Literature DB >> 35460380

Species Composition and Diversity Dynamics of Actinomycetes in Arid and Semi-arid Salt Basins of Rajasthan.

Khushbu Parihar1, Praveen Gehlot2, Manish Mathur3, Alkesh Tak1, Rakesh Pathak3, Sunil K Singh3.   

Abstract

Species composition and diversity dynamics of the actinomycetes was studied in five salt basins of arid and semi-arid areas of Rajasthan, India. A novel approach integrating molecular (16S rRNA gene) and diversity indices was applied to reveal species composition and diversity dynamics. Fifty-three actinomycetes isolates were isolated from five arid and semi-arid salt basins. Molecular characterization resulted in the identification of actinomycetes species belonging to three genera namely, Streptomyces, Nocardiopsis, and Actinoalloteichus. The diversity study among actinomycetes species validates their universal occurrence in arid and semi-arid regions of Rajasthan. The species N. dassonvillei subsp. albirubida was omnipresent in all the five salt basins but its relative manifestation was not static across habitats. The study revealed that three species N. chromatogenes, S. durbertensis, and S. mangrovicola are being reported for the first time from India. The maximum species of actinomycetes were recorded from Pachpadra (14) and the minimum from Didwana area (6). This study not only documents the hitherto wealth of actinomycetes species in arid and semi-arid salt basins of Rajasthan but also reveals the composition and diversity dynamics of actinomycetes.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

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Year:  2022        PMID: 35460380     DOI: 10.1007/s00284-022-02851-3

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  11 in total

1.  Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.

Authors:  H Heuer; M Krsek; P Baker; K Smalla; E M Wellington
Journal:  Appl Environ Microbiol       Date:  1997-08       Impact factor: 4.792

2.  Extremely rapid extraction of DNA from bacteria and yeasts.

Authors:  Hai-Rong Cheng; Ning Jiang
Journal:  Biotechnol Lett       Date:  2006-01       Impact factor: 2.461

3.  Diversity of planktonic foraminifera in deep-sea sediments.

Authors:  W H Berger; F L Parker
Journal:  Science       Date:  1970-06-12       Impact factor: 47.728

4.  A meta-analysis of the publicly available bacterial and archaeal sequence diversity in saline soils.

Authors:  Bin Ma; Jun Gong
Journal:  World J Microbiol Biotechnol       Date:  2013-06-12       Impact factor: 3.312

5.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

6.  Occurrence and characterization of hitherto unknown Streptomyces species in semi-arid soils.

Authors:  Surendra Kumar; E Priya; Dilip Singh Solanki; Ruchika Sharma; Praveen Gehlot; Rakesh Pathak; S K Singh
Journal:  J Environ Biol       Date:  2016-09

7.  Microbial Diversity of the Hypersaline Sidi Ameur and Himalatt Salt Lakes of the Algerian Sahara.

Authors:  Saad Boutaiba; Hocine Hacene; Kelly A Bidle; Julie A Maupin-Furlow
Journal:  J Arid Environ       Date:  2011-10-01       Impact factor: 2.211

8.  Microbial community structure and diversity within hypersaline Keke Salt Lake environments.

Authors:  Rui Han; Xin Zhang; Jing Liu; Qifu Long; Laisheng Chen; Deli Liu; Derui Zhu
Journal:  Can J Microbiol       Date:  2017-08-29       Impact factor: 2.419

9.  Occurrence of culturable soil fungi in a tropical moist deciduous forest Similipal Biosphere Reserve, Odisha, India.

Authors:  Santanu K Jena; Kumanand Tayung; Chandi C Rath; Debraj Parida
Journal:  Braz J Microbiol       Date:  2015-03-01       Impact factor: 2.476

10.  Genome sequencing analysis of Streptomyces coelicolor mutants that overcome the phosphate-depending vancomycin lethal effect.

Authors:  Fernando Santos-Beneit
Journal:  BMC Genomics       Date:  2018-06-14       Impact factor: 3.969

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