| Literature DB >> 35425787 |
Yangchang Zhang1,2,3,4, Yang Xiong5, Shisi Shen6, Jialu Yang1,2,3, Wei Wang1,2,3, Tingting Wu7, Li Chen8, Qiuhua Yu9, Hangjia Zuo6, Xu Wang1,2,3, Xun Lei1,2,3,4.
Abstract
Background: Causal research concerning the consumption of tea and the risk of chronic kidney disease (CKD) is limited. This study identified the potential causal effects of tea intake on CKD, the estimated glomerular filtration rate (eGFR), and albuminuria.Entities:
Keywords: Mendelian randomization; SNPs; albuminuria; chronic kidney disease (CKD); tea consumption
Year: 2022 PMID: 35425787 PMCID: PMC9002236 DOI: 10.3389/fnut.2022.801591
Source DB: PubMed Journal: Front Nutr ISSN: 2296-861X
Characteristics of SNPs associated with tea consumption.
| SNP | Position | EAF | EA | BETA | SE |
| N |
| |
| rs1030510 | 7:17100273 | 0.45 | G | –0.0436 | 0.0069 | 3.6E-10 | 349376 | 0.000114 | 40 |
| rs10741694 | 11:16286183 | 0.63 | C | 0.0404 | 0.0071 | 1.53E-08 | 349376 | 0.0000927 | 32 |
| rs11022751 | 11:13307613 | 0.27 | C | 0.0497 | 0.0078 | 1.83E-10 | 349376 | 0.000116 | 41 |
| rs112476491 | 7:17204040 | 0.03 | A | –0.1186 | 0.0194 | 8.88E-10 | 349376 | 0.000107 | 37 |
| rs11487328 | 1:174601659 | 0.38 | C | –0.0493 | 0.0071 | 5.16E-12 | 349376 | 0.000138 | 48 |
| rs11636222 | 15:75515312 | 0.23 | G | –0.0557 | 0.0089 | 3.79E-10 | 349376 | 0.000112 | 39 |
| rs12591786 | 15:60902512 | 0.16 | T | –0.0609 | 0.0096 | 2.32E-10 | 349376 | 0.000115 | 40 |
| rs12600469 | 17:40834073 | 0.62 | T | 0.0406 | 0.0071 | 1.22E-08 | 349376 | 0.0000936 | 33 |
| rs12901092 | 15:75374145 | 0.39 | A | –0.0654 | 0.0071 | 3.2E-20 | 349376 | 0.000243 | 85 |
| rs12916473 | 15:75321999 | 0.04 | A | 0.1233 | 0.0185 | 2.63E-11 | 349376 | 0.000127 | 44 |
| rs140775622 | 20:62962869 | 0.17 | T | 0.0707 | 0.0099 | 9.33E-13 | 349376 | 0.000146 | 51 |
| rs1481012 | 4:89039082 | 0.11 | G | –0.0778 | 0.0109 | 9.41E-13 | 349376 | 0.000146 | 51 |
| rs149375687 | 5:152034989 | 0.27 | T | –0.0449 | 0.0078 | 7.26E-09 | 349376 | 0.0000948 | 33 |
| rs1601409 | 12:17066769 | 0.46 | G | 0.0382 | 0.0069 | 3.67E-08 | 349376 | 0.0000877 | 31 |
| rs1669433 | 12:11349732 | 0.84 | G | 0.0551 | 0.0093 | 3.33E-09 | 349376 | 0.0001 | 35 |
| rs17645813 | 7:17419697 | 0.08 | A | –0.1058 | 0.013 | 3.32E-16 | 349376 | 0.00019 | 66 |
| rs199621380 | 1:150700614 | 0.41 | G | 0.0413 | 0.007 | 4.53E-09 | 349376 | 0.0000996 | 35 |
| rs200062544 | 7:17260246 | 0.47 | A | 0.049 | 0.007 | 2.64E-12 | 349376 | 0.00014 | 49 |
| rs2315024 | 19:19423817 | 0.33 | A | 0.0434 | 0.0073 | 2.98E-09 | 349376 | 0.000101 | 35 |
| rs2465018 | 6:51241140 | 0.23 | A | 0.0635 | 0.0082 | 1.38E-14 | 349376 | 0.000172 | 60 |
| rs2472297 | 15:75027880 | 0.27 | T | 0.1576 | 0.0078 | 3.82E-91 | 349376 | 0.00117 | 408 |
| rs28548701 | 15:74346021 | 0.8 | C | –0.0502 | 0.0086 | 5.82E-09 | 349376 | 0.0000975 | 34 |
| rs28676340 | 15:75449794 | 0.16 | G | –0.0564 | 0.01 | 1.96E-08 | 349376 | 0.000091 | 32 |
| rs34591452 | 15:74492585 | 0.24 | T | 0.0759 | 0.0081 | 5.48E-21 | 349376 | 0.000251 | 88 |
| rs34606716 | 7:75820449 | 0.24 | A | –0.0453 | 0.0082 | 2.7E-08 | 349376 | 0.0000873 | 31 |
| rs3815455 | 7:75611756 | 0.29 | T | 0.0647 | 0.0076 | 1.74E-17 | 349376 | 0.000207 | 72 |
| rs397074 | 15:74599997 | 0.31 | C | –0.0521 | 0.0075 | 2.8E-12 | 349376 | 0.000138 | 48 |
| rs4410790 | 7:17284577 | 0.63 | C | 0.1215 | 0.0072 | 1.89E-64 | 349376 | 0.000814 | 285 |
| rs4817505 | 21:34343828 | 0.39 | C | 0.0411 | 0.0071 | 6.22E-09 | 349376 | 0.0000959 | 34 |
| rs4887165 | 15:74889356 | 0.81 | C | 0.0539 | 0.0089 | 1.22E-09 | 349376 | 0.000105 | 37 |
| rs60223362 | 7:17459648 | 0.2 | C | –0.0747 | 0.0086 | 5.35E-18 | 349376 | 0.000216 | 75 |
| rs6495129 | 15:75196717 | 0.2 | T | –0.0582 | 0.0086 | 1.35E-11 | 349376 | 0.000131 | 46 |
| rs6697410 | 1:26756209 | 0.74 | T | 0.0436 | 0.0079 | 4.1E-08 | 349376 | 0.0000872 | 30 |
| rs6965666 | 7:17177312 | 0.28 | C | –0.0503 | 0.0078 | 9.14E-11 | 349376 | 0.000119 | 42 |
| rs7174381 | 15:75613289 | 0.31 | C | 0.0522 | 0.0075 | 3.85E-12 | 349376 | 0.000139 | 48 |
| rs73071153 | 7:17545964 | 0.03 | A | –0.1312 | 0.0194 | 1.32E-11 | 349376 | 0.000131 | 46 |
| rs73075157 | 7:17566844 | 0.13 | A | –0.0678 | 0.0103 | 5.42E-11 | 349376 | 0.000124 | 43 |
| rs73169830 | 22:24885208 | 0.08 | C | 0.1027 | 0.0131 | 3.81E-15 | 349376 | 0.000176 | 61 |
| rs73424602 | 22:41461176 | 0.4 | T | –0.0432 | 0.007 | 7.84E-10 | 349376 | 0.000109 | 38 |
| rs77821156 | 7:17331450 | 0.11 | G | 0.0643 | 0.0113 | 1.39E-08 | 349376 | 0.0000927 | 32 |
| rs79217743 | 15:75117912 | 0.14 | T | –0.0602 | 0.0102 | 3.34E-09 | 349376 | 0.0000997 | 35 |
| rs79413667 | 7:17399486 | 0.03 | G | –0.1171 | 0.0201 | 6.03E-09 | 349376 | 0.0000971 | 34 |
| rs79694830 | 7:17286087 | 0.06 | T | 0.0951 | 0.015 | 2.26E-10 | 349376 | 0.000115 | 40 |
| rs7999399 | 13:89233505 | 0.55 | T | 0.0379 | 0.0069 | 4.96E-08 | 349376 | 0.0000863 | 30 |
| rs9624470 | 22:24820268 | 0.58 | A | 0.0729 | 0.007 | 3.06E-25 | 349376 | 0.00031 | 108 |
SNP, single-nucleotide polymorphism; EAF, effect allele frequency; EA, effect allele; SE, standard error. R
FIGURE 1Forest plots of Mendelian randomization (MR) study using genetically predicted tea consumption with chronic kidney disease (CKD), glomerular filtration rate (GFR), and albuminuria. Inverse-variance-weighted (IVW), MR-Egger, weighted median, simple, and weighted mode were used in this study. *Denotes the removal of two single-nucleotide polymorphism (SNPs; rs1030510 and rs4410790) that might give rise to significant heterogeneity (MR-Egger intercept p = 0.02).
FIGURE 2Scatter plot of the effect size for each SNP on tea consumption and CKD G3–G5.
FIGURE 3Scatter plot of the effect size for each SNP on tea consumption and the estimated glomerular filtration rate (eGFR).
FIGURE 4Scatter plot of the effect size for each SNP on tea consumption and albuminuria. (A) No SNP was excluded. (B) Two SNPs were removed (rs1030510 and rs4410790) due to potential horizontal pleiotropy.