph 2. Twisted fibrils composed of two identical protofilaments with 547 Å repeating pitch. Cross-β scaffold with β-strands stacked with 4.8-Å spacing. |
| [ |
| Synthetic hIAPP peptides seeded with | Cryo-EM | Polymorph 3. Twisted fibrils composed of two identical protofilaments with 259 Å repeating pitch. Cross-β scaffold with β-strands stacked with 4.8-Å spacing. Two S-shaped, intertwined protofilaments same as 6Y1A. Two identical core folds for chain A and B from F15-S28. Tyr37 forms a hydrogen bond promoting amyloidosis. 4 Å resolution |
| [ |
| Synthetic hIAPP peptides seeded with | Cryo-EM | Polymorph 4. Twisted, heterotypic fibrils, composed of two non-identical protofilaments 589 Å repeating pitch. Cross-β scaffold with β-strands stacked with 4.8-Å spacing. Two different core folds: Chain A core fold F15-S28 and Chain B core fold S20-G33. Tyr37 forms a hydrogen bond promoting amyloidosis. 4.1 Å resolution |
| [ |
| Human, IAPP analogue (AM833 / Cagrilintide) mutations N14E, V17R, A25P, S28P, S29P, Y37P analogue fusion with MBP | X-ray diffraction | Cys7–Cys6 disulphide bond, α-helix from 5 to 18, and S34-P37 (SNTP) disordered at C-terminal end. 2.89 Å resolution |
| [ |
| Human, full length expressed in | Cryo-EM | Fibrils composed of two symmetrically related protofilaments with ordered residues 14–37. |
| [ |
| Human pro-IAPP in DPC micelles at pH 4.5 | Solution NMR | Open conformer with average angle between α1 and α2 ranged from 162 to 170°. ProIAPP is a dynamic molecule with four α-helices. The first two within the mature IAPP sequence, the second two form part of the C-terminal prohormone segment (Cpro) |
| [ |
| Human pro-IAPP in DPC micelles at pH 4.5 | Solution NMR | Bent conformer with average angle between α1 and α2 ranged from 119 to 127°. ProIAPP is a dynamic molecule with four α-helices. The first two within the mature IAPP sequence, the second two form part of the C-terminal prohormone segment (Cpro) |
| [ |
| Human, wildtype, residues 14–37 | Cryo-EM | WT has fibrils with an ordered core composed of two-protofilament amyloid structures composed of two S-shaped subunits, with 25 nm crossover lengths. Left hand helical twist. 3.6 Å resolution |
| [ |
| Human, S20G early-onset variant with amidated C-terminus | Cryo-EM | S20G fibrils consist of two types. ‘2PF’ has two protofilaments in the fibril. Approximately 76% of fibril segments with a 50-nm repeat. Left hand helical twist. 4.0 Å resolution |
| [ |
| Human, S20G early-onset variant with amidated C-terminus | Cryo-EM | S20G fibrils consist of two types. ‘3PF’ has three protofilaments in the fibril. Approximately 24% of fibril segments have a 50-nm repeat. Left hand helical twist. 3.9 Å resolution |
| [ |
| Human, full length synthetic hIAPP pH 6, amidated with Cys2–Cys7 disulphide bond | Cryo-EM | Three amyloid fibril polymorphs formed |
| [ |
| Human IAPP 1–37 polypeptide | Cryo-electron tomography, Negative stain and cryo-EM | Fibrils 12 nm in width composed of two protofilaments (6 nm in width) intertwine to form fibrils several micrometres long | N/A | [ |
| Human IAPP segment 15-FLVHSSNNFGA-25 m wildtype | Electron crystallography and Micro ED | Fibrils composed of tightly mated curved pairs of parallel in-register β-sheets, cytotoxic. 1.4 Å resolution |
| [ |
| Human IAPP 19-SGNNFGAILSS-29 with early-onset S20G mutation | Electron crystallography/Micro ED | Fibrils formed of pairs of parallel in-register curved β-sheets. Shares features with full-length hIAPP fibrils, also toxic. 1.9 Å resolution |
| [ |
| 11–17 hIAPP peptide (RLANFLV) | X-ray crystallography | Tetramer composed of 4 β-sheets that pack to form a tetramer. Consist of hydrogen-bonded dimers (composed of antiparallel β-sheets) that are held together by hydrophobic interactions. 1.8 Å resolution |
| [ |
| Human, full length, oxidised and amidated hIAPP | Solution NMR | Monomeric hIAPP in water. N-terminus of oxidised peptide forms an α-helical structure lacking in the reduced state. Disulphide bridge in oxidised hIAPP stabilises an α-helical structure at the N-terminus preventing the peptide from aggregating |
| [ |
| Human IAPP, residues 10–30, in complex with an aggregation inhibitor HI18 | Solution NMR | Monomeric IAPP adopts a β-hairpin conformation upon binding to H18. |
| [ |
| Human IAPP peptide residues 13–18 | X-ray crystallography | IAPP segments from fibril core. 13-ANFLVH-18, form parallel, in-register β-sheets. 1.61 Å resolution |
| [ |
| Human IAPP peptide residues 16–21 | X-ray crystallography | Hexameric segment 16-LVHSSN-21, forms a staggered in-register steric zipper. 1.66 Å resolution |
| [ |
| Human IAPP peptide residues 23–29 | X-ray crystallography | 23-FGAILSS-29, steric zipper with β-strands arranged anti-parallel in a β-sheet and the two mating sheets running parallel to each other. 1.79 Å resolution |
| [ |
| Human IAPP peptide residues 22–28 | X-ray crystallography | 22-NFGAILS-28 forms an out-of-register steric zipper. 1.24 Å resolution |
| [ |
| Human full-length synthetic hIAPP peptide | EPR, TEM and computer modelling | Fibrils composed of two β-strands, forming two opposing β-sheets that wrap around one another, with hydrophobic fibril ends. Fibrils have a left-handed helical twist and are composed of staggered hIAPP monomers | N/A | [ |
| Human full length hIAPP, with Cys2–Cys7 disulphide bond and amidated at C-terminus, pH 7.3 in SDS micelles | Solution NMR | Amidated, monomeric hIAPP in membrane environment. Ordered C-terminus, kinked helix motif, with residues 7–17 and 21–28 in a helical conformation. Short 310 helix (residues Gly33 to Asn35) |
| [ |
| Monomeric human hIAPP bound to cysteine free insulin-degrading enzyme (E111Q mutant) | X-ray diffraction | Monomeric hIAPP is embedded into several hydrophobic pockets of IDE, between residues 15 and 16 is one of the major cleavage sites. 2.9 Å resolution |
| [ |
| Human, residues 20–29 | Solid-state NMR | Antiparallel hetero zipper amyloid fibrils. |
| [ |
| Human, full-length monomeric IAPP, non-amidated, expressed in E. coli, bound to SDS micelles, pH 4.3 | Solution NMR | Residues 1–4 form a hairpin loop by the single disulphide bond. Residues 5–28 form the α-helix core. Last nine residues are unfolded |
| [ |
| Human, IAPP NFLVHS segment | X-ray diffraction | Steric zipper, amyloid-like fibrils and microcrystals. 1.85 Å resolution |
| [ |
| Human IAPP AILSST segment | X-ray diffraction | Steric zipper, amyloid-like fibrils and microcrystals. 1.4Å resolution |
| [ |
| Human IAPP HSSNNF segment | X-ray diffraction | Steric zipper, amyloid-like fibrils and microcrystals. 1.5Å resolution |
| [ |
| Human, IAPP NVGSNTY form 1, hydrated crystal form | X-ray diffraction | Steric zipper, hydrated crystal form, protein fibril. 1.5Å resolution |
| [ |
| Human IAPP, NVGSNTY form 2, heptapeptide segment | X-ray diffraction | Dehydrated crystal form, classified as protein fibril. 1.6Å resolution |
| [ |
| Human IAPP, NFLVHSS segment | X-ray diffraction | Anti-parallel β-sheet with sulphate ion-bound. 1.84 Å resolution. |
| [ |
| Human SSTNVG, alternate polymorph, form 2 | X-ray diffraction | Steric zipper, amyloid forming peptide, β-sheet packed face to face, 1.61 Å resolution |
| [ |
| Full-length human IAPP expressed in | X-ray diffraction | Adopts an α-helical structure at residues 8-18 and 22–27. Molecules of IAPP dimerise, four chains, 1.86 Å resolution |
| [ |
| Human expressed in | X-ray diffraction | Adopts an α-helical structure. 1.75 Å resolution |
| [ |
| Human IAPP NNFGAIL (21-27) peptide | X-ray diffraction | Forms amyloid-like fibrils. 1.8 Å resolution |
| [ |
| Human IAPP SSTNVG | X-ray diffraction | Form amyloid-like fibrils with cross-β spine. 1.66 Å resolution |
| [ |
| Residues 18–27 of hIAPP | Solid-state NMR, TEM and AFM | Forms a striated ribbon structure (protofilament) that contains four layers of parallel ß-sheets formed by two symmetric layers of IAPP molecules | N/A | [ |
| An F15L/F23L/Y37L triple mutant (IAPP-3XL) absent of aromatic residues | AFM | Triple leucine mutant readily forms fibrils but at a lower rate compared with WT. Both have left-handed helix, both twisted ribbon morphology that's more pronounced in WT | N/A | [ |
| Human, full-length peptide in complex with insulin-degrading enzyme | X-ray diffraction | Each IDE monomer comprises four homologous αβ roll domains. Forms β-sheets with IDE strands B12 and B6. 2.6 Å resolution |
| [ |
| Human peptide (20–29) in membrane-mimicking environment | Solution NMR | hIAPP forms a distorted type I β-turn when it interacts with negatively charged micelles |
| [ |
Data are taken from open-access, peer-reviewed publications and from data deposited in the Protein Data Bank (www.wwpdb.org) website. Abbreviations: DPC, dodecyl phosphocholine; EM, electron microscopy; EPR, electron paramagnetic resonance; Micro ED, micro electron diffraction; NMR, nuclear magnetic resonance; SDS, sodium dodecyl sulphate.
Figure 2Cartoon diagram that highlights in the form of a simplified flow chart, the different protein conformations hIAPP adopts and how they relate to T2DM
Outlined are the different factors thought to contribute at different stages of the misfolding process and key molecular features related to the different conformations.
Figure 3The identification of important residues linked to amyloidosis highlighted on solved 3D structures of hIAPP
The colours highlight single residue mutations that abolish (purple), or accelerate (yellow) amyloid formation, or both (orange) and can be seen in the amino acid sequence within each figure. (A) Structure of recombinant hIAPP with an amidated C-terminal and oxidised cysteines, solved by solution NMR (PDB code = 5MGQ). (B) Structure of synthetic wildtype hIAPP peptide that is amidated at the C-terminal and aggregated in vitro to form fibrils and solved by cryo-EM (PDB code = 6Y1A). (A,B) are created using Pymol (http://www.pymol.org/pymol) and protein structures 5MGQ and 6Y1A were obtained from the Protein Data Bank (https://www.rcsb.org/).