| Literature DB >> 35456391 |
Chee-Ming Lee1,2, Yi-Sun Yang3,4, Edy Kornelius3,4, Chien-Ning Huang1,3,4, Min-Yen Hsu3,5, Chia-Yi Lee6, Shu-Yen Peng1,2, Shun-Fa Yang1,7.
Abstract
The aim of this work was to appraise the potential associations of single nucleotide polymorphisms (SNPs) of long non-coding RNA growth arrest-specific 5 (GAS5) with diabetic retinopathy (DR) in a diabetes mellitus (DM) population. Two loci of the GAS5 SNPs (rs55829688 and rs145204276) were genotyped via TaqMan allelic discrimination in 449 non-DR patients and 273 DR subjects. The SNP rs145204276 Del/Del showed a significantly higher distribution in the DR group compared to the non-DR group (AOR: 2.487, 95% CI: 1.424-4.344, p = 0.001). During subgroup analyses, the non-proliferative diabetic retinopathy (NPDR) subgroup demonstrated a significantly higher ratio of the SNP rs145204276 Del/Del (AOR: 2.917, 95% CI: 1.574-5.406, p = 0.001) and Ins/Del + Del/Del (AOR: 1.242, 95% CI: 1.016-1.519, p = 0.034) compared to the non-DR population, while the proliferative diabetic retinopathy (PDR) subgroup did not reveal significant differences in either SNP rs145204276 or rs55829688 distributions compared to the non-DR group. Furthermore, patients with a GAS5 SNP rs145204276 Del/Del showed a significantly shorter DM duration than the wild type (Ins/Ins) (p = 0.021). In conclusion, our findings demonstrate that the GAS5 SNP rs145204276 Del/Del variant is associated with an increased susceptibility to DR in DM patients, particularly in those patients with NPDR.Entities:
Keywords: diabetes mellitus; diabetic retinopathy; duration; growth arrest-specific 5; polymorphism
Mesh:
Substances:
Year: 2022 PMID: 35456391 PMCID: PMC9029547 DOI: 10.3390/genes13040584
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Clinical and laboratory characteristics of patients with and without diabetic retinopathy.
| Variable | Non-DR Group (N = 449) | DR Group (N = 273) | |
|---|---|---|---|
| Age (years) | 60.20 ± 11.24 | 62.57 ± 10.77 | 0.005 * |
| Male gender [ | 237 (52.8%) | 151 (55.3%) | 0.509 |
| Duration of DM (years) | 9.43 ± 7.04 | 12.02 ± 7.99 | <0.001 * |
| HbA1c [% (mmol/mol)] | 6.96 ± 0.99 | 7.59 ± 1.42 | <0.001 * |
| Insulin treatment [ | 105 (23.4%) | 127 (46.5%) | <0.001 * |
| Body mass index [kg/m2] | 26.16 ± 4.32 | 25.98 ± 4.31 | 0.588 |
| Systolic blood pressure [mmHg] | 135.34 ± 15.30 | 137.29 ± 17.33 | 0.117 |
| Diastolic blood pressure [mm Hg] | 76.36 ± 11.28 | 75.75 ± 11.48 | 0.483 |
| Serum creatinine [mg/dL] | 0.89 ± 0.35 | 1.55 ± 1.85 | <0.001 * |
| Glomerular filtration rate [mL/min] | 78.41 ± 27.76 | 62.91 ± 34.30 | <0.001 * |
| Total cholesterol [mmol/L] | 160.66 ± 43.15 | 165.456 ± 47.85 | 0.173 |
| HDL cholesterol [μmol/L] | 46.30 ± 12.66 | 43.77 ± 13.52 | 0.013 * |
| LDL cholesterol [μmol/L] | 86.70 ± 28.31 | 86.71 ± 32.88 | 0.997 |
| Triglycerides, [μmol/L] | 140.62 ± 165.76 | 155.90 ± 116.83 | 0.193 |
N: number; DR: diabetic retinopathy; DM: diabetes mellitus; HbA1c: glycated hemoglobin. * denotes a significant difference between the two groups
The adjusted odds ratio and 95% confidence intervals of diabetic retinopathy associated with GAS5 genotypic frequencies.
| Variable | Non-DR Group (N = 449) | DR Group (N = 273) | AOR (95% CI) | |
|---|---|---|---|---|
|
| ||||
| Ins/Ins | 206 (45.9%) | 107 (39.2%) | 1.000 (reference) | |
| Ins/Del | 204 (45.4%) | 129 (47.3%) | 1.228 (0.850–1.773) | 0.274 |
| Del/Del | 39 (8.7%) | 37 (13.6%) | 2.487 (1.424–4.344) | 0.001 * |
| Ins/Del + Del/Del | 243 (54.1%) | 166 (60.8%) | 1.189 (0.999–1.415) | 0.051 |
|
| ||||
| TT | 212 (47.2%) | 125 (45.8%) | 1.000 (reference) | |
| TC | 186 (41.4%) | 119 (43.6%) | 0.994 (0.694–1.424) | 0.274 |
| CC | 51 (11.4%) | 29 (10.6%) | 0.789 (0.439–1.416) | 0.427 |
| TC + CC | 237 (52.8%) | 148 (54.2%) | 0.974 (0.822–1.155) | 0.762 |
N: number; DR: diabetic retinopathy; AOR: adjusted odds ratio, estimated by multiple logistic regression models after controlling for age, the duration of DM, HbA1c, insulin treatment, serum creatinine levels, glomerular filtration rate, and HDL cholesterol levels. CI: confidence intervals. * denotes a significant difference in the distribution of polymorphism between the two groups.
The adjusted odds ratio and 95% confidence intervals of non-proliferative diabetic retinopathy associated with GAS5 genotypic frequencies.
| Variable | Non-DR Group (N = 449) | NPDR Subgroup (N = 163) | AOR (95% CI) | |
|---|---|---|---|---|
|
| ||||
| Ins/Ins | 206 (45.9%) | 57 (35.0%) | 1.000 (reference) | |
| Ins/Del | 204 (45.4%) | 80 (49.1%) | 1.350 (0.852–2.000) | 0.220 |
| Del/Del | 39 (8.7%) | 26 (16.0%) | 2.917 (1.574–5.406) | 0.001 * |
| Ins/Del + Del/Del | 243 (54.1%) | 106 (65.0%) | 1.242 (1.016–1.519) | 0.034 * |
|
| ||||
| TT | 212 (47.2%) | 70 (42.9%) | 1.000 (reference) | |
| TC | 186 (41.4%) | 75 (46.0%) | 1.040 (0.688–1.572) | 0.853 |
| CC | 51 (11.4%) | 18 (11.1%) | 0.997 (0.525–1.891) | 0.992 |
| TC + CC | 237 (52.8%) | 93 (57.1%) | 1.015 (0.835–1.234) | 0.880 |
N: number; DR: diabetic retinopathy; NPDR: non-proliferative diabetic retinopathy. AOR: adjusted odds ratio, estimated by multiple logistic regression models after controlling for age, the duration of DM, HbA1c, insulin treatment, serum creatinine levels, glomerular filtration rate, and HDL cholesterol levels. CI: confidence intervals. * denotes a significant difference in the distribution of polymorphism between the two groups.
The adjusted odds ratio and 95% confidence intervals of proliferative diabetic retinopathy associated with GAS5 genotypic frequencies.
| Variable | Non-DR Group (N = 449) | PDR Subgroup (N = 110) | AOR (95% CI) | |
|---|---|---|---|---|
|
| ||||
| Ins/Ins | 206 (45.9%) | 50 (45.5%) | 1.000 (reference) | |
| Ins/Del | 204 (45.4%) | 49 (44.5%) | 1.086 (0.635–1.859) | 0.763 |
| Del/Del | 39 (8.7%) | 11 (10.0%) | 1.458 (0.617–3.448) | 0.391 |
| Ins/Del + Del/Del | 243 (54.1%) | 60 (54.5%) | 1.070 (0.829–1.382) | 0.603 |
|
| ||||
| TT | 212 (47.2%) | 55 (50.0%) | 1.000 (reference) | |
| TC | 186 (41.4%) | 44 (40.0%) | 0.940 (0.551–1.605) | 0.822 |
| CC | 51 (11.4%) | 11 (10.0%) | 0.502 (0.184–1.371) | 0.179 |
| TC + CC | 237 (52.8%) | 55 (50.0%) | 0.916 (0.710–1.181) | 0.497 |
N: number; DR: diabetic retinopathy; PDR: proliferative diabetic retinopathy. AOR: adjusted odds ratio, estimated by multiple logistic regression models after controlling for age, the duration of DM, HbA1c, insulin treatment, serum creatinine levels, glomerular filtration rate, and HDL cholesterol levels. CI: confidence intervals.
Clinical characteristics of diabetic retinopathy patients according to GAS5 rs145204276 genotypes.
| Variable | |||
|---|---|---|---|
| Ins/Ins (N = 107) | Ins/Del (N = 129) | Del/Del (N = 37) | |
| Duration of DM (years) | 13.51 ± 8.36 | 11.51 ± 8.05 | 9.46 ± 5.64 a,b |
| HbA1c [% (mmol/mol)] | 7.73 ± 1.51 | 7.56 ± 1.34 | 7.30 ± 1.43 |
| Serum creatinine [mg/dL] | 1.75 ± 2.40 | 1.51 ± 1.45 | 1.13 ± 1.06 |
| Glomerular filtration rate [mL/min] | 60.70 ± 33.31 | 62.61 ± 35.98 | 70.08 ± 31.07 |
| Total cholesterol [mmol/L] | 161.02 ± 44.56 | 168.54 ± 50.58 | 167.43 ± 47.70 |
| HDL cholesterol [μmol/L] | 43.82 ± 13.00 | 43.67 ± 13.80 | 43.99 ± 14.34 |
| LDL cholesterol [μmol/L] | 83.70 ± 29.82 | 90.18 ± 35.35 | 83.60 ± 32.21 |
| Triglycerides, [μmol/L] | 147.19 ± 101.52 | 155.57 ± 117.50 | 180.51 ± 149.17 |
GAS5: growth arrest-specific 5; N: number; DM: diabetes mellitus; HbA1c: glycated hemoglobin; a ANOVA analysis with Tukey’s a posteriori comparison was used. F = 4.099, p = 0.018. b Significantly different, p = 0.021, when compared to the Ins/Ins group.