Literature DB >> 35422414

Relationship between fitness and heterogeneity in exponentially growing microbial populations.

Anna Paola Muntoni1, Alfredo Braunstein2, Andrea Pagnani2, Daniele De Martino3, Andrea De Martino4.   

Abstract

Despite major environmental and genetic differences, microbial metabolic networks are known to generate consistent physiological outcomes across vastly different organisms. This remarkable robustness suggests that, at least in bacteria, metabolic activity may be guided by universal principles. The constrained optimization of evolutionarily motivated objective functions, such as the growth rate, has emerged as the key theoretical assumption for the study of bacterial metabolism. While conceptually and practically useful in many situations, the idea that certain functions are optimized is hard to validate in data. Moreover, it is not always clear how optimality can be reconciled with the high degree of single-cell variability observed in experiments within microbial populations. To shed light on these issues, we develop an inverse modeling framework that connects the fitness of a population of cells (represented by the mean single-cell growth rate) to the underlying metabolic variability through the maximum entropy inference of the distribution of metabolic phenotypes from data. While no clear objective function emerges, we find that, as the medium gets richer, the fitness and inferred variability for Escherichia coli populations follow and slowly approach the theoretically optimal bound defined by minimal reduction of variability at given fitness. These results suggest that bacterial metabolism may be crucially shaped by a population-level trade-off between growth and heterogeneity.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35422414      PMCID: PMC9199093          DOI: 10.1016/j.bpj.2022.04.012

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  56 in total

1.  Gaussian processes for classification: mean-field algorithms.

Authors:  M Opper; O Winther
Journal:  Neural Comput       Date:  2000-11       Impact factor: 2.026

2.  Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.

Authors:  O Shoval; H Sheftel; G Shinar; Y Hart; O Ramote; A Mayo; E Dekel; K Kavanagh; U Alon
Journal:  Science       Date:  2012-04-26       Impact factor: 47.728

3.  Quantitative prediction of genome-wide resource allocation in bacteria.

Authors:  Anne Goelzer; Jan Muntel; Victor Chubukov; Matthieu Jules; Eric Prestel; Rolf Nölker; Mahendra Mariadassou; Stéphane Aymerich; Michael Hecker; Philippe Noirot; Dörte Becher; Vincent Fromion
Journal:  Metab Eng       Date:  2015-10-21       Impact factor: 9.783

Review 4.  The acetate switch.

Authors:  Alan J Wolfe
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

Review 5.  Regulation and control of metabolic fluxes in microbes.

Authors:  Luca Gerosa; Uwe Sauer
Journal:  Curr Opin Biotechnol       Date:  2011-05-18       Impact factor: 9.740

Review 6.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 7.  A roadmap for interpreting (13)C metabolite labeling patterns from cells.

Authors:  Joerg M Buescher; Maciek R Antoniewicz; Laszlo G Boros; Shawn C Burgess; Henri Brunengraber; Clary B Clish; Ralph J DeBerardinis; Olivier Feron; Christian Frezza; Bart Ghesquiere; Eyal Gottlieb; Karsten Hiller; Russell G Jones; Jurre J Kamphorst; Richard G Kibbey; Alec C Kimmelman; Jason W Locasale; Sophia Y Lunt; Oliver D K Maddocks; Craig Malloy; Christian M Metallo; Emmanuelle J Meuillet; Joshua Munger; Katharina Nöh; Joshua D Rabinowitz; Markus Ralser; Uwe Sauer; Gregory Stephanopoulos; Julie St-Pierre; Daniel A Tennant; Christoph Wittmann; Matthew G Vander Heiden; Alexei Vazquez; Karen Vousden; Jamey D Young; Nicola Zamboni; Sarah-Maria Fendt
Journal:  Curr Opin Biotechnol       Date:  2015-02-28       Impact factor: 9.740

8.  Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria.

Authors:  Sheng Hui; Josh M Silverman; Stephen S Chen; David W Erickson; Markus Basan; Jilong Wang; Terence Hwa; James R Williamson
Journal:  Mol Syst Biol       Date:  2015-02-12       Impact factor: 11.429

9.  Optimality and sub-optimality in a bacterial growth law.

Authors:  Benjamin D Towbin; Yael Korem; Anat Bren; Shany Doron; Rotem Sorek; Uri Alon
Journal:  Nat Commun       Date:  2017-01-19       Impact factor: 14.919

10.  Quantifying the benefit of a proteome reserve in fluctuating environments.

Authors:  Matteo Mori; Severin Schink; David W Erickson; Ulrich Gerland; Terence Hwa
Journal:  Nat Commun       Date:  2017-10-31       Impact factor: 14.919

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