Literature DB >> 35431460

Theory and Least Squares Fitting of CW ESR Saturation Spectra Using the MOMD Model.

Pranav Gupta1, Boris Dzikovski1,2, Jack H Freed1.   

Abstract

CW saturation experiments are widely used in ESR studies of relaxation processes in proteins and lipids. We develop the theory of saturation in ESR spectra in terms of its close relation with that of 2D-ELDOR. Our treatment of saturation is then based on the microscopic order macroscopic disorder (MOMD) model and can be used to fit the full CW saturation spectrum, rather than fitting just the peak-peak amplitude as a function of microwave field B 1 as is commonly done. This requires fewer experiments to yield effects on T 1, as well as provides a more extensive dynamic structural picture, for example, for scanning experiments on different protein sites. The code is released as a publicly available software package in Python that can be used to fit CW saturation spectra from biological samples of interest.

Entities:  

Year:  2021        PMID: 35431460      PMCID: PMC9012167          DOI: 10.1007/s00723-021-01390-7

Source DB:  PubMed          Journal:  Appl Magn Reson        ISSN: 0937-9347            Impact factor:   0.831


  11 in total

1.  DEER distance measurements on proteins.

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Journal:  Annu Rev Phys Chem       Date:  2012-01-30       Impact factor: 12.703

2.  Spinach--a software library for simulation of spin dynamics in large spin systems.

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Journal:  J Magn Reson       Date:  2010-11-17       Impact factor: 2.229

3.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

Authors:  Stefan Stoll; Arthur Schweiger
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

4.  Accessibility of nitroxide side chains: absolute Heisenberg exchange rates from power saturation EPR.

Authors:  Christian Altenbach; Wojciech Froncisz; Roy Hemker; Hassane McHaourab; Wayne L Hubbell
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

Review 5.  Magnetic resonance of membranes.

Authors:  P F Knowles; D Marsh
Journal:  Biochem J       Date:  1991-03-15       Impact factor: 3.857

6.  Fokker-Planck formalism in magnetic resonance simulations.

Authors:  Ilya Kuprov
Journal:  J Magn Reson       Date:  2016-07-13       Impact factor: 2.229

7.  Microsecond dynamics in proteins by two-dimensional ESR: Predictions.

Authors:  Pranav Gupta; Zhichun Liang; Jack H Freed
Journal:  J Chem Phys       Date:  2020-06-07       Impact factor: 3.488

8.  Conformational distributions and hydrogen bonding in gel and frozen lipid bilayers: a high frequency spin-label ESR study.

Authors:  Boris Dzikovski; Dmitriy Tipikin; Jack Freed
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

9.  Unique Structural Features of Membrane-Bound C-Terminal Domain Motifs Modulate Complexin Inhibitory Function.

Authors:  David Snead; Alex L Lai; Rachel T Wragg; Daniel A Parisotto; Trudy F Ramlall; Jeremy S Dittman; Jack H Freed; David Eliezer
Journal:  Front Mol Neurosci       Date:  2017-05-24       Impact factor: 5.639

10.  Interaction of Spin-Labeled Lipid Membranes with Transition Metal Ions.

Authors:  Boris Dzikovski; Vsevolod Livshits; Jack Freed
Journal:  J Phys Chem B       Date:  2015-10-13       Impact factor: 2.991

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