| Literature DB >> 35441809 |
Shengsheng Li1,2, Shujie Liu3,4.
Abstract
BACKGROUND: Tenderness is the main quality of meat products. However, the meat tenderness formation is a complex biological process, and pathways and proteins that affect the tenderness of yak meat are unknown.Entities:
Keywords: bioinformatics; label-free; proteomics; tenderness; yak meat
Mesh:
Substances:
Year: 2022 PMID: 35441809 PMCID: PMC9297797 DOI: 10.1002/vms3.801
Source DB: PubMed Journal: Vet Med Sci ISSN: 2053-1095
Changes in the Warner–Bratzler shear force (WBSF) values of yak tenderloin during the storage period (0, 3, and 7 days) at 3 ± 1℃
| Index | Storage time/day | ||
|---|---|---|---|
| Attribute | 0 | 3 | 7 |
| WBSF/N | 55.21 ± 2.36c | 29.58 ± 1.26b | 25.11± 0.23a |
Note: The results are expressed as the mean standard deviation. Means with different letters (a, b, and c) are different (p < 0.05).
FIGURE 1Hierarchical clustering analysis (HCA) of differentially abundant proteins, including three biological replicates with yak tenderloin stored at days 0, 3, and 7. The image presents the relative abundance of proteins using different colours, where dark red represents higher intensity and dark purple represents lower intensity
FIGURE 2Quantitative analysis of proteins identified by proteomic analysis
FIGURE 3Classification of differential expression proteins identified by gene ontology (GO) functional classification
FIGURE 4Classification of differential expression proteins identified by KEGG pathway enrichment analysis
FIGURE 5Protein–protein interaction networks of the differentially abundance proteins of yak tenderloin during postmortem storage based on the analysis by String10.0 software. The network nodes represent proteins from the Bos Taurus database, and the lines are the predicted functional annotations (red line: the presence of fusion evidence; green line: neighbourhood evidence; blue line: cooccurrence evidence; purple line: experimental evidence; yellow line: text mining evidence; light blue line: database evidence; and black line: coexpression evidence)
Parallel reaction monitoring (PRM) profiles of proteins at days 0, 3, and 7. Three biological replicates were run for each sample
| label‐free | PRM | ||||||
|---|---|---|---|---|---|---|---|
| Accession | Gene names | Ratio 3/0 | Ratio 7/0 | Ratio 7/3 | Ratio 3/0 | Ratio 7/0 | Ratio 7/3 |
| A0A3Q1LP42 | HSPB7 | 0.55 | 0.66 | 1.18 | 0.79 | 0.89 | 1.13 |
| A0A3Q1MG42 | MYH11 | 0.16 | 0.24 | 1.48 | 0.21 | 0.22 | 1.04 |
| A0A3Q1NA44 | COL1A2 | 0.37 | 0.56 | 1.52 | 0.35 | 0.59 | 1.67 |
| A0A452DID9 | MYL6 | 0.54 | 0.45 | 0.83 | 0.49 | 0.57 | 1.16 |
| P02453 | COL1A1 | 0.39 | 0.53 | 1.37 | 0.37 | 0.53 | 1.43 |
| P04258 | COL3A1 | 0.39 | 0.61 | 1.59 | 0.24 | 0.61 | 2.57 |
| P12763 | AHSG | 0.72 | 0.62 | 0.87 | 0.63 | 0.66 | 1.06 |
| P23934 | NDUFS6 | 0.67 | 0.56 | 0.83 | 0.42 | 0.51 | 1.25 |
| Q148H2 | MYL6B | 0.57 | 0.33 | 0.58 | 0.44 | 0.32 | 0.74 |
| Q3ZBY4 | ALDOC | 0.63 | 0.54 | 0.85 | 0.71 | 0.76 | |