Literature DB >> 35414016

Exploring the expanding universe of small RNAs.

Junchao Shi1, Tong Zhou2, Qi Chen3.   

Abstract

The world of small noncoding RNAs (sncRNAs) is ever-expanding, from small interfering RNA, microRNA and Piwi-interacting RNA to the recently emerging non-canonical sncRNAs derived from longer structured RNAs (for example, transfer, ribosomal, Y, small nucleolar, small nuclear and vault RNAs), showing distinct biogenesis and functional principles. Here we discuss recent tools for sncRNA identification, caveats in sncRNA expression analysis and emerging methods for direct sequencing of sncRNAs and systematic mapping of RNA modifications that are integral to their function.
© 2022. Springer Nature Limited.

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Year:  2022        PMID： 35414016      PMCID： PMC9035129          DOI： 10.1038/s41556-022-00880-5

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN： 1465-7392            Impact factor:   28.213


  117 in total

1.  Molecular biology: the expanding world of small RNAs.

Authors:  Helge Grosshans; Witold Filipowicz
Journal:  Nature       Date:  2008-01-24       Impact factor: 49.962

Review 2.  PIWI-interacting RNAs: small RNAs with big functions.

Authors:  Deniz M Ozata; Ildar Gainetdinov; Ansgar Zoch; Dónal O'Carroll; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2019-02       Impact factor: 53.242

Review 3.  The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis.

Authors:  Paul Schimmel
Journal:  Nat Rev Mol Cell Biol       Date:  2017-09-06       Impact factor: 94.444

Review 4.  Metazoan MicroRNAs.

Authors:  David P Bartel
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

Review 5.  Regulation by small RNAs in bacteria: expanding frontiers.

Authors:  Gisela Storz; Jörg Vogel; Karen M Wassarman
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 6.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

7.  PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications.

Authors:  Junchao Shi; Yunfang Zhang; Dongmei Tan; Xudong Zhang; Menghong Yan; Ying Zhang; Reuben Franklin; Marta Shahbazi; Kirsty Mackinlay; Shichao Liu; Bernhard Kuhle; Emma R James; Liwen Zhang; Yongcun Qu; Qiwei Zhai; Wenxin Zhao; Linlin Zhao; Changcheng Zhou; Weifeng Gu; Jernej Murn; Jingtao Guo; Douglas T Carrell; Yinsheng Wang; Xuemei Chen; Bradley R Cairns; Xiang-Lei Yang; Paul Schimmel; Magdalena Zernicka-Goetz; Sihem Cheloufi; Ying Zhang; Tong Zhou; Qi Chen
Journal:  Nat Cell Biol       Date:  2021-04-05       Impact factor: 28.824

Review 8.  Small regulatory RNAs in Archaea.

Authors:  Julia Babski; Lisa-Katharina Maier; Ruth Heyer; Katharina Jaschinski; Daniela Prasse; Dominik Jäger; Lennart Randau; Ruth A Schmitz; Anita Marchfelder; Jörg Soppa
Journal:  RNA Biol       Date:  2014-03-31       Impact factor: 4.652

Review 9.  A guide to naming human non-coding RNA genes.

Authors:  Ruth L Seal; Ling-Ling Chen; Sam Griffiths-Jones; Todd M Lowe; Michael B Mathews; Dawn O'Reilly; Andrew J Pierce; Peter F Stadler; Igor Ulitsky; Sandra L Wolin; Elspeth A Bruford
Journal:  EMBO J       Date:  2020-02-24       Impact factor: 11.598

10.  Peripheral blood non-canonical small non-coding RNAs as novel biomarkers in lung cancer.

Authors:  Wanjun Gu; Junchao Shi; Hui Liu; Xudong Zhang; Jin J Zhou; Musheng Li; Dandan Zhou; Rui Li; Jingzhu Lv; Guoxia Wen; Shanshan Zhu; Ting Qi; Wei Li; Xiaojing Wang; Zhaohua Wang; Hua Zhu; Changcheng Zhou; Kenneth S Knox; Ting Wang; Qi Chen; Zhongqing Qian; Tong Zhou
Journal:  Mol Cancer       Date:  2020-11-12       Impact factor: 27.401
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  5 in total

1.  Plasma-Derived Exosomal SncRNA as a Promising Diagnostic Biomarker for Early Detection of HBV-Related Acute-on-Chronic Liver Failure.

Authors:  Wenli Xu; Mingxue Yu; Yuankai Wu; Yusheng Jie; Xiangyong Li; Xinxin Zeng; Fangji Yang; Yutian Chong
Journal:  Front Cell Infect Microbiol       Date:  2022-07-07       Impact factor: 6.073

Review 2.  Current Status of Regulatory Non-Coding RNAs Research in the Tritryp.

Authors:  Rafael Sebastián Fort; Santiago Chavez; Juan M Trinidad Barnech; Carolina Oliveira-Rizzo; Pablo Smircich; José Roberto Sotelo-Silveira; María Ana Duhagon
Journal:  Noncoding RNA       Date:  2022-07-18

3.  Alteration of RNA modification signature in human sperm correlates with sperm motility.

Authors:  Huanping Guo; Xipeng Shen; Hua Hu; Peng Zhou; Tong He; Lin Xia; Dongmei Tan; Xi Zhang; Yunfang Zhang
Journal:  Mol Hum Reprod       Date:  2022-08-12       Impact factor: 4.518

4.  RNA sequencing-based identification of the regulatory mechanism of microRNAs, transcription factors, and corresponding target genes involved in vascular dementia.

Authors:  Kaiyue Zhao; Li Zeng; Zhongdi Cai; Mimin Liu; Ting Sun; Zhuorong Li; Rui Liu
Journal:  Front Neurosci       Date:  2022-09-20       Impact factor: 5.152

5.  Targeting non-coding RNA family members with artificial endonuclease XNAzymes.

Authors:  Maria J Donde; Adam M Rochussen; Saksham Kapoor; Alexander I Taylor
Journal:  Commun Biol       Date:  2022-09-24
  5 in total

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