Zhi-Teng Chen1. 1. School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang 212004, China Jiangsu University of Science and Technology Zhenjiang China.
Abstract
The phylogenetic position and inner relationships of Dermaptera remain unresolved despite the numerous efforts using morphological and molecular data. To facilitate the resolution of problems, this study sequenced the complete mitogenome of Apachyusfeae de Bormans, 1894 (Apachyidae) and the nearly complete mitogenome of Diplatysflavicollis Shiraki, 1907 (Diplatyidae). The 19,029-bp long mitogenome of A.feae exhibited an extra trnV gene and two control regions in addition to the typical set of 37 genes including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. The 12,950-bp long partially sequenced mitogenome of D.flavicollis was composed of 10 and a partial fragment of PCGs, 18 tRNA genes, two rRNA genes, and a control region. Comparative analysis of available earwig mitogenomes revealed variable mitogenomic structure and extensive gene rearrangements in Dermaptera. The preliminary phylogenetic analyses using Bayesian inference and maximum likelihood methods showed identical results, but the limited sampling and different types of molecular data lead to an apparent incongruence with previous phylogenetic studies. Zhi-Teng Chen.
The phylogenetic position and inner relationships of Dermaptera remain unresolved despite the numerous efforts using morphological and molecular data. To facilitate the resolution of problems, this study sequenced the complete mitogenome of Apachyusfeae de Bormans, 1894 (Apachyidae) and the nearly complete mitogenome of Diplatysflavicollis Shiraki, 1907 (Diplatyidae). The 19,029-bp long mitogenome of A.feae exhibited an extra trnV gene and two control regions in addition to the typical set of 37 genes including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. The 12,950-bp long partially sequenced mitogenome of D.flavicollis was composed of 10 and a partial fragment of PCGs, 18 tRNA genes, two rRNA genes, and a control region. Comparative analysis of available earwig mitogenomes revealed variable mitogenomic structure and extensive gene rearrangements in Dermaptera. The preliminary phylogenetic analyses using Bayesian inference and maximum likelihood methods showed identical results, but the limited sampling and different types of molecular data lead to an apparent incongruence with previous phylogenetic studies. Zhi-Teng Chen.
(earwigs) are a small group of ancient insects in , with more than 1900 extant species within 11 families known worldwide (Haas 2018). The characteristics such as forceps‐like, unsegmented cerci in the adults of this group are functional in predation, defense, wingfolding and mating (Haas et al. 2000). Most earwigs are free-living and commonly found in damp areas feeding on plant materials, spores, fungi, or insects (Haas 2018). With the exception of and , these two families are distinctly epizoic and live non‐parasitically on cavernicolous bats and hamster rats, respectively (Nakata and Maa 1974; Haas and Gorb 2004). The majority of earwigs are oviparous, whereas the epizoic groups are viviparous, i.e., directly giving birth to nymphs. Besides, unusual maternal care behavior is found in all studied earwig species, with the female protecting eggs and first‐instar nymphs (Suzuki et al. 2005; Staerkle and Koelliker 2008).The extant is traditionally divided into three suborders, i.e., , , and (Gullan and Cranston 2010). and are sometimes considered to be derived members of (nonparasitic ) in several studies (Popham 1985; Klass 2001; Engel and Haas 2007). The most recent reclassification of was established by Engel and Haas (2007), which included all extant earwigs in the suborder . and are recognized as two infraorders in , and comprises the two epizoic families.The phylogenetic position of in and the inner relationship within remain controversial (Beutel et al. 2013). Different research using morphological characteristics or molecular data from nuclear and mitochondrial genes generated different phylogenies of (Wan et al. 2012; Naegle et al. 2016). Wan et al. (2012) sequenced and analyzed the first earwig mitochondrial genome (mitogenome) and investigated the phylogeny of . To date, Burr, 1904 and Matzke & Kocarek, 2015 are the only two complete earwig mitogenomes available in GenBank, and only the mitogenomic structure of has been analyzed (Wan et al. 2012). To better resolve the phylogeny of earwigs using mitogenomic data, this study sequenced and analyzed two new mitogenomes for . A preliminary phylogenetic tree of is constructed based on the newly sequenced and the known mitogenomic data to provide a basic topology for the relationships among families.
Materials and methods
Sample preparation and DNA extraction
The specimen of de Bormans, 1894 was collected from Laibin, Guangxi Province of China () in October of 2019; the specimen of Shiraki, 1907 was collected from Jurong, Jiangsu Province of China () in February of 2020. The specimens were identified by the author, preserved in 100% ethanol, and stored in the Insect Collection of Jiangsu University of Science and Technology (). The total genomic DNA of the two earwigs was isolated using the E.Z.N.A. Tissue DNA Kit (Omega Bio-Tek, Inc.) and preserved at −20 °C before the sequencing process.
Sequencing, assembly, annotation, and analysis
The Illumina TruSeq short-insert libraries (size = 450 bp) were constructed using 1 μg of purified DNA fragments and were sequenced by Illumina Hiseq 4000 (Shanghai Biozeron Biotechnology Co., Ltd). Raw reads were filtered prior to assembly; high-quality reads were retained and assembled into contigs by SOAPdenovo2.04 (Luo et al. 2012). The assembled contigs were then aligned to the reference mitogenomes of using BLAST. Subsequently, the aligned contigs (≥80% similarity and query coverage) were arranged according to the reference mitogenomes. Finally, the clean reads were mapped to the assembled draft mitogenomes to fix the wrong bases; gaps were filled using GapFiller v. 2.1.1 (https://sourceforge.net/projects/gapfiller/). The mitogenome sequences of and were deposited in GenBank under the accession numbers MW291948 and MW291949, respectively. Mitochondrial gene analyses of and were compared to four additional species of with available mitogenomes (Table 1). The gene order was compared with Burla, 1954, which was considered to possess the ancestral arthropod mitochondrial gene arrangement (Clary and Wolstenholme 1985).
Table 1.
List of species used in this study.
Infraorder
Parvorder
Family
Species
Length (bp)
A+T%
Accession number
Protodermaptera
Diplatyidae
*Diplatysflavicollis
12,950
73.5
MW291949
Pygidicranidae
Challiafletcheri
20,456
72.6
NC_018538
Epidermaptera
Paradermaptera
Apachyidae
Apachyusfeae
19,029
61.2
MW291948
Metadermaptera
Anisolabididae
Euborelliaarcanum
16,087
68.3
KX673196
Eteodermaptera
Forficulidae
*Eudohrniametallica
16,324
58.7
KX091853
*Paratimomenusflavocapitatus
15,677
67.4
KX091861
Outgroup
Outgroup
Outgroup
Kamimuriachungnanshana
—
—
NC_028076
* Incomplete mitogenomes.
List of species used in this study.* Incomplete mitogenomes.All protein-coding genes () and ribosomal RNA () genes were identified by homology alignments. Gene boundaries of each PCG were further confirmed by ORF finder (https://www.ncbi.nlm.nih.gov/orffinder/). All transfer RNA () genes were predicted and illustrated by the MITOS online server (Bernt et al. 2013). The visual structure of the mitogenomes were depicted using CGView Server (http://stothard.afns.ualberta.ca/cgview_server/) (Grant and Stothard 2008). Nucleotide composition of each gene and codon usage of PCGs were calculated using MEGA v. 6.0 (Tamura et al. 2013). The composition skew values were calculated by AT-skew = [A – T] / [A + T] and GC-skew = [G – C] / [G + C] formulas (Perna and Kocher 1995). The synonymous substitution rate (Ks) and nonsynonymous substitution rate (Ka) were computed by DnaSP v. 5.10 (Librado and Rozas 2009). Presumed secondary structures in the control regions were predicted by the online tool Tandem Repeats Finder (http://tandem.bu.edu/trf/trf.advanced.submit.html), DNAMAN v. 6.0.3 and ARWEN (http://mbio-serv2.mbioekol.lu.se/ARWEN/) (Laslett and Canbäck 2008).
Phylogenetic analysis
Nucleotide sequences of PCGs derived from six species of , including and sequenced in this study, were used in the phylogenetic analysis (Table 1). The stonefly Wu, 1938 (, ; GenBank accession no. NC_028076) was used as the outgroup. The 13 PCGs were respectively aligned by MAFFT and concatenated as a combined dataset using SequenceMatrix v. 1.7.8 (Katoh and Standley 2013). The optimal nucleotide substitution models and partitioning schemes for the dataset was determined by PartitionFinder v. 2.1.1 using the Bayesian Information Criterion (BIC) and a greedy search algorithm (Lanfear et al. 2016). Bayesian inferences (BI) and Maximum likelihood (ML) analyses were conducted with the optimal partition schemes. The BI analysis was conducted by MrBayes v. 3.2.7, with 20 million generations sampling every 1000 generations, running one cold chain and three hot chains with a burn-in of 25% trees (Ronquist and Huelsenbeck 2003). TRACER v. 1.5 was used to examine the stability of the results of the BI analysis. The ML analysis was performed by RAxML v. 8.2.12 with 1000 bootstrap replicates (Stamatakis 2014). FigTree v. 1.4.2 was used to adjust and visualize the tree files generated by both BI and ML inferences.
Results
Mitogenome annotation and nucleotide composition
The complete mitogenome of is a typical double-strand circular molecule with a length of 19,029 bp (Fig. 1). The obtained partial mitogenome of is 12,950 bp in length (Fig. 1). The completely sequenced three mitogenomes of range in size from 16,087 bp in to 20,456 bp in . In the mitogenome of , an extra trnV gene and two control regions are found in addition to the standard set of 37 genes (13 PCGs, 22 tRNA genes and two rRNA genes) (Table 2). In the partial mitogenome of , 10 and a partial fragment of PCGs, 18 tRNA genes, two rRNA genes, and a control region are annotated (Table 3). In , there are 56 overlapping nucleotides located in three pairs of neighboring genes, and the longest overlap is 41-bp long and located between trnT and ND4L (Table 2). A total of 296 intergenic nucleotides (IGNs) are dispersed in 19 locations for . In , 17 overlapping nucleotides and 504 IGNs are found, including a 227-bp long IGN between trnS2 (UCN) and ND1 (Table 3).
Figure 1.
Mitochondrial maps of and . Genes outside the map are transcribed clockwise, whereas those inside the map are transcribed counterclockwise. Names and other details of the genes are listed in Tables 2 and 3. The inside circles show the GC content and the GC skew. GC content and GC skew are plotted as the deviation from the average value of the entire sequence.
Table 2.
Mitochondrial genome structure of .
Gene
Position (bp)
Size (bp)
Direction
Intergenic nucleotides
Anti- or start/stop codons
A+T%
trnIle (I)
1–62
62
Forward
0
GAT
64.5
trnGln (Q)
171–240
70
Reverse
108
TTG
65.7
trnMet (M)
257–326
70
Forward
16
CAT
61.4
ND2
328–1347
1020
Forward
1
ATT/TAA
62.3
trnTrp (W)
1350–1415
66
Forward
2
TCA
63.6
trnCys (C)
1408–1474
67
Reverse
−8
GCA
62.7
trnTyr (Y)
1476–1539
64
Reverse
1
GTA
67.2
COX1
1540–3075
1536
Forward
0
ATG/TAG
58.1
trnL2 (UUR)
3081–3147
67
Forward
5
TAA
62.7
COX2
3148–3831
684
Forward
0
ATG/TAG
58.0
trnLys (K)
3832–3901
70
Forward
0
CTT
61.4
trnAsp (D)
3903–3971
69
Forward
1
GTC
79.7
ATP8
3972–4133
162
Forward
0
GTG/TAG
57.4
ATP6
4127–4807
681
Forward
−7
ATG/TAG
58.1
COX3
4813–5607
795
Forward
5
TTG/TAA
56.7
trnGly (G)
5620–5680
61
Forward
12
TCC
78.7
ND3
5681–6034
354
Forward
0
ATG/TAG
56.8
trnAla (A)
6036–6099
64
Forward
1
TGC
45.3
trnVal2 (GUU)
6109–6168
60
Reverse
9
AAC
60.0
trnGlu (E)
6177–6238
62
Forward
8
TTC
74.2
trnArg (R)
6241–6301
61
Forward
2
TCG
68.9
trnSer1 (AGN)
6303–6363
61
Forward
1
GCT
70.5
trnAsn (N)
6385–6448
64
Reverse
21
GTT
58.5
trnPhe (F)
6533–6598
66
Forward
84
GAA
77.3
ND5
6599–8347
1749
Reverse
0
ATG/TAA
57.5
trnHis (H)
8348–8414
67
Reverse
0
GTG
61.2
ND4
8415–9795
1381
Reverse
0
ATG/T−
59.9
ND4L
9755–10045
291
Reverse
−41
ATG/TAA
60.8
trnThr (T)
10,053–10,115
63
Forward
7
TGT
73.0
trnPro (P)
10,116–10,179
64
Reverse
0
TGG
64.1
ND6
10,182–10,730
549
Forward
2
ATT/TAA
62.8
CYTB
10,741–11,818
1078
Forward
10
ATT/T–
58.2
trnSer2 (UCN)
11,819–11,887
69
Forward
0
TGA
73.9
CR2
11,888–15,172
3285
Forward
0
—
59.5
ND1
15,173–16,120
948
Reverse
0
ATG/TAG
62.3
trnLeu1 (CUN)
16,121–16,187
67
Reverse
0
TAG
70.1
rrnL
16,188–17,467
1280
Reverse
0
—
67.9
trnV1 (GUA)
17,468–17,534
67
Reverse
0
TAC
67.2
rrnS
17,535–18,273
739
Reverse
0
—
66.0
CR1
18,274–19,029
756
Forward
0
—
74.2
Table 3.
Mitochondrial genome structure of .
Gene
Position (bp)
Size (bp)
Direction
Intergenic nucleotides
Anti- or start/stop codons
A+T%
COX1 (partial)
1–310
310
Forward
0
?/TAA
64.5
trnLys (K)
398–463
66
Forward
87
CTT
68.2
trnAsp (D)
464–532
69
Forward
0
GTC
87.0
ATP8
533–706
174
Forward
0
ATT/TAG
75.9
ATP6
700–1377
678
Forward
−7
ATG/TAA
72.5
COX3
1388–2200
813
Forward
10
ATT/TAA
68.5
trnGly (G)
2222–2286
65
Forward
21
TCC
75.4
ND3
2287–2637
351
Forward
0
ATT/TAA
74.3
trnAla (A)
2660–2724
65
Forward
22
TGC
77.6
trnAsn (N)
2736–2803
68
Forward
11
GTT
78.5
trnGlu (E)
2815–2879
65
Forward
11
TTC
77.5
trnTyr (Y)
2895–2969
75
Forward
15
GTA
80.0
trnCys (C)
2985–3051
67
Forward
15
GCA
79.7
trnGln (Q)
3059–3127
69
Forward
7
TTG
76.8
CR
3128–3719
592
Forward
0
—
82.6
trnSer1 (AGN)
3720–3784
65
Reverse
0
GCT
69.2
trnArg (R)
3785–3852
68
Reverse
0
TCG
78.3
trnPhe (F)
3854–3925
72
Reverse
1
GAA
90.5
ND5
3928–5673
1746
Reverse
2
ATC/TAA
71.5
trnHis (H)
5674–5739
66
Reverse
0
GTG
83.6
ND4
5747–7099
1353
Reverse
7
ATC/TAA
72.0
ND4L
7090–7386
297
Reverse
−10
ATT/TAA
74.3
trnThr (T)
7394–7464
71
Forward
7
TGT
74.6
trnPro (P)
7465–7537
73
Reverse
0
TGG
80.0
ND6
7540–8043
504
Forward
2
ATT/TAG
76.4
CYTB
8056–9198
1143
Forward
12
ATG/TAG
69.8
trnSer2 (UCN)
9246–9318
73
Forward
47
TGA
77.0
ND1
9546–10487
942
Reverse
227
ATT/TAA
69.9
trnLeu1 (CUN)
10,488–10,554
67
Reverse
0
TAG
79.1
rrnL
10,555–11,918
1364
Reverse
0
—
76.1
trnVal (V)
11,919–11,990
72
Reverse
0
TAC
72.2
rrnS
11,991–12,950
960
Reverse
0
—
76.9
Mitochondrial genome structure of .Mitochondrial genome structure of .Mitochondrial maps of and . Genes outside the map are transcribed clockwise, whereas those inside the map are transcribed counterclockwise. Names and other details of the genes are listed in Tables 2 and 3. The inside circles show the GC content and the GC skew. GC content and GC skew are plotted as the deviation from the average value of the entire sequence.The mitogenomes of and are biased toward A and T nucleotides (61.2% and 73.5%, respectively), which is consistent with other earwigs (Table 1). The A+T contents were also rich in each mitochondrial gene, showing the highest in trnD of and trnF of .
Gene rearrangement
In the sequenced earwigs, no PCG rearrangement are found (Fig. 2). In , most tRNA genes in the gene cluster trnA-R-N-S1-E-F are rearranged, and an extra trnV is present in the gene cluster. In , the gene cluster trnA-R-N-S1-E-F is also rearranged and incorporates trnY, trnC and trnQ from other locations. In , trnI, trnC, trnY, trnQ, and trnE are rearranged (Wan et al. 2012). In , trnQ, trnC, trnY, trnR, and trnS1 are rearranged, and trnY is lost. In and , both trnR and trnS1 are absent. These tRNA rearrangements mainly occur in the trnA-R-N-S1-E-F gene cluster. The two rRNA genes are located in the same location for all sequenced earwigs; however, they are variable in size interspecifically. In addition to the tRNA rearrangements, the control region of transfers to the new location between ND3 and ND5; an extra control region is also found in and (Wan et al. 2012).
Figure 2.
Mitochondrial gene arrangement of six earwigs in comparison with .
Mitochondrial gene arrangement of six earwigs in comparison with .
Protein-coding genes (PCGs)
All PCGs of are annotated, whereas ND2, COX2, and partial COX1 of are not sequenced. The PCGs of are similar in size to those of and other earwigs. Most PCGs of and all PCGs of utilize the standard ATN start codon (ATT, ATC, and ATG), whereas ATP8 and COX3 of start with special start codons (GTG and TTG, respectively) (Tables 2, 3). Most PCGs of and all PCGs of have the complete termination codon TAN (TAA or TAG), whereas ND4 and CYTB of end with an incomplete stop codon T (Tables 2, 3). The relative synonymous codon usage (RSCU) values were calculated for the six earwig mitogenomes (Fig. 3). The most frequently used codon is TCT (Ser) for , TTG (Leu) for , TTA (Leu) for , , , and .
Figure 3.
Relative synonymous codon usage (RSCU) of PCGs in six species of earwigs.
Relative synonymous codon usage (RSCU) of PCGs in six species of earwigs.The ratio of Ka/Ks was calculated for each PCG of the six earwig mitogenomes to evaluate the evolutionary rates of the PCGs (Fig. 4). The results showed that COX1 of has the highest evolutionary rate, followed by ND5 of and ND2 of , whereas COX1 of and appear to be the lowest. The genes with ratios of Ka/Ks above 1 are evolving under positive selection. Other genes with ratios of Ka/Ks below 1 are expected to evolve under purifying selection.
Figure 4.
Evolutionary rates of PCGs in six species of earwigs. The bar indicates each gene’s Ka/Ks value.
Evolutionary rates of PCGs in six species of earwigs. The bar indicates each gene’s Ka/Ks value.
Transfer RNA (tRNA) genes
The typical set of 22 tRNA genes and an extra trnV gene are detected in the mitogenome of (Fig. 5). In , 18 tRNA genes are recognized and the four tRNA genes trnI, trnM, trnW, trnL are absent due to the incomplete sequencing of 5´ end (Fig. 6). In other sequenced earwigs, has all 22 tRNA genes (Wan et al. 2012), lacks trnY, and and lack trnR and trnS1. Individual tRNA gene of the two newly sequenced mitogenomes range in size from 60 to 75 bp; the longest tRNA gene is trnY in , and the shortest tRNA gene is the extra trnV in . In the mitogenomes of and , most of the tRNA genes exhibit cloverleaf secondary structures, but the dihydrouridine (DHU) arm is lost for the extra trnV of and is reduced for trnS1 of both species. The anticodons of the tRNA genes were identical among the earwigs. In the tRNA genes of and , a total of 48 and 25 mismatched base pairs are respectively recognized and all of them are G-U pairs.
Figure 5.
Secondary structures of tRNA genes in the mitogenome of Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.
Figure 6.
Secondary structures of tRNA genes in the mitogenome of Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.
Secondary structures of tRNA genes in the mitogenome of Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.Secondary structures of tRNA genes in the mitogenome of Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.
Ribosomal RNA (rRNA) genes
Two rRNA genes are consistently found in all sequenced mitogenomes. Locations of the two rRNA genes are conserved among earwig species and similar to , but the lengths are variable. In , the large ribosomal RNA (rrnL) gene is 1280 bp in length with an A+T content of 67.9%; the small ribosomal RNA (rrnS) gene is 739 bp with an A+T content of 66.0%. In , the rrnL gene is 1364 bp with an A+T content of 76.1%; the rrnS gene is 960 bp with an A+T content of 76.9%.
Control region
Two putative control regions (CRs) are found in the mitogenomes of , and . The CR1 of is 756 bp and located after rrnS, containing a stem-loop (SL) structure and a poly-[TA]n like stretch (Fig. 7). The CR2 of is 3285-bp long and located between trnS2 (UCN) and ND1, being composed of five SL structures and three copies of tandem repeats. The CR of is 592 bp and located between trnQ and trnS1, comprising two and partial copies of tandem repeats, two tRNA-like structures, and a poly-[T]n stretch (Fig. 8). In , the 1816-bp long CR1 contains a SL structure and two regions of tandem repeats; the entire 2856-bp long CR2 comprises 21.1 copies of tandem repeats (Fig. 9). The CR of is 686 bp in size, containing a SL structure, a poly-[TA]n stretch and a tandem repeats region (Fig. 9). The 891-bp long CR of comprises four SL structures (Fig. 9). The CR of is short, 227-bp in size, and contains one SL structure (Fig. 9).
Figure 7.
Predicted structural elements in the control regions of .
Figure 8.
Predicted structural elements in the control region of .
Figure 9.
Predicted structural elements in the control regions of , , , and .
Predicted structural elements in the control regions of .Predicted structural elements in the control region of .Predicted structural elements in the control regions of , , , and .
Phylogenetic analyses
The phylogenetic analyses use the nucleotide sequences of six available earwig mitogenomes to investigate the mitochondrial phylogenetic relationships within . The two phylogenetic trees using BI and ML analyses generated identical topological structures for (Fig. 10). The monophyly of is supported with high values. is recovered as the sister group of and their combined clade is grouped with . is supported as the sister group to other sequenced families. Monophyly of the two infraorders and cannot be supported by either analysis. The three parvorders Paradermaptera, Metadermaptera, and Eteodermaptera are each represented by single family and their relationship was recovered as Paradermaptera + (Eteodermaptera + Metadermaptera).
Figure 10.
Phylogenetic relationships within inferred by Bayesian inference and maximum likelihood analysis. Numbers at the nodes are posterior probabilities (left) and bootstrap values (right). The family names are listed after the species. Infraorders and parvorders are indicated below each family name.
Phylogenetic relationships within inferred by Bayesian inference and maximum likelihood analysis. Numbers at the nodes are posterior probabilities (left) and bootstrap values (right). The family names are listed after the species. Infraorders and parvorders are indicated below each family name.
Discussion
This study sequenced and comparatively analyzed two earwig mitogenomes with other available public data. The mitogenomes of and were slightly smaller in size than that of (20,456 bp) (Wan et al. 2012). Unlike most other insects (Wei et al. 2010), the mitogenome has both negative AT-skew and GC-skew values as in and , whereas exhibits negative AT-skew and positive GC-skew values as in (Wan et al. 2012) and . The number of mitochondrial genes and control regions were variable in , either with the addition or loss of several tRNA genes. In other four completely or partially sequenced mitogenomes of , the presence of typical 37 genes and two elongated control regions is found in (Wan et al. 2012), the lack of trnY is found in , and the absence of trnR and trnS1 (AGN) occurs in both and . The presence of an elongated control region or an extra control region is temporarily considered a common phenomenon in earwig mitogenomes. The elongated non-coding regions in (as found in and ) could contribute to the frequently large mitogenomic size (Wan et al. 2012), which is also common in other insect orders, such as in (Chen and Du 2017). Multiple IGNs were present in all available mitogenomes of , indicating a loose mitogenomic structure for the earwigs. No PCG rearrangements were found in all sequenced earwigs (Fig. 2). The PCGs and rRNA genes of seemed conserved in arrangements, but this should be confirmed by more mitogenomic data. Rearrangement of tRNA genes were detected in all sequenced earwig species (Fig. 2). The rearrangements concerning tRNA genes occur very frequently in the sequenced earwigs and mainly focus on the trnA-R-N-S1-E-F gene cluster, which is similar to the arrangement in (Cao et al. 2012; Gong et al. 2012; Wang et al. 2014; Park et al. 2016). Extensive mitochondrial rearrangement events are expected to occur in other unsequenced earwigs.The Ka/Ks calculation revealed the fast-evolving COX1 and slow-evolving CYTB in earwigs. The fast-evolving genes are potential candidates as molecular markers for future genetic studies of . Among the very few molecular studies of , Naegle et al. (2016), Stuart et al. (2019), and Kirstová et al. (2020) supported the efficiency of COX1 gene in species delimitation and phylogenetic reconstruction. In tRNA genes, reductions of trnS1 DHU arms was very common in other metazoans (Garey and Wolstenholme 1989). The shortened DHU arm of trnS1 found in and was also found in but absent in other earwigs (Wan et al. 2012).The control regions of were highly variable in size, location, and secondary structures. The putative structural elements in the CRs included SL structure, poly-[TA]n like stretch, tandem repeats, tRNA-like structure and poly-[T]n stretch, and they were highly variable in both size and numbers, which implied that the earwig mitogenomes are likely to be regulated in apparent different ways during the mitogenomic replication and transcription processes.In the phylogenetic analyses, the monophyly of was supported with high values The basal phylogenetic position of was also recovered based on nuclear single-copy genes (Wipfler et al. 2020). However, the current relationship between the five earwig families is entirely incongruent with all previous phylogenetic studies using either morphological data, other types of molecular markers, or combined data (Haas 1995; Guillet and Vancassel 2001; Haas and Kukalova-Peck 2001; Colgan et al. 2003; Jarvis et al. 2005; Kocarek et al. 2013; Naegle et al. 2016; Wipfler et al. 2020). The preliminary phylogenetic analyses in current study included very few representatives from only five earwig families and thus insufficient for comparison with previous studies. The currently available mitogenomic data could not resolve the relationship within . More comprehensive sampling and sequencing work are necessary to clarify the mitogenomic features and mitogenomic phylogeny of .
Conclusions
The mitochondrial genomes of and were sequenced, analyzed, and compared with other sequenced earwigs. The phylogenetic reconstructions with BI and ML methods generated identical topology but differed from previous phylogenetic studies using morphological data or other molecular markers. Due to the limited sample size, the relationships found here must be treated with caution. More mitogenomes should be obtained in future works to resolve the phylogeny of earwigs.
Authors: Oliver P Stuart; Matthew Binns; Paul A Umina; Joanne Holloway; Dustin Severtson; Michael Nash; Thomas Heddle; Maarten van Helden; Ary A Hoffmann Journal: Insects Date: 2019-03-14 Impact factor: 2.769