Literature DB >> 35439937

Correction: A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes.

Elaheh Rostamzadeh Mahdabi1, Ali Esmailizadeh1, Ahmad Ayatollahi Mehrgardi1, Masood Asadi Fozi2.   

Abstract

Entities:  

Year:  2022        PMID: 35439937      PMCID: PMC9016933          DOI: 10.1186/s12711-022-00720-y

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


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Correction to: Genet Sel Evol (2021) 53:72 https://doi.org/10.1186/s12711-021-00664-9

After publication of this work [1], we noticed that (1) we had not clearly stated that the data are publicly available and (2) we had not cited the original paper [2]. Therefore, the following sections “Background”, “Methods”, “Availability of data and materials” and “References” are incomplete and should be amended as follows.

Background

Page 1, first paragraph of the “Background” section where we stated “that domestic chicken originated from the Red Jungle fowl (Gallus gallus) in the south and Southeast Asia”, the following sentence is missing: “Recently, a comprehensive study, which analyzed 863 whole-genome sequences from a worldwide sampling of chickens and representatives of all four species of wild jungle fowl and each of the five subspecies of red jungle fowl (RJF), concluded that domestic chickens were initially derived from the RJF subspecies Gallus gallus spadiceus whose present-day distribution is predominantly in southwestern China, northern Thailand and Myanmar [2]”.

Methods

Sampling and genome sequencing

Page ‘3’, first paragraph, line ‘10’ where we described the preparation of DNA samples, the following sentence is missing: “Whole-genome sequencing of the samples using the next-generation sequencing technique was conducted within the framework of the Global Chicken Genome Project (http://chicken.ynau.edu.cn/index/about/index.html) led by the Kunming Institute of Zoology, Chinese Academy of Sciences (KIZ-CAS) and described by Wang et al. [2-5]”.

Availability of data and materials

The following sentence “The datasets used for the current study are available from the corresponding author upon reasonable request” should read: “The datasets used for the current study were from Wang et al. [2]. The raw sequencing data, alignment of BAM files, and genotypes (VCF) are available in the ChickenSD database (http://bigd.big.ac.cn/chickensd/)”.
  5 in total

1.  Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens.

Authors:  Ming-Shan Wang; Yan Li; Min-Sheng Peng; Li Zhong; Zong-Ji Wang; Qi-Ye Li; Xiao-Long Tu; Yang Dong; Chun-Ling Zhu; Lu Wang; Min-Min Yang; Shi-Fang Wu; Yong-Wang Miao; Jian-Ping Liu; David M Irwin; Wen Wang; Dong-Dong Wu; Ya-Ping Zhang
Journal:  Mol Biol Evol       Date:  2015-03-18       Impact factor: 16.240

2.  A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes.

Authors:  Elaheh Rostamzadeh Mahdabi; Ali Esmailizadeh; Ahmad Ayatollahi Mehrgardi; Masood Asadi Fozi
Journal:  Genet Sel Evol       Date:  2021-09-09       Impact factor: 5.100

3.  An Evolutionary Genomic Perspective on the Breeding of Dwarf Chickens.

Authors:  Ming-Shan Wang; Newton O Otecko; Sheng Wang; Dong-Dong Wu; Min-Min Yang; Yi-Long Xu; Robert W Murphy; Min-Sheng Peng; Ya-Ping Zhang
Journal:  Mol Biol Evol       Date:  2017-12-01       Impact factor: 16.240

4.  863 genomes reveal the origin and domestication of chicken.

Authors:  Ming-Shan Wang; Mukesh Thakur; Min-Sheng Peng; Yu Jiang; Laurent Alain François Frantz; Ming Li; Jin-Jin Zhang; Sheng Wang; Joris Peters; Newton Otieno Otecko; Chatmongkon Suwannapoom; Xing Guo; Zhu-Qing Zheng; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Hidayat Ashari; Sri Suladari; Moch Syamsul Arifin Zein; Szilvia Kusza; Saeed Sohrabi; Hamed Kharrati-Koopaee; Quan-Kuan Shen; Lin Zeng; Min-Min Yang; Ya-Jiang Wu; Xing-Yan Yang; Xue-Mei Lu; Xin-Zheng Jia; Qing-Hua Nie; Susan Joy Lamont; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasige; Shao-Hong Feng; Jing-Fang Si; Hao Zhang; Jie-Qiong Jin; Ming-Li Li; Yan-Hu Liu; Hong-Man Chen; Cheng Ma; Shan-Shan Dai; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Thi-Thuy Le; Okeyo Ally Mwai; Mohamed Nawaz Mohamed Ibrahim; Megan Supple; Beth Shapiro; Olivier Hanotte; Guojie Zhang; Greger Larson; Jian-Lin Han; Dong-Dong Wu; Ya-Ping Zhang
Journal:  Cell Res       Date:  2020-06-25       Impact factor: 25.617

5.  Large-scale genomic analysis reveals the genetic cost of chicken domestication.

Authors:  Ming-Shan Wang; Jin-Jin Zhang; Xing Guo; Ming Li; Rachel Meyer; Hidayat Ashari; Zhu-Qing Zheng; Sheng Wang; Min-Sheng Peng; Yu Jiang; Mukesh Thakur; Chatmongkon Suwannapoom; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Moch Syamsul Arifin Zein; Szilvia Kusza; Hamed Kharrati-Koopaee; Lin Zeng; Yun-Mei Wang; Ting-Ting Yin; Min-Min Yang; Ming-Li Li; Xue-Mei Lu; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasig; Shao-Hong Feng; Hao Zhang; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Le Thi Thuy; Okeyo A Mwai; Mohamed Nawaz Mohamed Ibrahim; Guojie Zhang; Kai-Xing Qu; Olivier Hanotte; Beth Shapiro; Mirte Bosse; Dong-Dong Wu; Jian-Lin Han; Ya-Ping Zhang
Journal:  BMC Biol       Date:  2021-06-16       Impact factor: 7.431

  5 in total

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