| Literature DB >> 35427368 |
Eun Pyo Hong1, Dong Hyuk Youn1, Bong Jun Kim1, Jae Jun Lee1, Doyoung Na2, Jun Hyong Ahn3, Jeong Jin Park4, Jong Kook Rhim5, Heung Cheol Kim6, Hong Jun Jeon2, Gyojun Hwang7, Jin Pyeong Jeon2.
Abstract
Polygenic risk scores (PRSs) have an important relevance to approaches for clinical usage in intracranial aneurysm (IA) patients. Hence, we aimed to develop IA-predicting PRS models including the genetic basis shared with acute ischemic stroke (AIS) in Korean populations. We applied a weighted PRS (wPRS) model based on a previous genome-wide association study (GWAS) of 250 IA patients in a hospital-based multicenter cohort, 222 AIS patients in a validation study, and 296 shared controls. Risk predictability was analyzed by the area under the receiver operating characteristic curve (AUROC). The best-fitting risk models based on wPRSs were stratified into tertiles representing the lowest, middle, and highest risk groups. The weighted PRS, which included 29 GWASs (p < 5×10-8) and two reported genetic variants (p < 0.01), showed a high predictability in IA patients (AUROC = 0.949, 95% CI: 0.933-0.966). This wPRS was significantly validated in AIS patients (AUROC = 0.842, 95% CI: 0.808-0.876; p < 0.001). Two-stage risk models stratified into tertiles showed an increased risk for IA (OR = 691.25, 95% CI: 241.77-1976.35; p = 3.1×10-34; sensitivity/specificity = 0.728/0.963), which was replicated in AIS development (OR = 39.76, 95% CI: 16.91-93.49; p = 3.1×10-17; sensitivity/specificity = 0.284/0.963). A higher wPRS for IA may be associated with an increased risk of AIS in the Korean population. These findings suggest that IA and AIS may have a shared genetic architecture and should be studied further to generate a precision medicine model for use in personalized diagnosis and treatment.Entities:
Mesh:
Year: 2022 PMID: 35427368 PMCID: PMC9012378 DOI: 10.1371/journal.pone.0265581
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Fig 1Equation for calculating individual polygenic risk scores under the additive predictor model.
Fig 2The number of summed risk alleles in (A) 250 intracranial aneurysm (IA) and (B) 222 acute ischemic stroke (AIS) patients compared to 296 shared controls. The X-axis indicates the number of risk alleles. The Y-axis indicates the sample size. The red and blue bars indicate cases and controls, respectively.
Fig 3Predictability of polygenic risk scores in (A) 250 intracranial aneurysm (IA) and (B) 222 acute ischemic stroke (AIS) patients compared to 296 shared controls. The area under the receiver operating characteristic curves (AUROC) showed 0.949 for the risk of IA and 0.842 for the AIS.
Fig 4The frequencies of cases and controls and their risks of diseases according to risk tertiles.
The polygenic risk model of (A) 250 intracranial aneurysm (IA) and (B) acute ischemic stroke (AIS) patients compared to 296 shared controls. The polygenic risk model was comprised of 29 genome-wide signals plus two reported loci. The white and gray bars denote the percentages of controls and cases, respectively (left Y-axis). The solid lines and dots denote the odds ratios (OR) with standard errors for each risk group compared to the lowest risk group (right Y-axis). The X-axis displays the risk tertiles (T1: tertile 1, lowest risk group; T2: tertile 2, middle risk-group; T3: tertile 3, highest risk group).
Weighted polygenic risk model for intracranial aneurysm (IA) and acute ischemic stroke (AIS).
| Model | Case, N (%) | Control, N (%) | OR (95% CI) |
| Sens. | Spec. | AUROC |
|---|---|---|---|---|---|---|---|
|
| N = 250 | N = 296 | |||||
| T1: 0.290–0.712 | 7 (2.8) | 213 (72.0) | 1.00 | ||||
| T2: 0.712–0.789 | 61 (24.4) | 72 (24.3) | 29.84 (12.35–72.07) | 4.4×10−14 | 0.972 | 0.720 | |
| T3: 0.789–1.126 | 182 (72.8) | 11 (3.7) | 691.25 (241.77–1976.35) | 3.1×10−34 | 0.728 | 0.963 | 0.930 |
|
| N = 222 | ||||||
| T1: 0.290–0.712 | 36 (16.2) | 1.00 | |||||
| T2: 0.712–0.789 | 123 (55.4) | 11.39 (6.43–20.17) | 7.7×10−17 | 0.838 | 0.720 | ||
| T3: 0.789–1.126 | 63 (28.4) | 39.76 (16.91–93.46) | 3.1×10−17 | 0.284 | 0.963 | 0.803 |
AUROC, area under the receiver operating characteristic curve; CI, confidence interval; OR, odds ratio; Sens., sensitivity; Spec., specificity.
a Weighted polygenic risk model tertile stratified into lowest risk, middle risk, and highest risk in 768 subjects containing 250 IA patients, 222 AIS patients, and 296 shared controls.
b OR, 95% CI, and p-value were estimated by multivariate logistic regression analysis after adjusting for age, gender, hypertension, diabetes, hyperlipidemia, smoking status, and 4 principal component values.
c Sensitivity, specificity, and AUROC were estimated by “roctab” package of STATA software.