| Literature DB >> 34805533 |
Hamid Reza Kouhpayeh1, Farhad Tabasi2,3, Mohammad Dehvari4, Mohammad Naderi1, Gholamreza Bahari5, Tahereh Khalili3, Courtney Clark6, Saeid Ghavami6, Mohsen Taheri4,7.
Abstract
BACKGROUND: The COVID-19 pandemic remains an emerging public health crisis with serious adverse effects. The disease is caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV--2) infection, targeting angiotensin-converting enzyme-2 (ACE2) receptor for cell entry. However, changes in the renin-angiotensin system (RAS) balance alter an individual's susceptibility to COVID-19 infection. We aimed to evaluate the association between AGT rs699 C > T, ACE rs4646994 I/D, and AGTR1 rs5186 C > A variants and the risk of COVID-19 infection and the severity in a sample of the southeast Iranian population.Entities:
Keywords: ACE; AGT; AGTR1; Angiotensin; COVID-19; Polymorphism; SARS-CoV-2
Year: 2021 PMID: 34805533 PMCID: PMC8596349 DOI: 10.1186/s41231-021-00106-0
Source DB: PubMed Journal: Transl Med Commun ISSN: 2396-832X
Primer sequence used for detection of ACE rs4646994, AGT rs699 and AGTR1 rs5186 gene polymorphisms
| Polymorphisms | Sequence (5`- > 3`) | Restriction Enzyme | Product size (bp) | Annealing temperature (°C) |
|---|---|---|---|---|
F: GCCCTGCAGGTGTCTGCAGCATGT R: GGATGGCTCTCCCCGCCTTGTCTC | – | I allele: 599 bp D allele: 312 bp | 66 | |
F: CCGTTTGTGCAGGGCCTGGCTCTCT R: CAGGGTGCTGTCCACACTGGACCCC | Tth111I | T allele: 165 C allele: 141 + 24 | 68 | |
F: AGAAGCCTGCACCATGTTTTGAG R: CCTGTTGCTCCTCTAACGATTTA | DdeI | A allele: 410 bp C allele: 292 + 118 | 60 |
Fig. 1Electrophoresis pattern of the PCR products for ACE rs4646994 indel polymorphism detection. M: DNA marker; Lanes 1, 6: ID; Lanes 2, 5: II; Lanes 3, 4: DD
Fig. 2Electrophoresis pattern of the PCR-RFLP products for AGT rs699 polymorphism detection. M: DNA marker; Lanes 1, 4: TC; Lanes 2, 3: TT
Fig. 3Electrophoresis pattern of the PCR-RFLP products for AGTR1 rs5186 polymorphism detection. M: DNA marker; Lanes 1, 4: AA; Lanes 2, 3: AC
Demographic characteristics of COVID-19 patients and control individuals
| Characteristics | Patients, n (%) | Control, n (%) | ||
|---|---|---|---|---|
| Male | 144 (55.8) | 132 (53.7) | 0.34* | |
| Female | 114 (44.2) | 114 (46.3) | ||
| Total | 258 (100) | 246 (100) | ||
| Mean (SD) | 50.23 (14.82) | 49.01 (14.95) | 0.39** | |
| Median (IQR) | 51.0 (23.0) | 48.5 (24.0) | ||
Analyzed by *χ2 and ** Mann-Whitney tests
Abbreviations: SEM standard error of mean, IQR interquartile range
Demographic and clinical characteristics of severe and non-severe patients
| Characteristics | Non-Severe, n(%) | Severe, n(%) | ||
|---|---|---|---|---|
| Male | 55 (51.9) | 89 (58.6) | 0.31* | |
| Female | 51 (48.1) | 63 (41.4) | ||
| Total | 106 (100) | 152 (100) | ||
| Mean (SD) | 45.69 (13.87) | 52.27 (14.82) | ||
| Median (IQR) | 46.0 (23.5) | 52 (23.0) | ||
| Yes | 8 (16.7) | 65 (43.9) | < | |
| No | 40 (83.3) | 83 (56.1) | ||
| Total | 48 (100) | 148 (100) | ||
| Yes | 10 (20.8) | 53 (35.3) | ||
| No | 38 (79.2) | 97 (64.7) | ||
| Total | 48 (100) | 150 (100) | ||
Analyzed by *χ2 and ** Mann-Whitney tests
Abbreviations: SEM standard error of mean, IQR interquartile range
Alleles and genotypes frequencies of ACE rs4646994, AGT rs699 and AGTR1 rs5186 polymorphisms in COVID-19 patients and control subjects
| Polymorphism | Group | Genotypes, n (%) | Allele, n (%) | HWE | ||||
|---|---|---|---|---|---|---|---|---|
| χ | ||||||||
| ACE rs4646994 | Patients | 144 (55.8) | 89 (34.5) | 25 (9.7) | 377 (73.6) | 139 (26.94) | 3.94 | 0.052 |
| Controls | 70 (28.7) | 123 (50.4) | 51 (20.9) | 263 (53.89) | 225 (46.11) | 0.05 | 0.90 | |
| AGT rs699 | Patients | 20 (9.2) | 197 (90.8) | – | 237 (54.61) | 197 (45.39) | 142.9 | < 0.001 |
| Controls | 113 (46.1) | 132 (53.9) | – | 358 (73.06) | 132 (26.94) | 33.3 | < 0.001 | |
| AGTR1 rs5186 | Patients | 154 (74.4) | 49 (23.7) | 4 (1.9) | 357 (86.81) | 57 (13.19) | 0.001 | > 0.99 |
| Controls | 185 (75.8) | 59 (24.2) | 0 | 429 (87.91) | 59 (12.09) | 4.61 | 0.031 | |
Abbreviation: HWE Hardy-Weinberg equilibrium
Genotypes and allele frequencies of ACE rs4646994, ATG rs699 and AGTR1 rs5186 polymorphisms in COVID-19 patients and controls
| Polymorphisms | Genetic Models | Patients, n (%) | Control, n (%) | Crude analysis | Adjusted analysis | ||
|---|---|---|---|---|---|---|---|
| 144 (55.8) | 70 (28.7) | 1.00 | – | 1.00 | – | ||
| 89 (34.5) | 123 (50.4) | ||||||
| 25 (9.7) | 51 (20.9) | ||||||
| 144 (55.8) | 70 (28.7) | 1.00 | – | 1.00 | – | ||
| 114 (44.2) | 174 (71.3) | ||||||
| 233 (90.3) | 193 (79.1) | 1.00 | – | 1.00 | – | ||
| 25 (9.7) | 51 (20.9) | ||||||
| 169 (65.5) | 121 (49.6) | 1.00 | – | 1.00 | – | ||
| 89 (34.5) | 123 (50.4) | 0.71 (0.47–1.06) | 0.058 | ||||
| 377 (73.6) | 263 (53.89) | 1.00 | – | 1.00 | – | ||
| 139 (26.94) | 225 (46.11) | ||||||
| 20 (9.2) | 113 (46.1) | 1.00 | – | ||||
| 197 (90.8) | 132 (53.9) | ||||||
| 237 (54.61) | 358 (73.06) | 1.00 | – | 1.00 | – | ||
| 197 (45.39) | 132 (26.94) | ||||||
| 154 (74.4) | 185 (75.8) | 1.00 | – | 1.00 | – | ||
| 49 (23.7) | 59 (24.2) | 0.99 (0.64–1.54) | 0.5 | 0.83 (0.51–1.36) | 0.28 | ||
| 4 (1.9) | 0 | – | – | – | – | ||
| 154 (74.4) | 185 (75.8) | 1.00 | – | 1.00 | – | ||
| 53 (25.6) | 59 (24.2) | 1.07 (0.70–1.65) | 0.40 | 0.90 (0.55–1.45) | 0.38 | ||
| 203 (98.1) | 244 (100) | 1.00 | – | 1.00 | – | ||
| 4 (1.9) | 0 | – | – | – | – | ||
| 158 (76.3) | 185 (75.8) | 1.00 | – | 1.00 | – | ||
| 49 (23.7) | 59 (24.2) | 0.97 (0.62–1.50) | 0.49 | 0.82 (0.50–1.33) | 0.24 | ||
| 357 (86.81) | 429 (87.91) | 1.00 | – | 1.00 | – | ||
| 57 (13.19) | 59 (12.09) | 1.10 (0.74–1.63) | 0.34 | 0.99 (0.64–1.52) | 0.52 | ||
aAdjusted for age and sex
Genotypes and allele frequencies of ACE rs4646994, ATG rs699 and AGTR1 rs5186 polymorphisms in non-severe and severe COVID-19 patients
| Polymorphisms | Genetic Models | Severe, n (%) | Non-severe, n (%) | Crude analysis | Adjusted analysis | ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | ||||||
| 84 (55.3) | 60 (56.6) | 1.00 | – | 1.00 | – | ||
| 58 (38.2) | 31 (29.2) | 1.33 (0.77–2.31) | 0.18 | 1.12 (0.57–2.21) | 0.42 | ||
| 10 (6.6) | 15 (14.2) | 0.47 (0.20–1.13) | 0.06 | 0.70 (0.14–3.45) | 0.49 | ||
| 84 (55.3) | 60 (56.6) | 1.00 | – | 1.00 | – | ||
| 68 (44.7) | 46 (43.4) | 1.05 (0.64–1.74) | 0.46 | 1.06 (0.55–2.05) | 0.48 | ||
| 142 (93.4) | 91 (85.8) | 1.00 | – | 1.00 | – | ||
| 10 (6.6) | 15 (14.2) | 0.66 (0.13–3.19) | 0.46 | ||||
| 94 (61.8) | 75 (70.8) | 1.00 | – | 1.00 | – | ||
| 58 (38.2) | 31 (29.2) | 1.49 (0.87–2.53) | 0.08 | 1.16 (0.59–2.25) | 0.39 | ||
| 226 (74.5) | 151 (75.0) | 1.00 | – | 1.00 | – | ||
| 78 (25.50) | 61 (25.0) | 0.85 (0.57–1.26) | 0.24 | 0.99 (0.58–1.68) | 0.54 | ||
| 8 (6.3) | 12 (13.3) | 1.00 | – | 1.00 | – | ||
| 119 (93.7) | 78 (86.7) | 2.28 (0.89–5.85) | 0.06 | 2.33 (0.75–7.14) | 0.11 | ||
| 135 (53.15) | 102 (56.67) | 1.00 | – | 1.00 | – | ||
| 119 (46.85) | 78 (43.44) | 1.15 (0.78–1.69) | 0.26 | 1.16 (0.70–1.90) | 0.31 | ||
| 96 (80.0) | 58 (66.7) | 1.00 | – | 1.00 | – | ||
| 23 (19.2) | 26 (29.9) | 0.53 (0.27–1.02) | 0.06 | 0.55 (0.24–1.25) | 0.11 | ||
| 1 (0.8%) | 3 (3.5) | 0.20 (0.02–1.98) | 0.16 | 0.30 (0.01–4.97) | 0.41 | ||
| 95 (80 | 58 (66.7) | 1.00 | – | 1.00 | – | ||
| 24 (20.0) | 19 (35.3) | 0.77 (0.38–1.52) | 0.28 | 0.53 (0.23–1.18) | 0.09 | ||
| 119 (99.2) | 84 (96.5) | 1.00 | – | 1.00 | – | ||
| 1 (0.8) | 3 (3.5) | 23 (0.02–2.30) | 0.20 | 0.34 (0.02–5.69) | 0.45 | ||
| 97 (80.8) | 61 (70.1) | 1.00 | – | 1.00 | – | ||
| 23 (19.2) | 26 (29.2) | 0.55 (0.29–1.06) | 0.052 | 0.56 (0.24–1.28) | 0.12 | ||
| 215 (89.58) | 142 (81.61) | 1.00 | – | ||||
| 25 (10.42) | 32 (18.39) | 0.56 (0.27–1.14) | 0.08 | ||||
aAdjusted for age, sex, hypertension and diabetes