Lóide O Sallum1,2, Vitor S Duarte1,3, Jean M F Custodio1, Eduardo C M Faria1,3, Aline M da Silva3, Rosa S Lima4, Ademir J Camargo1, Hamilton B Napolitano1,2. 1. Grupo de Química Teórica e Estrutural, Universidade Estadual de Goiás, Anápolis, Goiás 75132-903, Brazil. 2. Laboratório de Novos Materiais, Universidade Evangélica de Goiás, Anápolis, Goiás 75083-515, Brazil. 3. Centro de Pesquisa e Eficiência Energética, CAOA Montadora de Veículos LTDA, Anápolis, Goiás 75184-000, Brazil. 4. Faculdade do Instituto Brasil, Anápolis, Goiás 75133-050, Brazil.
Abstract
The use of small molecules, such as chalcones and their derivatives, for more efficient fuels is in increasing demand due to environmental factors. Here, three crystal structures (BH I, II, and III) of cyclohexanone-based chalcones were synthesized and described by single-crystal X-ray diffraction and Hirshfeld surface analysis. The supramolecular modeling analysis on the hyperconjugative interaction energies and QTAIM analysis at the ωB97XD/6-311++G(d,p) level of theory were carried out to analyze the intermolecular interactions in the solid-state. The structure-property relationship, frontier molecular orbital, molecular electrostatic potential, and the experimental calorific value analysis show that the three compounds are a good alternative to be used as an additive for some fuels. Our findings represent a further step forward in the development of cheaper and more efficient fuel additives and pose an opportunity for further investigation on similar analogues.
The use of small molecules, such as chalcones and their derivatives, for more efficient fuels is in increasing demand due to environmental factors. Here, three crystal structures (BH I, II, and III) of cyclohexanone-based chalcones were synthesized and described by single-crystal X-ray diffraction and Hirshfeld surface analysis. The supramolecular modeling analysis on the hyperconjugative interaction energies and QTAIM analysis at the ωB97XD/6-311++G(d,p) level of theory were carried out to analyze the intermolecular interactions in the solid-state. The structure-property relationship, frontier molecular orbital, molecular electrostatic potential, and the experimental calorific value analysis show that the three compounds are a good alternative to be used as an additive for some fuels. Our findings represent a further step forward in the development of cheaper and more efficient fuel additives and pose an opportunity for further investigation on similar analogues.
The
push from the exhaustion of fossil fuels and global warming
problems has increased the demand for alternative bioenergy sources
and improved the efficiency of current fuels.[1] Regarding currently used biofuels, their energetic efficacy is affected
by inherent stability, oxidation, and energy availability limitations.[2] The use of small molecules for these purposes
is an attractive alternative, once they usually are easily synthesized,
cost-wise accessible, and serve for a myriad of different applications,
including the modulation of protein–protein interactions, alteration
of protein function, catalytic activity, and energy source for crucial
chemical reactions.[3] In fact, due to its
physicochemical properties similar to cellulose, the small molecule
α-cyclodextrin has been investigated as an accurate way to unveil
the chemical mechanisms involved during high-temperature conversion
to biofuel.Chalcones and their analogues are either found in
plants or obtained
from specific synthetic pathways and have shown numerous applications
as liquid crystal materials,[4] pH sensors,[5,6] nonlinear optical materials,[7,8] as well as their remarkable
biological properties: antitumor,[9,10] anti-inflammatory,[11] antifungal,[12−14] antibacterial,[12,15,16] and antioxidant.[17−20] Some of these properties can be related to fuel applications, such
as energy efficiency or additives,[21−27] and often fuels such as ethanol and biofuels are prone to suffer
from degradation and oxidation problems, mainly caused by micro-organisms[28−34] or even the lower combustion capacity, therefore, a lower energy
efficiency.[35−39]Chalcone molecular structures have stimulated studies of their
spatial conformation systems, such as π-electronic conjugations,[40] cyclohexanone rings,[41] electronic effects of substituents in the aromatic rings,[42] interaction energies, and electronic properties
obtained by density functional theory (DFT) calculations.[43] Understanding these interactions has been applied
to comprehend these physical chemistry systems and pharmaceutical
and material properties. X-ray crystallography, Hirshfeld surface
analysis, and theoretical studies are handy tools for this subject.Based on these potentials as fuel additives previously described
for chalcones, we hypothesized that cyclohexanone-based analogues
would present the same physicochemical features needed to improve
biofuel’s efficiency. Here we report the results of the (2E,6E)-2,6-bis(4-ethylbenzylidene)cyclohexanone
(BH I), (2E,6E)-2,6-bis(2,4-dichlorobenzylidene)cyclohexanone
(BH II), and (2E,6E)-2,6-bis(4-chlorobenzylidene)cyclohexanone
(BH III) from single-crystal X-ray diffraction (XRD)
and Hirshfeld surface (HS) analysis in order to describe its molecular
and supramolecular architectures. In addition to molecular structure
studies, theoretical calculations such as frontier molecular orbital
(FMO), molecular electrostatic potential (MEP) map, hyperconjugative
interaction energies, counterpoise procedure, quantum theory of atoms
in molecules (QTAIM), and vibrational infrared (IR) spectra assignments
were carried out at the ωB97XD/6-311++G(d,p) level of theory.
Finally, we quantified their energetic potential using a calorimetric
pump, which was then compared to ethanol, biodiesel, diesel, and butanol.
Experimental
and Computational Procedures
Synthesis and Crystallization
The
reaction was carried
out at room temperature where BH I, II,
and III were prepared by the reaction of cyclohexanone
(3.00 mmol) and substituted benzaldehydes (2.00 mmol) in a minimum
amount of absolute methanol (10 mL) as shown in Scheme . Then a 30% KOH solution was added and after
a few minutes of continuous stirring, the reaction was completed,
and the precipitate obtained was collected by filtration. Yellow product
was obtained in 75% yield.
Scheme 1
Chemical Scheme of the Synthesized BH I, II, and III
Crystals of BH I, II, and III were grown in dichloromethane inside a beaker with a known
solvent
volume. Then, the reaction mixture was kept at room temperature for
slow evaporation for 96 h until the formation of crystals. All solvents
and chemicals used in the synthesis were obtained from commercial
sources and used without further purification. Thin-layer chromatography
(TLC) was carried out using Silica gel 60 UV254 plates,
and the solvent system was ethyl acetate–hexane (3:7). Infrared
(IR) spectra were recorded using a PerkinElmer-8400S FT-IR (400–4000
cm–1) with the KBr pellet technique. 1H and 13C nuclear magnetic resonance (NMR) spectra were
recorded on a Bruker 500 MHz NMR spectrometer using CDCl3 as solvent. IR, 1H, and 13C NMR data of the
representative BH I, II, and III are given as follows:
Single-crystal XRD
intensity data collection was performed on a Bruker APEX II CCD diffractometer
fitted with MoKα radiation (0.71073 Å) at 120 K. The structures,
using the ShelXS[44] structure solution program,
were solved by direct methods and refined by least-squares minimization
using the ShelXL[45] refinement package.
The non-hydrogen atoms were refined anisotropically. The hydrogen
atoms were placed geometrically and refined using a riding model with
their Uiso set to 1.2 Ueq of the bonded carbon, except for the CH3, whose Uiso(H) was set to 1.5 Ueq of the corresponding carbon.
The crystallographic information file (CIF) was prepared using Olex2.[46] Also, the artwork representations for publication
were prepared using the programs Ortep[47] and Mercury (version 3.0).[48] Intermolecular
interactions were checked by the Platon software.[49] The BH I, II, and III structures were deposited in the Cambridge Structural Database under
codes 2120122, 2120123, and 2120124. These data can be obtained free
of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html.
Hirshfeld Surface
The HS consists of a spatial map
to visualize the surface of the molecules.[50] It is a useful tool that compares the electron density of a molecule
to the entire crystal and measures the distribution of close contact
interactions. A weight function wa(r) for
a molecule in a crystal was defined by eq ,where ρa(r) is the electron density function of the atom,
centered on the nucleus
a, defined by eq ,ρmol(r)
defines the molecular electron density. In an HS, de is the distance from the nearest nucleus to a molecule
outside the surface, which provides the close intermolecular contacts,
while di is the distance from inside to
the surface, which provides studies of the molecule itself. The normalized
contact distance (dnorm), which combines
the normalized de and di with the van der Waals radius for each atom involved
in this close contact to the surface, is given by eq and was used to analyze intermolecular
interactions.In eq , the rivdw and revdw represent the
van der Waals radii.The shape index is a function of a surface
that allows one to identify
complementarity between molecules in the crystal packing structure
and that can identify hydrophobic intermolecular interactions.[51] Fingerprint plots provide a quantitative value
for the types of intermolecular contacts, also known as frequency
occurrences. The software Crystal Explorer 21.5[52] was used to generate HS intermolecular interactions and
calculated 2D fingerprint plots.
Calorific Power
The calorific value of fuel indicates energy released by combustion
per unit mass. The test to determine the calorific value was carried
out in a calorimetric pump with a combustor surrounded by water. This
analysis followed the ASTM D4809 standard[53] methodologies using an IKA C200 equipment. The combustor is pressurized
(30 bar), and the sample is heated by an electric current that promotes
burning. Burning releases energy into the environment and exchanges
heat with water, generating a change in its temperature. A high precision
resistive sensor measures the change in temperature as a function
of time and, after correlation with the sample mass obtained prior
to burning, the result of the calorific value of the sample is reported.[24,54]
Theoretical
Calculation
The electronic structure calculations
were carried out with the Gaussian 16[55] program package for BH I, II, and III. Full geometry optimization was carried out using DFT,
with exchange-correlation functional ωB97XD[56] and basis set 6-311++G(d,p). This functional includes empirical
dispersion with long-range corrections, making it suitable for noncovalent
interactions. The wave function for the natural bond orbital (NBO)
analysis was carried out at the same level of theory, and the basis
set superposition errors (BSSE) were corrected using the counterpoise
procedure as implemented in the g16 program.[57] Also, the studied electronic properties: the highest occupied molecular
orbital (HOMO), the lowest unoccupied molecular orbital (LUMO) and
MEP were calculated. The QTAIM analysis, using the Multwfn program
(version 3.7),[58] was performed using the
non-hydrogen atoms taken from the crystallographic data, while the
hydrogen atoms were optimized using the same level of theory and were
also calculated assignments of infrared vibrational frequencies.
Results and Discussion
Solid-State Description
Table lists the main IR
absorption bands and also Figure shows the overlapping
of the theoretical and experimental FT-IR spectra for BH I, II, and III. The values of DFT in vibrational
frequencies for the results obtained at the ωB97XD/6-311++G(d,p)
level of theory were scaled by Wang et al. as 0.9461.[59] The experimental measurements of ν(C=O) for
BH I, II, and III occur at
1663, 1660, and 1667 cm–1, respectively, while the
theoretical measurements absorb at 1683, 1688, and 1682 cm–1, respectively, considering the molecule was in the gas phase.
Table 1
Vibrational Assignments of the Theoretical
and Experimental FT-IR for BH I, II, and IIIa
BH I
BH II
BH III
vibrational
modes
exptl freqb
scaled freqb,c
exptl freqb
scaled freqb,c
exptl freqb
scaled freqb,c
ν (Csp2–H) Ard,Alke
3084–3001
3044–3001
3095–3030
3042–3000
3088–3030
3044–3000
ν (Csp3–H)
2965–2853
2957–2876
2972–2845
2935–2859
2929–2835
2932–2849
ν (C=C) Ard
1606, 1580, 1508, 1457
1607, 1482
1600, 1580, 1468
1620, 1575, 1440
1606, 1577, 1486
1617, 1591, 1457
ν (C=O)
and ν (C=C) Alke
1663
1683
1660
1688
1667
1682
δ (C–H) Alke out of plane
828
822
825
817
836
815
ν (C–Cl)
742
746
799
785
These results
were obtained at
the ωB97XD/6-311++G(d,p) level of theory in the gas phase. ν
= stretching; δ = bending.
cm–1.
Scale factor 0.9461.
Ar
= aromatic ring.
Alk = alkene.
Figure 1
Overlapping of the theoretical (red) and
experimental (black) FT-IR
spectra of (a) BH I, (b) BH II, and (c)
BH III.
These results
were obtained at
the ωB97XD/6-311++G(d,p) level of theory in the gas phase. ν
= stretching; δ = bending.cm–1.Scale factor 0.9461.Ar
= aromatic ring.Alk = alkene.Overlapping of the theoretical (red) and
experimental (black) FT-IR
spectra of (a) BH I, (b) BH II, and (c)
BH III.Absorption peaks appear
in the experimental ν(Csp2–H) aromatic
ring for BH I at 1606
cm–1, 1580, 1508, and 1457 cm–1; for BH II these peaks appear at 1600, 1580, and 1468
cm–1; and for BH III they appear at
1606, 1577, and 1486 cm–1, while theoretically,
these values appear for BH I at 1607 and 1482 cm–1; for BH II at 1620, 1575, and 1440 cm–1; and for BH III at 1617, 1591, and 1457
cm–1. It is observed that the ν(Csp3–H) for BH I, II, and III are in the range of 2965–2853 cm–1, 2972–2845 cm–1, and 2929–2835 cm–1, respectively, while the DFT calculations assigned
to the regions of 2957–2876 cm–1, 2935–2859
cm–1, and 2932–2849 cm–1, respectively. Additionally, the experimental measurements of ν(C–Cl)
for BH II and III are 742 and 799 cm–1, while the theoretical band appears in 746 and 785
cm–1.Figure shows the
BH I, II, and III asymmetric
units as an Ortep diagram. With respect to BH I, the
stereochemistry of the C5=C2 is on an (E)-configuration. This
molecule appears in the cyclohexanone as an envelope conformation
confirmed by the ring-puckering parameters Q = 0.5034
Å and ϕ = 360°, as described by Cremer and Pople.[60] Additionally, for BH I, the dihedral
angle C2–C5–C6–C7 has −147.3°, as
shown in Table . Also,
for BH II and III, the stereochemistry of
the C7=C8 and C12=C14 is on an (E,E)-configuration.
These molecules appear in the cyclohexanone as a half boat conformation,
which is confirmed by the ring-puckering parameters Q = 0.529 Å and ϕ = 136.2°, as well as Q = 0.5343 Å and ϕ = 282.02° for BH II and III, respectively. Furthermore, for BH II with dichloro-substituted, the dihedral angle C3–C4–C7–C8
and C12–C14–C15–C16 has 145.6° and −142.0°,
respectively, as shown in Table . Likewise, for BH III, the dihedral angle
C3–C4–C7–C8 has 149.76°. On the other hand,
the dihedral angle C12–C14–C15–C16 between the
terminal ring C15–C20 and the cyclohexanone has −173.12°,
i.e., almost coplanar, as shown in Table .
Figure 2
Ortep diagram of ellipsoids at 50% probability
level with the atomic
numbering scheme for (a) BH I, (b) BH II, and (c) BH III. Hydrogen atoms are in arbitrary radii.
Table 2
Relevant Experimental and Theoretical
Dihedral Angles (deg) for BH I, II, and III
BH
experimental
theoretical
I
O1–C1–C2–C3
–171.9 (2)
–179.0
C1–C2–C3–C4
–33.4 (2)
–29.8
C1–C2–C5–C6
–176.2 (2)
–179.7
C2–C3–C4–C3
59.9 (3)
59.0
C2–C5–C6–C7
–147.3 (2)
–145.9
C2–C5–C6–C11
36.8 (3)
36.0
C5–C2–C3–C4
144.94 (18)
147.3
C8–C9–C12–C13
–165.1 (3)
–178.1
II
O1–C13–C8–C9
–173.7 (3)
169.1
O1–C13–C12–C11
–175.5 (3)
–169.1
C13–C8–C9–C10
17.6 (4)
35.4
C12–C11–C10–C9
64.2 (3)
58.7
C13–C8–C7–C4
179.6 (3)
179.2
C13–C12–C14–C15
–176.4 (3)
–179.2
C8–C13–C12–C14
–172.9 (3)
–164.5
C8–C9–C10–C11
–53.4 (4)
–58.7
C12–C14–C15–C16
–142.0 (3)
–134.0
C3–C4–C7–C8
145.6 (3)
134.0
C5–C4–C7–C8
–35.0 (5)
–48.3
C7–C8–C9–C10
–161.2 (3)
–141.0
Cl1–C1–C6–C5
–176.9 (3)
–179.8
Cl2–C3–C2–C1
178.9 (3)
–179.5
Cl3–C18–C17–C16
178.9 (3)
179.9
Cl4–C16–C17–C18
179.6 (3)
179.5
III
O1–C13–C8–C9
178.3 (1)
178.4
O1–C13–C12–C11
169.0 (1)
–178.4
C13–C8–C9–C10
36.6 (2)
30.1
C12–C11–C10–C9
51.1 (2)
59.0
C13–C8–C7–C4
178.2 (1)
179.9
C13–C12–C14–C15
–179.1 (1)
–179.9
C8–C13–C12–C14
165.6 (1)
–175.7
C8–C9–C10–C11
–63.1 (1)
–59.0
C12–C14–C15–C16
–173.1 (1)
–144.7
C3–C4–C7–C8
149.8 (1)
144.8
C5–C4–C7–C8
–32.4 (2)
–37.0
C7–C8–C9–C10
–140.6 (1)
–147.0
Cl1–C1–C6–C5
–177.6 (1)
–179.5
Cl2–C18–C19–C20
–179.6 (1)
179.5
Ortep diagram of ellipsoids at 50% probability
level with the atomic
numbering scheme for (a) BH I, (b) BH II, and (c) BH III. Hydrogen atoms are in arbitrary radii.Relevant experimental and theoretical dihedral angles are given
in Table . The important
crystallographic parameters of BH I, II,
and III are shown in Table . Detailed intermolecular interactions observed
in all crystal structures are given in Table .
Table 3
Important Crystallographic
Parameters
of BH I, II, and III
crystal data
BH I
BH II
BH III
empirical formula
C24 H26 O
C20 H14 O
Cl4
C20 H16 O
Cl2
formula weight/g mol–1
330.45
412.11
343.23
temperature/K
120(2)
120(2)
120(2)
radiation type
MoKα
MoKα
MoKα
crystal system
orthorhombic
orthorhombic
monoclinic
space group
Cmc21
Pbca
P21/n
unit cell dimensions
a = 20.72(4)
Å
α = 90°
a = 14.26(2)
Å
α = 90°
a = 9.82(9)
Å
α = 90°
b = 14.80(4)
Å
β = 90°
b = 7.78(13)
Å
β = 90°
b = 16.48(15)
Å
β = 90°
c = 6.03(12)
Å
γ = 90°
c = 31.37(5)
Å
γ = 90°
c = 10.46(10)
Å
γ = 90°
volume/ Å3
1852.2(7)
3484.7(10)
1630.6(3)
Z
4
8
4
density (calculated)/ g cm–3
1.185
1.571
1.398
F(000)
712
1680
712
reflections collected
14571
61722
30834
independent reflections
2375 [R(int) = 0.0356]
4366 [R(int) = 0.0856]
4036 [R(int) = 0.0223]
data/restraints/parameters
2375/1/155
4366/0/238
4036/0/229
goodness-of-fit on F2
1.047
1.262
1.077
final R indexes [I > 2σ(I)]
R1 = 0.0357, wR2 = 0.0868
R1 = 0.0629, wR2 = 0.1289
R1 = 0.0325, wR2 = 0.0785
final R indexes [all data]
R1 = 0.0448,
wR2 = 0.0917
R1 = 0.0793, wR2 = 0.1342
R1 = 0.0379, wR2 = 0.0816
extinction
coefficient
n/a
n/a
n/a
largest diff. peak and
hole/e Å–3
0.18/–0.19
0.53 and −0.41
0.36 and −0.26
Table 4
Hydrogen-Bond Geometry (Å, deg)
in the Crystal Structure of BH I, II, and III
BH
D–H···A
D–H
D···A
H···A
D–H···A
symmetry code
I
C3–H3B···O1
0.98
3.277
2.55
130.08
x, y, −1 + z
C13–H13B···H13B–C13
1.05
2.650
1.65
154.83
–1 + x, y, z
II
C10–H10A···O1
0.96
3.506
2.54
177.00
1/2 – x, 1/2 + y, z
C20–H20···O1
0.95
3.225
2.33
157.00
1/2 – x, −1/2 + y, z
C17–H17···Cl3
0.97
3.587
2.74
146.00
1 – x, −y, 1 – z
III
C6–H6···π
0.94
3.623
2.71
159.63
–1/2 + x, 1.5 – y, −1/2 + z
C10–H10B···Cl1
0.97
3.799
2.89
154.87
–1 + x, y, z
C18–Cl2···Cl1
1.74
5.023
3.30
169.18
–2 + x, y, −1 + z
The BH I is crystallized in the orthorhombic system
with noncentrosymmetric space group Cmc21. In this case, being a centrosymmetric molecule and lying on a crystallographic
mirror plane, its asymmetric unit comprises only one-half-molecule
(Z′ = 0.5) of the compound. The crystal packing
of BH I appears in an infinite chain formed by C3–H3B···O1 interaction
along the c axis, which can be described as C11(5)[61] (Figure a). Further, C13–H13B···H13B–C13 dihydrogen
contact is possible to observe along the a-axis,
also generating an infinite chain (Figure b). Figure c shows the packing of BH I, formed by dihydrogen contact
at the center of the unit cell and the C3–H3B···O1 interaction lying on a crystallographic
mirror plane.
Figure 3
Intermolecular interactions depicting (a) C3–H3B···O1, (b) C13–H13B···H13B–C13 dihydrogen
contact, and (c) the crystalline packing of BH I.
Intermolecular interactions depicting (a) C3–H3B···O1, (b) C13–H13B···H13B–C13 dihydrogen
contact, and (c) the crystalline packing of BH I.The BH II is crystallized in the orthorhombic
system
with centrosymmetric space group Pbca, with one molecule
in the asymmetric unit (Z = 8). The crystal packing
of BH II is formed by C10–H10A···O1 and C20–H20···O1 interactions, appearing as bifurcated
interaction along the b axis, which can be described
as C21(9), as shown in Figure a. Further, C17–H17···Cl3 appears as a dimer around the inversion center along the c axis, which can be described as R22(8) (Figure b). Figure c shows the packing of BH II, formed by C17–H17···Cl3 lying at the center of the unit cell and around the inversion
centers.
Figure 4
Intermolecular interactions depicting (a) C10–H10A···O1 and C20–H20···O1, (b) C17–H17···Cl3, and (c) the crystalline
packing of BH II.
Intermolecular interactions depicting (a) C10–H10A···O1 and C20–H20···O1, (b) C17–H17···Cl3, and (c) the crystalline
packing of BH II.The BH III crystallized in the monoclinic system with
centrosymmetric space group P21/n, with one molecule in the asymmetric unit (Z = 4). The crystal packing of BH III, differently from
the other BHs, is formed by C6–H6···π
interaction appearing in a zigzag chain along the a axis (Figure a).
Further, bifurcated contacts through C10–H10B···Cl1 and C1–Cl1···Cl2–C18 appears
in an infinite chain along the a axis, as shown in Figure b. Figure c shows the packing of BH III, formed by a zigzag chain lying on a crystallographic
glide plane. On the other hand, at the center of the unit cell and
around the inversion center, no interaction is observed.
Figure 5
Intermolecular
interactions depicting (a) C6–H6···π,
(b) C10–H10B···Cl1 and C18–Cl2···Cl1, and (c) the crystalline
packing of BH III.
Intermolecular
interactions depicting (a) C6–H6···π,
(b) C10–H10B···Cl1 and C18–Cl2···Cl1, and (c) the crystalline
packing of BH III.In order to interpret the intermolecular interactions, we employed
HS dnorm analysis. These interactions
are verified in de and di, indicating the distance within the molecule between
the external and internal nucleus of the HS, respectively. Additionally, de and di correspond
to acceptor and donor regions, respectively. The HS mapped over dnorm (range of −0.511 to 1.470 Å)
is shown in Figure .
Figure 6
Hirshfeld surfaces indicating (a and b) C3–H3B···O1 and C13–H13B···H13B–C13 intermolecular
contacts for BH I; (c–e) C10–H10A···O1, C20–H20···O1, C17–H17···Cl3 intermolecular contacts
and π···π stacking for BH II and (f–h) C6–H6···π,
C10–H10B···Cl1, and C18–Cl2···Cl1 intermolecular contacts for BH III are represented
by dotted lines.
Hirshfeld surfaces indicating (a and b) C3–H3B···O1 and C13–H13B···H13B–C13 intermolecular
contacts for BH I; (c–e) C10–H10A···O1, C20–H20···O1, C17–H17···Cl3 intermolecular contacts
and π···π stacking for BH II and (f–h) C6–H6···π,
C10–H10B···Cl1, and C18–Cl2···Cl1 intermolecular contacts for BH III are represented
by dotted lines.For BH I, the red spots correspond to a stronger C3–H3B···O1 contact
(Figure a), which
is also related to the shorter H···H contact (Figure b). In the same way,
for BH II, the red spots correspond to C10–H10A···O1 and C20–H20···O1 interactions,
as shown in Figure c. Also, Figure d
is related to a dimer C17–H17···Cl3 interaction. The shape index HS also is a tool for the identification
of hydrophobic interactions like π···π.
The π···π stacking in the BH II is identified by the red and blue triangle in the shape index surface,
as shown in Figure e. The distance between centroids, formed between the center of aromatic
rings C1–C6 (Cg1) and C15–C20 (Cg3), is 3.88 Å
providing additional stability for the structure. For BH III, the red spots correspond to C6–H6···π
and C10–H10B···Cl1 interactions, as shown in Figure f,g, respectively. Also, Figure h is related to a halogen Cl···Cl
contact.The 2D fingerprint plot of BH I, II,
and III is shown in Figure . From the 2D fingerprint plot, most contact
is due to H···H interaction, which makes up 68.1% of
the HS of BH I and is characterized by the thin spike
of the fingerprint 2D plot. The contribution of O···H/H···O
interactions of BH I represents 5.6% of the HS (Figure a). For BH II, the contribution of H···H and C···H/H···C
contacts represents 23.5% and 15.3% of the HS, respectively. The polar
dimer interactions Cl···H/H···Cl represents
32.7%. Another feature is the existence of C···C interaction,
which is responsible for 5.1% of HS. The interaction O···H/H···O
is characterized by the small spikes in the bottom of the fingerprint
plot, representing 6.0% of the HS, as shown in Figure b. For BH III, most contact
is due to H···H interaction which makes up 33.5% of
the HS. The contribution of C···H/H···C
interactions of BH III represents 27.4% of the HS. The
polar interaction Cl···H/H···Cl represents
22.5%. The contribution of Cl···Cl contacts are characterized
by the thin spike at the center of the 2D fingerprint plot (Figure c).
Figure 7
Fingerprint plot quantifies
the contacts for (a) BH I, (b) BH II, and
(c) BH III.
Fingerprint plot quantifies
the contacts for (a) BH I, (b) BH II, and
(c) BH III.The root mean squared
(RMS) values predicted by the Mercury program
package,[48] comparing calculated and experimental
geometries, were 0.0047, 0.0131, and 0.0061 for BH I, II, and III, respectively. The overlay depicts
a good correlation between the geometric parameters for all the structures.
The difference for BH I (Figure a), representing about 7.29%, is around C8–C9–C12–C13
with experimental (−165.1°) and theoretical (−178.1°)
dihedral angles, as shown in Table . The difference for BH II (Figure b), representing about 7.90%,
is around C3–C4–C7–C8 with experimental (145.6°)
and theoretical (−134.0°) dihedral angles. Additionally,
another difference for BH II, representing about 12.5%,
is around C7–C8–C9–C10 with experimental (−161.2°)
and theoretical (−141.0°) dihedral angles, as shown in Table . The difference for
BH III (Figure c), representing about 16.40%, is around C12–C14–C15–C16
with experimental (−173.1°) and theoretical (−144.7°)
dihedral angles, as shown in Table .
Figure 8
Overlapping of theoretical (ωB97XD/6-311++G(d,p))
(black)
and X-ray structures for (a) BH I (green), (b) BH II (purple), and (c) BH III (blue) in respect
to the aromatic ring.
Overlapping of theoretical (ωB97XD/6-311++G(d,p))
(black)
and X-ray structures for (a) BH I (green), (b) BH II (purple), and (c) BH III (blue) in respect
to the aromatic ring.
Supramolecular Modeling
Analysis and Energy
The investigation
into the chalcones’ chemical structure and its properties[62−65] helps us to understand the activity of these molecules as a possible
application in fuels.[22] Actually, the world
energy matrix has some fuels with advantages over fossil fuels. However,
these fuels have stability, oxidation, and energy availability problems,
as with ethanol and biodiesel.[28,33] The calorific value
test for BH I, II, and III shows
values of 7284.0 kcal/kg, 6430.2 kcal/kg, and 7298.7 kcal/kg, respectively
(Table ). In addition,
we performed calorific value tests for gasoline (common type C), hydrated
ethanol, and n-butanol for comparative parameters. Table also presents different
calorific values for various types of biodiesel.
Table 5
Calorific Value for BH I, II, III, and Some Fuelsa
cmpd
calorific
value
fuel
calorific value
BH I
7284.0
gasoline
9775
BH II
6430.2
ethanol
6906
BH III
7298.7
butanol
8509
All
units for calorific power
are in kcal/kg. BD: Biodiesel. BD BX, where X refers to the percentage
by volume of the biodiesel.
All
units for calorific power
are in kcal/kg. BD: Biodiesel. BD BX, where X refers to the percentage
by volume of the biodiesel.The calorific value results reveal that BH I, II, and III have good energy availability, even
a little lower than biodiesel (Figure ). However, BH I and III (7284.0
and 7298.7 kcal/kg) have a higher calorific value than ethanol (6906.0
kcal/kg), while BH II presents a small difference compared
to ethanol. Due to the susceptibility and good energy availability
of chalcones, they can be associated with fuels, since the high calorific
value in fuels is associated with better performance.
Figure 9
Calorific value for BH I, II, III, and fuels: biodiesel,
diesel, hydrated ethanol, and n-butanol. The calorific
value of biodiesel varies with its composition;
therefore, we have a comparative parameter. We performed an average
of the values described in Table . Average of the values described in Table .
Calorific value for BH I, II, III, and fuels: biodiesel,
diesel, hydrated ethanol, and n-butanol. The calorific
value of biodiesel varies with its composition;
therefore, we have a comparative parameter. We performed an average
of the values described in Table . Average of the values described in Table .The FMO obtained from Kohn–Sham analysis for BH I, II, and III was carried out at ωB97XD/6-311++G(d,p)
level of theory, and they are shown in Figure . The FMO analysis of bond-antibonding interactions
is a good approximation for ionization (Lewis base) and electron affinity
(Lewis acid) energies. The HOMO, the electron donor for BH I, II, and III, is located mainly on the
aromatic rings. It is a π-bonding orbital, which is characteristic
of the electrophilic region. The HOMO energy for BH I, II, and III is negative (−185.79,
−200.34, and −194.86 kcal/mol, respectively). The LUMO
for BH I, II, and III is an
π-antibonding orbital, and it is spread out through the molecular
rings and the carbonyl group. The LUMO energy for BH I, II, and III is −10.69, −20.34,
and −19.69 kcal/mol, respectively. These results show that
the BH I, II, and III compounds
are electrophilic species.
Figure 10
Frontier molecular orbitals derived from Kohn–Sham
analysis
at ωB97XD/6-311++G(d,p) level of theory with the isovalue of
0.02 atomic units: the HOMO π-bonding orbital and the LUMO π-antibonding
orbital for (a) BH I, (b) BH II, and (c)
BH III.
Frontier molecular orbitals derived from Kohn–Sham
analysis
at ωB97XD/6-311++G(d,p) level of theory with the isovalue of
0.02 atomic units: the HOMO π-bonding orbital and the LUMO π-antibonding
orbital for (a) BH I, (b) BH II, and (c)
BH III.NBO analysis helps us
better understand the nature of intermolecular
interactions in the solid state. For the reason that one of the aims
of this work is to explain the supramolecular arrangement of the BH I, II, and III compounds, the atomic
coordinates of non-hydrogen atoms were taken directly from the crystallographic
data. However, as the coordinates of the hydrogen atoms were not experimentally
determined, it was necessary to optimize them using the wB97XD/6-311++G(d,p)
level of theory. The same level of theory was used to obtain the wave
function for the NBO analysis. The hyperconjugative interaction energies
were estimated from the second-order perturbation formula, as described
in eq :where ⟨σ|F|σ⟩2 is the Fock matrix element between the i and j NBO orbitals. εσ* and εσ are the energies of σ* and σ NBO orbitals, respectively,
and nσ stands for the σ donor
orbital population. NBO analysis provides a method for studying hyperconjugative
interaction in a molecular system.[91,92] The higher
the E(2) value, the more intensive the interaction
between electron donor and acceptor, respectively. Figure shows the calculated NBO
orbitals.
Figure 11
Intermolecular donor–acceptor natural bond interactions
in (a and b) C3–H3B···O1 and C13–H13B···H13B–C13 for BH I; (c–e)
C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3 for BH II; and (f–h) C6–H6···π, C10–H10B···Cl1, and C18–Cl2···Cl1 for BH III.
Intermolecular donor–acceptor natural bond interactions
in (a and b) C3–H3B···O1 and C13–H13B···H13B–C13 for BH I; (c–e)
C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3 for BH II; and (f–h) C6–H6···π, C10–H10B···Cl1, and C18–Cl2···Cl1 for BH III.For BH I, Figure a shows the orbital interaction between
the lone pair
orbital of the O1 atom and the σ* antibonding orbital
of the C3–H3B with a stabilization energy
of 0.38 kcal mol–1. Along with the dihydrogen contacts
(Figure b), higher
stabilization energy is observed (1.00 kcal mol–1). For BH II, Figure c shows the orbital interaction between the π
bonding orbital of the O1 atom and the σ* antibonding
orbital of the C10–H10A with a stabilization
energy of 0.96 kcal mol–1. The orbital interaction
between the lone pair orbital of the O1 atom and the σ*
antibonding orbital of the C20–H20 is
shown in Figure d with a stabilization energy of 1.52 kcal mol–1. Along with the dimer interaction (Figure e) between the lone pair orbital of the
Cl3 atom and the σ* antibonding orbital of the C17–H17, it is observed a stabilization energy
of 0.53 kcal mol–1.For BH III, Figure f shows
the orbital interaction between the σ
bonding orbital of the C6–H6 atom and
the π* antibonding orbital of the O1–C13 with a stabilization energy of 0.49 kcal mol–1. The orbital interaction between the lone pair orbital of the Cl1 atom and the σ* antibonding orbital of the C10–H10B is shown in Figure g with a stabilization energy of 0.65 kcal
mol–1. Along with the halogen contact (Figure h) between the
lone pair orbital of the Cl1 atom and the σ antibonding
orbital of the Cl2, a stabilization energy of 0.63 kcal
mol–1 is observed.The MEP is a physicochemical
tool that gives information about
molecular interactions and helps predict the reactive sites to be
targeted in a chemical reaction. The electrostatic potential at a
given point ρ(r) in the vicinity of a molecule
can be calculated by eq :where V(r) is the potential energy
by a positive unit charge at point r; Zα is the nuclear charge
of the atom α located at position Rα, and ρ(r′) is the electron density.The tridimensional MEP representation (Figure ) for BH I, II, and III shows that the most negative region (red)
is located on the oxygen atom of the carbonyl group, with a value
of −35.76, −30.93, and −30.12 kcal/mol, respectively.
On the other hand, the positive region (blue) is around the cyclohexanone
hydrogen atoms, with a value of 12.29, 22.02, and 19.39 kcal/mol,
respectively. In conclusion, due to C–H···O
interactions in the crystal structures, we can assume an electrophilic
attack on this carbonyl group’s region.
Figure 12
Molecular electrostatic
potential surface mapped for (a) BH I, (b) BH II and (c) BH III showing
the red-colored region rich in electrons and the blue-colored region,
which is electron depleted. The density isovalue of 4.0 × 10–4 electrons/bohr3 was used to generate the
molecular electrostatic potential surfaces.
Molecular electrostatic
potential surface mapped for (a) BH I, (b) BH II and (c) BH III showing
the red-colored region rich in electrons and the blue-colored region,
which is electron depleted. The density isovalue of 4.0 × 10–4 electrons/bohr3 was used to generate the
molecular electrostatic potential surfaces.Also, the supramolecular modeling analysis on the hyperconjugative
interaction energies and QTAIM analysis, using theoretical calculations
at the ωB97XD/6-311++G(d,p) level of theory, were calculated
to prove the existence of intermolecular interactions and to classify
their nature. Figure shows that, in quantum mechanic calculations, there are two types
of interaction for BH I, II, and III in the solid-state, which we call here as side-to-side and head-to-head
dimers. The basis set superposition errors (BSSE) were corrected using
the counterpoise procedure as implemented in the g16 program.[57] For BH I, Figure a shows that the side-to-side dimer interaction
energy is −10.60 kcal/mol, showing powerful and attractive
energy for dimers. The head-to-head interaction energy (Figure b) for BH I dimer is 1.19 kcal/mol. This interaction energy is negligible
and repulsive for the dimers. Consequently, we can assume that the
side-to-side interaction energies are the driving forces for the BH I molecular arrangement in the solid-state.
Figure 13
Complexation energies
obtained at the ωB97XD/6-311++G(d,p)
level of theory: side-to-side and head-to-head dimers, respectively,
(a and b) C3–H3B···O1 and C13–H13B···H13B–C13 for BH I; (c and d)
C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3 for BH II; and (e and f) C6–H6···π, C10–H10B···Cl1, and C18–Cl2···Cl1 for BH III.
Complexation energies
obtained at the ωB97XD/6-311++G(d,p)
level of theory: side-to-side and head-to-head dimers, respectively,
(a and b) C3–H3B···O1 and C13–H13B···H13B–C13 for BH I; (c and d)
C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3 for BH II; and (e and f) C6–H6···π, C10–H10B···Cl1, and C18–Cl2···Cl1 for BH III.For BH II, Figure c shows that the side-to-side dimer interaction
energy
is −19.59 kcal/mol, showing powerful and attractive energy
for dimers. The head-to-head interaction energy (Figure d) for the BH II dimer is −0.53 kcal/mol. Consequently, we can assume that
both the side-to-side and head-to-head interaction energies are the
driving forces for the BH II molecular arrangement in
the solid-state.For BH III, Figure e shows that the side-to-side
dimer C6–H6···π
interaction energy is −10.73
kcal/mol. Further, another side-to-side dimer (i.e., C10–H10B···Cl1) interaction
energy is −5.48 kcal/mol, showing powerful and attractive energy
for the molecule. As well as BH I, the head-to-head C18–Cl2···Cl1 dimer
interaction energy (Figure f) for BH III is 0.31 kcal/mol. This interaction
energy is also negligible and repulsive for the dimers. Consequently,
we can assume that the side-to-side interaction energies are the driving
forces for the BH III molecular arrangement in the solid
state.The QTAIM analysis was carried out to understand the
chemical nature
of dimers’ interactions.[93,94] The interactions that
occur in BH I are of type C3–H3B···O1 short contact and C13–H13B···H13B–C13 dihydrogen contact, as shown by bond critical point (BCP)
analysis (Figure ). The BCP describes the stationary point between donor and acceptor
atoms, confirming the existence of hydrogen bonding interaction. The
QTAIM’s electron density ρ(r) at the
BCP of proton-acceptor is 0.032 and 0.050 au for C3–H3B···O1 and C13–H13B···H13B–C13,
respectively. The positive Laplacians, 0.040 and 0.28 au for C3–H3···O1 and C13–H13B···H13B–C13, respectively, are observed for noncovalent hydrogen bonds
interactions. The total energy density value E(r) is small and negative for C3–H3···O1 and C13–H13B···H13B–C13,
as shown in Table .
Figure 14
Molecular
graph for BH I: (a) side-to-side C3–H3B···O1 interaction
and (b) head-to-head C13–H13B···H13B–C13 contact, showing the BCP in yellow.
Table 6
QTAIM Parameters Describing Contacts
and Intermolecular Interactions for BH I, II, and III [Electron Density at BCP (ρ(r)), Laplacian (▽2 ρ(r)), The Potential Electron Energy Density (V(r)), The Kinetic Electron Energy Density (G(r)), and The Total Electron Energy Density (E(r)). All Values Are Given in Atomic Units
(a.u.)]
BCP
interaction
ρ(r)
▽2ρ(r)
V(r)
G(r)
E(r)
kind of interaction
BH I
1
C3–H3B···O1
0.03258
0.04070
–0.01958
0.01488
–0.00470
weak
2
C13–H13B···H13B–C13
0.05043
0.28115
–0.10856
0.08942
–0.01913
weak
BH II
3
C10–H10A···O1
0.05882
0.07459
–0.03009
0.02437
–0.00572
weak
4
C20–H20···O1
0.08763
0.30248
–0.08025
0.07793
–0.00231
weak
5
C17–H17···Cl3
0.01996
0.09355
–0.02006
0.02172
0.00166
weak
BH III
6
C6–H6···π
0.06380
0.12316
–0.03976
0.03527
–0.0044
weak
7
C10–H10B···Cl1
0.05321
0.19465
0.01753
0.01556
0.03309
weak
8
C18–Cl2···Cl1
0.02586
0.01479
–0.00782
0.00576
–0.00206
weak
Molecular
graph for BH I: (a) side-to-side C3–H3B···O1 interaction
and (b) head-to-head C13–H13B···H13B–C13 contact, showing the BCP in yellow.The interactions that occur in BH II are of type C10–H10A···O1 and
C20–H20···O1 short contact and C17–H17···Cl3 dimer interaction, as shown by BCP analysis (Figure ). The QTAIM’s electron
density ρ(r) at the BCP of proton-acceptor
is 0.058, 0.087, and 0.019 au for C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3, respectively. The positive
Laplacians, 0.074, 0.30, and 0.093 au for C10–H10A···O1, C20–H20···O1, and C17–H17···Cl3, respectively, are observed
for noncovalent hydrogen bonds interactions. The total energy density
value E(r) is small and negative
for C10–H10A···O1 and C20–H20···O1, as shown in Table . On the other hand, for C17–H17···Cl3, the total energy density value E(r) is small and positive.
Figure 15
Molecular
graph for BH II: (a) side-to-side C10–H10A···O1 and
C20–H20···O1 short contacts and (b) head-to-head C17–H17···Cl3 dimer interaction, showing
the BCP in yellow.
Molecular
graph for BH II: (a) side-to-side C10–H10A···O1 and
C20–H20···O1 short contacts and (b) head-to-head C17–H17···Cl3 dimer interaction, showing
the BCP in yellow.The interactions in
BH III are of type C6–H6···π, C10–H10B···Cl1 short contact and halogen
contact C18–Cl2···Cl1 as shown by BCP analysis (Figure ). The QTAIM’s electron density ρ(r) at the BCP of proton-acceptor is 0.063, 0.053, and 0.025
au for C6–H6···π,
C10–H10B···Cl1, and C18–Cl2···Cl1, respectively. The positive Laplacians, 0.12, 0.19, and 0.014
au for C6–H6···π,
C10–H10B···Cl1, and C18–Cl2···Cl1, respectively, are observed for noncovalent hydrogen bonds
interactions. The total energy density value E(r) is small and negative for C6–H6···π and C18–Cl2···Cl1, as shown in Table . On the other hand, for C10–H10B···Cl1,
the total energy density value E(r) is small and positive. We can conclude from the QTAIM analysis
that these interactions for all BH I, II, and III dimers can be classified as van der Waals
or closed-shell interactions.
Figure 16
Molecular graph for BH III: (a and b) side-to-side
C6–H6···π and C10–H10B···Cl1 short
contacts and (c) head-to-head C18–Cl2···Cl1 contact, showing the BCP in yellow.
Molecular graph for BH III: (a and b) side-to-side
C6–H6···π and C10–H10B···Cl1 short
contacts and (c) head-to-head C18–Cl2···Cl1 contact, showing the BCP in yellow.Energy availability is directly dependent upon
the molecular structure,
such as the number of carbons, chemical energy bond interactions,
chemical stability, and molecular sites susceptible to the occurrence
of reactions. Thus, its thermodynamic properties influence fuel energy
efficiency. The difference in the calorific values between BH I, II, and III is related to their
supramolecular arrangement formed by chemical energy interactions
presented in these compounds. MEP calculation indicates the carbonyl
group’s region where the burning reactions can occur, which
can be involved with higher energy values.[95−97] Additionally,
the HOMO and LUMO are related to excitation energies and GAP energy
(EGAP = ELUMO – EHOMO) in some situations can
be an indicator of kinetic stability (large GAP values are associated
with kinetic stability).[98−107] For some compounds used to preserve fuels properties, this parameter
is described in the literature (toluene derivative [EGAP = 114.1 kcal/mol],[108] butylated
hydroxytoluene [EGAP = 130.5 kcal/mol],[109] thiazolidinone [EGAP = 115.1 kcal/mol],[110] ether molecules
[EGAP = 96.7 kcal/mol][111]). Note that, according to the GAP values, the molecules
analyzed in this work are kinetically more stable (BH I 175.1 kcal/mol, BH II 180 kcal/mol, BH III 175.17 kcal/mol). The structural description of these molecules,
theoretical parameters, and experimental analysis of the calorific
value provides a good understanding of the structure and its relationship
with some properties. This information can support application studies
or more specific theoretical analyses.
Conclusions
In
this work, three crystal structures of chalcone based on cyclohexanone
core have been extensively characterized. All these molecules appear
as the dienones in the (E,E)-configuration. For BH I,
the cyclohexanone appears as an envelope conformation, and for BH II and III, it appears as a half-boat conformation.
The crystal packing for BH I was investigated by C–H···H–C
dihydrogen contact and nonclassical hydrogen bonding C–H···O,
which were observed on HS topological analysis (68.1% of H···H
interaction and 5.6% of O···H interaction). The crystal
packing for BH II was investigated by nonclassical hydrogen
bonding C–H···O, C–H···Cl,
and π···π stacking, which were observed
on HS topological analysis (6.0% of O···H interaction,
32.7% of Cl···H interaction, and 5.1% π···π
stacking). The crystal packing for BH III was investigated
by C–H···π interaction, nonclassical hydrogen
bonding C–H···Cl, and halogen Cl···Cl
contacts, which were observed on HS topological analysis (27.4% of
C···H interaction, 22.5% of Cl···H interaction,
and 2.9% Cl···Cl contacts). The calculated and experimental
geometries parameters depict a good correlation for all the structures.The calorific value indicated good energy availability for these
compounds, thus being able to support other studies of this application.
Theoretical calculations using the counterpoise procedure conclude
that the side-to-side interaction energies are the driving forces
for the BH I, II, and III molecular
arrangements in the solid state. We can conclude from the QTAIM analysis
that these interactions for all BH I, II, and III dimers can be classified as van der Waals
or closed-shell interactions. Additionally, FMO calculation indicates
that the BH I, II, and III compounds
are electrophilic species. Also, MEP calculation indicates the susceptible
electrophilic attack on this carbonyl group’s region.
Authors: J R Dimmock; N W Hamon; K W Hindmarsh; A P Sellar; W A Turner; G H Rank; A J Robertson Journal: J Pharm Sci Date: 1976-04 Impact factor: 3.534
Authors: J R Dimmock; K K Sidhu; J W Quail; Z Jia; M J Duffy; R S Reid; D L Kirkpatrick; L Zhu; S M Fletcher Journal: J Pharm Sci Date: 1992-11 Impact factor: 3.534