Literature DB >> 21600757

Regulation and control of metabolic fluxes in microbes.

Luca Gerosa1, Uwe Sauer.   

Abstract

After about ten years of research renaissance in metabolism, the present challenge is to understand how metabolic fluxes are controlled by a complex interplay of overlapping regulatory mechanisms. Reconstruction of various regulatory network topologies is steaming, illustrating that we underestimated the broad importance of post-translational modifications such as enzyme phosphorylation or acetylation for microbial metabolism. With the growing topological knowledge, the functional relevance of these regulatory events becomes an even more pressing need. A major knowledge gap resides in the regulatory network of protein-metabolite interactions, simply because we lacked pertinent methods for systematic analyses - but a start has now been made. Perhaps most dramatic was the conceptual shift in our perception of metabolism from an engine of cellular operation to a generator of input and feedback signals for regulatory circuits that govern many important decisions on cell proliferation, differentiation, death, and naturally metabolism.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21600757     DOI: 10.1016/j.copbio.2011.04.016

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  48 in total

1.  The functional structure of central carbon metabolism in Pseudomonas putida KT2440.

Authors:  Suresh Sudarsan; Sarah Dethlefsen; Lars M Blank; Martin Siemann-Herzberg; Andreas Schmid
Journal:  Appl Environ Microbiol       Date:  2014-06-20       Impact factor: 4.792

2.  Regulation of reaction fluxes via enzyme sequestration and co-clustering.

Authors:  Florian Hinzpeter; Filipe Tostevin; Ulrich Gerland
Journal:  J R Soc Interface       Date:  2019-07-31       Impact factor: 4.118

3.  Functioning of a metabolic flux sensor in Escherichia coli.

Authors:  Karl Kochanowski; Benjamin Volkmer; Luca Gerosa; Bart R Haverkorn van Rijsewijk; Alexander Schmidt; Matthias Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

4.  Linking post-translational modifications and variation of phenotypic traits.

Authors:  Warren Albertin; Philippe Marullo; Marina Bely; Michel Aigle; Aurélie Bourgais; Olivier Langella; Thierry Balliau; Didier Chevret; Benoît Valot; Telma da Silva; Christine Dillmann; Dominique de Vienne; Delphine Sicard
Journal:  Mol Cell Proteomics       Date:  2012-12-27       Impact factor: 5.911

5.  Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo.

Authors:  Hannes Link; Karl Kochanowski; Uwe Sauer
Journal:  Nat Biotechnol       Date:  2013-03-03       Impact factor: 54.908

Review 6.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 7.  Coordination of microbial metabolism.

Authors:  Victor Chubukov; Luca Gerosa; Karl Kochanowski; Uwe Sauer
Journal:  Nat Rev Microbiol       Date:  2014-03-24       Impact factor: 60.633

8.  Network context and selection in the evolution to enzyme specificity.

Authors:  Hojung Nam; Nathan E Lewis; Joshua A Lerman; Dae-Hee Lee; Roger L Chang; Donghyuk Kim; Bernhard O Palsson
Journal:  Science       Date:  2012-08-31       Impact factor: 47.728

9.  Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: how proteomics can play a key role in metabolic engineering.

Authors:  Mathieu Trauchessec; Michel Jaquinod; Aline Bonvalot; Virginie Brun; Christophe Bruley; Delphine Ropers; Hidde de Jong; Jérôme Garin; Gwenaëlle Bestel-Corre; Myriam Ferro
Journal:  Mol Cell Proteomics       Date:  2014-01-29       Impact factor: 5.911

10.  Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity.

Authors:  Ed Reznik; Dimitris Christodoulou; Joshua E Goldford; Emma Briars; Uwe Sauer; Daniel Segrè; Elad Noor
Journal:  Cell Rep       Date:  2017-09-12       Impact factor: 9.423

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