| Literature DB >> 35430817 |
Patryk Borowski1, Sylwia E Kutniewska1, Radosław Kamiński1, Adam Krówczyński1, Dominik Schaniel2, Katarzyna N Jarzembska1.
Abstract
Two photoswitchable nickel(II) nitro coordination compounds and their copper(II) analogues are reported. In all these systems, the metal center is chelated by (N,N,O)-donor ligands containing either 2-picolylamine or 8-aminoquinoline fragments. The studied compounds were thoroughly investigated using crystallographic and spectroscopic techniques supplemented by computational analysis. They are easy to synthesize and stable, and all compounds undergo the nitro group isomerization reaction. Nevertheless, there are significant differences between the copper and nickel systems regarding their structural and switchable properties. According to the solid-state IR spectroscopy results, 400-660 nm light irradiation of the ground-state (η2-O,O')-κ-nitrito copper(II) complexes at 10 K induces a rather moderate conversion to a metastable linkage isomer, which is visible only up to approximately 60-80 K. In turn, upon visible light irradiation (ca. 530 nm excitation wavelength), the ground-state nitro isomers of the examined nickel(II) complexes transform into the endo-nitrito forms. It was possible to achieve about 35% conversion for both nickel(II) systems and to determine the resulting crystal structures at 160 K in the case of single crystals after 30-45 min of exposure to LED light (crystals decayed with longer irradiation), and roughly 95% conversion was achieved for thin-film samples as indicated by the IR spectroscopy results. Traces of the endo-nitrito linkage isomers remained up to 200-220 K, and the isomerization reaction was proven to be fully reversible.Entities:
Year: 2022 PMID: 35430817 PMCID: PMC9066408 DOI: 10.1021/acs.inorgchem.2c00526
Source DB: PubMed Journal: Inorg Chem ISSN: 0020-1669 Impact factor: 5.436
Scheme 1Schematic Representation of the Studied Nickel(II) and Copper(II) Complexes (M = Cu or Ni)
Selected Crystal Structure Parameters for All Studied Complexesa
| compound | |||||
|---|---|---|---|---|---|
| moiety formula | C16H15N3Ni1O3 | C19H15N3Ni1O3 | C19H15N3Ni1O3 | C16H15N3Cu1O3 | C19H15N3Cu1O3 |
| moiety formula mass, | 356.00 | 392.04 | 392.04 | 360.86 | 396.89 |
| crystal system | triclinic | monoclinic | triclinic | triclinic | triclinic |
| space group | |||||
| 2 | 4 | 4 | 2 | 2 | |
| 368 | 808 | 808 | 370 | 406 | |
| crystal color and shape | orange plate | brown plate | brown plate | brown plate | green plate |
| 100 | 290 | 160 | 100 | 100 | |
| 7.4023(7) | 14.1406(7) | 14.1083(10) | 8.435(2) | 6.804(2) | |
| 8.1523(7) | 6.8044(3) | 6.7505(3) | 9.513(2) | 9.088(2) | |
| 13.6139(12) | 17.9675(7) | 17.8681(8) | 10.739(2) | 13.866(3) | |
| α (°) | 100.305(7) | 90 | 88.724(3) | 69.07(3) | 75.87(3) |
| β (°) | 101.078(8) | 103.816(4) | 104.156(5) | 69.65(3) | 83.43(3) |
| γ (°) | 102.856(8) | 90 | 94.061(4) | 72.48(3) | 84.76(3) |
| 764.64(13) | 1678.78(13) | 1645.88(16) | 739.0(3) | 824.2(4) | |
| 1.5462 | 1.5511 | 1.5821 | 1.6216 | 1.5992 | |
| 5.07% | 4.36% | 11.73% | 3.33% | 5.46% | |
| 8.09% | 6.54% | 17.23% | 3.60% | 6.43% | |
| ϱresmin/max (e·Å–3) | –0.47/+0.65 | –0.53/+0.42 | –1.15/+3.36 | –0.38/+0.48 | –0.78/+0.98 |
| CCDC code | 2110815 | 2110827 | 2110828 | 2110808 | 2110809 |
For more details, see the Supporting Information.
From the Ni-2a-100 K-dark-cooling-xtal-1 data set.
From the Ni-2b-RT-dark-xtal-2 data set.
From the Ni-2b-160 K-dark-xtal-2 data set.
Figure 1Molecular structures of all studied compounds derived from the X-ray diffraction data collected in complete darkness. Atomic thermal motion is represented as ellipsoids at the 50% probability level, selected hydrogen atoms are omitted for clarity, and the disorder is shown as a semitransparent fragment. For the Ni-2a complex, only the nitro isomer is labeled for clarity; for the Ni-2b complex, the atom labeling is shown for the low-temperature triclinic structure (the labeling of the high-temperature monoclinic structure follows that of the molecule A).
endo-Nitrito Isomer Populations (P) and Reaction-Cavity Volumes (Vcav) per Complex Molecule Calculated for the Ni-2a Crystal Structure during Cooling and Heating Experimentsa
| cooling | 290 | 0.0 | 42.4 |
| 240 | 0.0 | 41.0 | |
| 200 | 0.0 | 39.8 | |
| 160 | 8(1) | 40.0 | |
| 140 | 11(1) | 40.1 | |
| 120 | 11(1) | 38.0 | |
| 100 | 8(1) | 38.4 | |
| heating | 120 | 12(1) | 38.1 |
| 140 | 11(1) | 39.3 | |
| 160 | 12(1) | 40.7 | |
| 180 | 10(1) | 40.0 | |
| 200 | 0.0 | 40.3 |
Cavity volumes were computed with the MERCURY program[74] (probe radius of 1.2 Å and grid spacing of 0.1 Å). Note that the standard deviation on Vcav was estimated to be ca. 0.5 Å3.[16]
Figure 2Overlay of selected experimental molecular geometries taken from (a) the crystal structures of Ni-2a at 100 K (green) and Cu-2a at 100 K (red) and (b) the crystal structures of Ni-2b at 290 K (green) and Cu-2b at 100 K (red). Hydrogen atoms and the disorder of the nitro group in the crystal structure of Ni-2a have been omitted for clarity. The N2, N3, O3, and metal atoms were superimposed using the least-squares procedure implemented in the MERCURY program.
Figure 3Schematic representation of the ladder-like patterns in the crystal structures of (a) Ni-2b (viewed along the z-axis), (b) Cu-2b (viewed along the y-axis), and (c) Cu-2a (viewed along the x-axis).
Figure 4Main structural motifs encountered in the Ni-2a and Ni-2b crystal structures (for clarity, only the nitro isomer is shown).
Figure 6Main structural motifs encountered in the Cu-2a and Cu-2b crystal structures.
Selected Dimeric Motifs Present in the Examined Crystal Structures: Geometrical Parameters and Interaction Energy Values (Eint)a
| motif | selected
interactions | θD–H···A (°) | motif | selected
interactions | θD–H···A (°) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| –61.0 | C1–H1···O1a1 | 2.55 | 3.196(5) | 124.65 | –39.6 | C2–H2···O4 | 2.74 | 3.233(12) | 112.70 | ||
| C2–H2···O1a# | 2.66 | 3.237(6) | 118.93 | C2′–H2′···O2 | 2.64 | 3.139(15) | 112.80 | ||||
| –22.8 | C7–H7···O2a2 | 2.55 | 3.180(6) | 122.97 | –44.9 | C13–H13···O3′ 6 | 2.73 | 3.575(13) | 146.41 | ||
| –46.4 | C14–H14···O1a3 | 2.60 | 4.059(7) | 156.88 | C15–H15···O46 | 2.76 | 3.586(18) | 143.92 | |||
| C11(π)···C14(π)3 | 3.838(7) | –44.6 | C13′–H13′···O37 | 2.90 | 3.638(16) | 134.86 | |||||
| –126.0 | C4–H4···O1a4 | 2.70 | 3.143(6) | 108.70 | C15′–H15′···O27 | 2.55 | 3.414(18) | 148.91 | |||
| C6–H6b···O1a4 | 2.39 | 3.265(5) | 151.32 | –95.1 | C5(π)···C6(π)8 | 3.362(12) | |||||
| C1(π)···C1(π)4 | 3.561 | –94.8 | C5′(π)···C6′(π)8 | 3.373(12) | |||||||
| –136.8 | C6–H6a···O2a5 | 2.54 | 3.315(6) | 137.36 | |||||||
| C1(π)···C8(π)5 | 3.561(6) | ||||||||||
Calculated at the DFT(B3LYP)/6-311++G** level of theory with the Grimme dispersion correction applied. Geometries with the X–H neutron-normalized distances were used for computations.
From the Ni-2a-100 K-dark-cooling-xtal-1 data set.
From the Ni-2b-160 K-dark-xtal-2 data set.
The A–B dimers are referred to with the base symbols, while the respective B–A dimers are referred to with the primed symbols.
It should be noted that the given interaction energy values describe the total interaction between the two molecules comprising the structural motif, i.e., they include not only the presented hydrogen-bond(-like) contacts but also some other weak interactions that stabilize the system.
Values for homodimers consisting of both molecules in the nitro form.
Values for homodimers consisting of both molecules in the endo-nitro form.
The same motif consisting of two MS (metastable state) linkage isomers, though in this case the C7–H7···O2a interaction is not present.
H···H contact.
The Cu–O coordination bond length. Symmetry operations are indicated as superscripts and defined as follows: (1) −x + 2, −y + 3, −z + 1; (2) x, y – 1, z; (3) −x + 1, −y + 2, −z; (4) −x + 2, −y + 2, −z + 1; (5) −x + 1, −y + 2, −z + 1; (6) x + 1, y + 1, z; (7) x + 1, y, z; (8) −x + 1, −y + 1, −z + 1; (9) x – 1, y, z; (10) −x + 1, −y + 1, −z; (11) −x, −y + 1, −z; (12) −x, −y + 2, −z + 1; (13) −x, −y + 1, −z + 1; and (14) x, y, z – 1.
Figure 5Hirshfeld surface fingerprint plots[75] generated for both the 160 K Ni-2b crystal structure for molecules A (left panel) and B (middle panel) and the RT Ni-2b crystal structure (right panel). Plots were generated using the CRYSTALEXPLORER software.[76]
Reaction-Cavity Volumes (Vcav) per Complex Molecule Calculated for the Ground-State Crystal Structuresa
| compound | |
|---|---|
| 38.4 | |
| 27.7 | |
| 37.1 | |
| 33.6 |
Computed with the MERCURY program (probe radius of 1.2 Å and grid spacing of 0.1 Å). Note that the standard deviation on Vcav was estimated to be ca. 0.5 Å.[16]
Data were collected at 100 K.
Symmetry-independent molecule A (data were collected at 160 K).
Symmetry-independent molecule B (data were collected at 160 K).
Data were collected at room temperature (only one molecule in the ASU).
Figure 7IR absorption spectra for all studied complexes in the solid state. Black lines denote the ground-state spectra, while red lines denote spectra recorded after 10 min of LED irradiation. For more information and difference spectra, see the Supporting Information.
Optimal Isomerization Reaction Conditions for the Studied Systems in the Solid State Based On the IR Spectroscopy Resultsa
| compound | λirr (nm) | ||
|---|---|---|---|
| 470–530 | 10–140 | 220 | |
| 530 | 180 | 220 | |
| 590 | 10 | 60 | |
| 405 | 10 | 80 |
Symbols are defined as follows: λirr, the most efficient LED central wavelength regarding the generation of the metastable linkage isomer; Tirr, the temperature at which the metastable linkage isomer’s population is the highest; and Trev, the temperature at which the system reverts back to the ground state.
Figure 8Photodifference Fourier maps (FON–FOFF) indicating the coexistence of both nitro (−N(O)2) and endo-nitrito (−ONO) linkage isomers for (a) Ni-2a and two symmetry-independent molecules of Ni-2b, namely (b) molecule A and (c) molecule B. Solid blue lines represent positive values, dashed red lines represent negative values, and contours are at ±0.2 e·Å–3.
Figure 9Populations (P) of the metastable linkage isomer (endo-nitrito form) for the Ni-2a complex observed during the multi-temperature (cooling and heating) and photocrystallographic experiments. Blue circles denote data from the cooling experiment, red squares denote data from the heating experiment, and green stars denote data from the heating experiment after LED irradiation (denoted schematically with a thick green arrow; the 140 K structure before irradiation is shown as a green circle). Note that a different crystal was used for the photocrystallographic experiment than that used in the multi-temperature measurements.
endo-Nitrito Linkage Isomer Populations (P) and Reaction-Cavity Volumes (Vcav) per Complex Molecule Calculated for the Ni-2a Complex during Photocrystallographic Experimentsa
| compound | |||
|---|---|---|---|
| 140 | 0.0 | 39.4 | |
| 140 | 26.2(2) | 38.8 | |
| 160 | 34.3(3) | 33.5 | |
| 180 | ≈3 | 31.7 | |
| 200 | 0.0 | 41.09 | |
| 160 | 0.0 | 27.7 | |
| 160 | 36(1) | 28.1 | |
| 240 | 0.0 | 30.5 |
Calculated before and after irradiation during structure thermal relaxation. Cavity volumes were computed with the MERCURY program (probe radius of 1.2 Å and grid spacing of 0.1 Å). Note that several values are provided for the Ni-2b crystal structure. Note that the standard deviation on Vcav was estimated to be ca. 0.5 Å3.[16]
Before irradiation.
Roughly estimated based on the generated residual density maps.
Symmetry-independent molecule A.
Symmetry-independent molecule B.
Figure 10Overlay of molecular geometries obtained from the experiment at 140 K (red), isolated-molecule calculations (blue), and QM/MM calculations (green) for the (a) nitro and (b) endo-nitrito isomers of the Ni-2a complex. Hydrogen atoms have been omitted for clarity. The N2, N3, O3, and metal atoms have been superimposed using the least-squares procedure implemented in the MERCURY program.
Energy Differences (ΔErel) between the Ground (Nitro) and Metastable (endo-Nitrito) Linkage Isomers Computed Using the QM/MM Approach and the Optimized Isolated-Molecule Geometriesa
| Δ | |||
|---|---|---|---|
| complex | form | QM/MM | isolated molecule |
| nitro | 0.0 | 0.0 | |
| 48.4 | 5.9 | ||
| 73.8 | 14.3 | ||
| nitro | 0.0 | 0.0 | |
| 15.5 | 8.2 | ||
| 60.3 | 8.6 | ||
| nitro | 0.0 | 0.0 | |
| 21.2 | 8.2 | ||
| 41.2 | 8.6 | ||
Computations were performed at the DFT(B3LYP)/6-311++G** level of theory.
Figure 11Motif interaction energies for selected (a) Ni-2a and (b) Ni-2b dimers containing one or two metastable (MS) endo-nitrito forms compared with ground-state (GS) dimers. For numerical data, see the Supporting Information. GS-MS means that the first molecule is in the ground state and the second molecule in the excited state; in the case of asymmetric motifs, the first molecule is always the left one, as shown in Figure .