| Literature DB >> 35409016 |
Mateusz Jakubowski1, Iwona Łakomska1, Adriana Kaszuba1, Andrzej Wojtczak1, Jerzy Sitkowski2,3, Andrzej A Jarzęcki4,5.
Abstract
The platinum(II) complexes of general formula [PtCl2(dstp)(S-donor)] were dstp 5,7-dimethyl-1,2,4-triazolo[1,5-a]-pyrimidine (dmtp), 5,7-ditertbutyl-1,2,4-triazolo[1,5-a]pyrimidine (dbtp), 5-methyl-7-isobutyl-1,2,4-triazolo[1,5-a]pyrimidine (ibmtp) or 5,7-diphenyl-1,2,4-triazolo[1,5-a]pyrimidine (dptp), whereas S-tetrahydrothio-phene-1-oxide (TMSO) or diphenyl sulfoxide (DPSO) were synthesized in a one-pot reaction. Here, we present experimental data (1H, 13C, 15N, 195Pt NMR, IR, X-ray) combined with density functional theory (DFT) computations to support and characterize structure-spectra relationships and determine the geometry of dichloride platinum(II) complexes with selected triazolopyrimidines and sulfoxides. Based on the experimental and theoretical data, factors affecting the stability of platinum(II) complexes have been determined.Entities:
Keywords: DFT; NMR; cis-/trans isomers; platinum(II) complex; triazolopyrimidine
Mesh:
Substances:
Year: 2022 PMID: 35409016 PMCID: PMC8998453 DOI: 10.3390/ijms23073656
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Structures of novel dichloride platinum(II) complexes. The structures contain tetrahydrothiophene-1-oxide (TMSO) for cis isomers (A) and diphenyl sulfoxide (DPSO) for trans isomers (B). IUPAC numbering of 1,2,4-triazolo[1,5-a]pyrimidine derivative is displayed. (A1, B1) R1, R2 = CH3 for dmtp; (A2, B2) R1 = CH2CH(CH3)2, R2 = CH3 for ibmtp; (A3, B3) R1, R2 = C(CH3)3 for dbtp; (A4, B4) R1, R2 = C6H5 for dptp.
Experimental and calculated selected bond lengths [Å] and angles [°] for (A1), (A3), and (B3).
| (A1) | (A3) | (B3) | ||||
|---|---|---|---|---|---|---|
|
| ||||||
| Exp. | Calc. | Exp. | Calc. | Exp. | Calc. | |
| Pt1-N3 | 2.017 (4) | 2.043 | 2.020 (6) | 2.046 | 2.033 (6) | 2.052 |
| Pt1-S1 | 2.199 (14) | 2.256 | 2.199 (2) | 2.274 | 2.215 (18) | 2.267 |
| Pt1-Cl1 | 2.301 (12) | 2.343 | 2.307 (2) | 2.349 | 2.281 (2) | 2.357 |
| Pt1-Cl2 | 2.306 (15) | 2.351 | 2.299 (2) | 2.342 | 2.295 (2) | 2.349 |
|
| ||||||
| Exp. | Calc. | Exp. | Calc. | Exp. | Calc. | |
| N3-Pt1-S1 | 89.65 (13) | 91.5 | 89.28 (18) | 89.33 | 175.29 (16) | 175.6 |
| N3-Pt1-Cl1 | 178.63 (11) | 178.7 | 88.55 (19) | 87.47 | 88.28 (18) | 87.6 |
| S1-Pt1-Cl1 | 90.60 (5) | 91.5 | 177.30 (8) | 176.28 | 92.86 (7) | 94.5 |
| N3-Pt1-Cl2 | 88.56 (13) | 87.9 | 179.17 (19) | 177.19 | 87.58 (18) | 88.0 |
| S1-Pt1-Cl2 | 175.51 (5) | 179.3 | 90.60 (9) | 93.43 | 91.32 (8) | 89.8 |
| Cl1-Pt1-Cl2 | 91.29 (5) | 90.8 | 91.54 (9) | 89.75 | 175.82 (9) | 175.2 |
Figure 2Crystal structure of cis-[PtCl2(dmtp)(TMSO)] (A1), cis-[PtCl2(dbtp)(TMSO)] (A3) and trans-[PtCl2(dbtp) (DPSO)] (B3).
Figure 3Structures superposition of (A1) (atoms: C gray, N blue, O red), (A3) (green) and (B3) (yellow). Heteroatoms are labeled for (A1).
DFT computed values of selected bond lengths (Å) and angles (°) for (A2, A4, B1, B2, B4).
| (A2) | (A4) | (B1) | (B2) | (B4) | |
|---|---|---|---|---|---|
|
| |||||
| Pt1-N3 | 2.042 | 2.043 | 2.053 | 2.054 | 2.052 |
| Pt1-S1 | 2.259 | 2.258 | 2.267 | 2.266 | 2.267 |
| Pt1-Cl1 | 2.351 | 2.349 | 2.348 | 2.350 | 2.355 |
| Pt1-Cl2 | 2.341 | 2.343 | 2.355 | 2.355 | 2.355 |
|
| |||||
| N3-Pt1-S1 | 91.5 | 91.4 | 175.4 | 175.4 | 175.7 |
| N3-Pt1-Cl1 | 87.7 | 87.8 | 87.4 | 87.3 | 87.8 |
| S1-Pt1-Cl1 | 178.6 | 179.1 | 94.5 | 94.6 | 90.5 |
| N3-Pt1-Cl2 | 178.5 | 178.5 | 87.9 | 88.0 | 87.7 |
| S1-Pt1-Cl2 | 89.9 | 89.9 | 90.1 | 90.0 | 90.5 |
| Cl1-Pt1-Cl2 | 90.9 | 90.9 | 174.8 | 175.1 | 174.6 |
Experimental and calculated 1H, 13C, 15N, and 195Pt NMR chemical shifts for selected atoms of the platinum(II) complexes with tetrahydrothiophene-1-oxide (TMSO).
| (A1) | (A2) | (A3) | (A4) | |||||
|---|---|---|---|---|---|---|---|---|
| Expt. | Calc. | Expt. | Calc. | Expt. | Calc. | Expt. | Calc. | |
| δH2 | 8.53 (+0.13) | 8.82 | 8.56 (+0.10) | 8.83 | 8.56 (+0.14) | 8.86 | 8.66 (+0.07) | 8.88 |
| δH6 | 7.07 (+0.26) | 7.55 | 6.95 (+0.22) | 7.52 | 7.16 (+0.16) | 7.74 | 7.79 (+0.07) | 8.30 |
| δC2 | 153.0 (−2.2) | 153.10 | 152.9 (−2.3) | 152.72 | 152.1 (−2.1) | 151.56 | 153.7 (−1.1) | 153.79 |
| δC3a | 151.9 (−3.2) | 151.34 | 151.8 (−3.6) | 151.87 | 152.5 (−3.4) | 151.90 | 153.0 (−2.3) | 152.63 |
| δC5 | 168.7 (+4.0) | 168.86 | 168.6 (+3.9) | 168.21 | 179.1 (+3.4) | 179.50 | 164.4 (+1.9) | 163.00 |
| δC6 | 113.4 (+2.6) | 110.44 | 113.2 (+2.7) | 111.24 | 106.0 (+2.6) | 106.01 | 108.8 (+1.6) | 106.64 |
| δC7 | 148.1 (+1.4) | 149.74 | 151.1 (+1.4) | 152.49 | 158.7 (+1.3) | 160.73 | 149.3 (+0.9) | 150.21 |
| δN1 | −110.6 (+1.6) | −116.91 | −110.7 (+1.3) | −118.69 | −106.6 (+0.4) | −113.26 | −110.3 (+1.0) | −117.28 |
| δN3 | −226.2 (−72.2) | −207.31 | −226.7 (−72.7) | −206.98 | −228.0 (−70.9) | −208.19 | −225.5 (−64.6) | −207.80 |
| δN4 | −114.5 (−1.1) | −125.52 | −114.4 (−1.0) | −126.62 | −114.7 (+0.2) | −130.09 | −122.2 (−0.4) | −137.47 |
| δN8 | −157.2 (−2.3) | −165.06 | −157.9 (−2.4) | −165.27 | −160.3 (−2.2) | −166.95 | −162.0(−2.2) | −170.60 |
| δPt | −3010 | −3209.32 | −3007 | −3202.16 | −3000 | −3186.18 | −3009 | −3195.93 |
Experimental and calculated 1H, 13C, 15N, and 195Pt NMR chemical shifts for selected atoms of the platinum(II) complexes with diphenyl sulfoxide (DPSO).
| (B1) | (B2) | (B3) | (B4) | |||||
|---|---|---|---|---|---|---|---|---|
| Expt. | Calc. | Expt. | Calc. | Expt. | Calc. | Expt. | Calc. | |
| δH2 | 8.57 (+0.17) | 8.87 | 8.55 (+0.09) | 8.86 | 8.54 (+0.12) | 8.92 | 8.65 (+0.06) | 8.97 |
| δH6 | 7.01 (+0.20) | 7.57 | 6.93 (+0.20) | 7.55 | 7.15 (+0.15) | 7.74 | 7.79 (+0.07) | 8.36 |
| δC2 | 152.9 (−2.3) | 152.81 | 152.8 (−2.4) | 152.69 | 151.8 (−2.4) | 152.13 | 153.6 (−1.2) | 153.59 |
| δC3a | 151.8 (−3.3) | 151.62 | 152.1 (−3.3) | 151.72 | 152.5 (−3.4) | 152.33 | 152.9 (−2.4) | 152.77 |
| δC5 | 168.8 (+4.1) | 168.44 | 168.6 (+3.9) | 168.37 | 179.0 (+3.3) | 180.05 | 164.2 (+1.7) | 163.33 |
| δC6 | 113.4 (+2.6) | 110.50 | 113.1 (+2.6) | 111.24 | 106.0 (+2.6) | 103.99 | 108.7 (+1.5) | 106.82 |
| δC7 | 148.0 (+1.3) | 149.77 | 151.0 (+1.3) | 152.67 | 158.7 (+1.3) | 161.84 | 149.3 (+0.9) | 150.65 |
| δN1 | −110.6 (+1.6) | −117.15 | −110.7 (+1.3) | −117.15 | −106.0 (+1.0) | −113.19 | −110.0 (+1.3) | −117.58 |
| δN3 | −226.6 (−72.6) | −213.13 | −227.1 (−73.1) | −213.80 | −227.7 (−70.6) | −217.63 | −225.4 (−64.5) | −213.41 |
| δN4 | −113.7(−0.3) | −126.29 | −113.6 (−0.2) | −126.25 | −115.1 (−0.2) | −125.87 | −122.0 (+0.2) | −136.29 |
| δN8 | −157.4 (−2.5) | −163.81 | −158.1 (−2.6) | −164.62 | −160.4 (−2.3) | 165.46 | −162.0 (−2.2) | 169.46 |
| δPt | −3097 | −3465.9 | −3095 | −3466.9 | −3099 | 3445.3 | −3101 | 3442.8 |
Figure 415N NMR chemical shifts of free ligand (ibmtp) and platinum(II) complexes cis-[PtCl2(ibmtp)(TMSO)] and trans-[PtCl2(DPSO) (ibmtp)].
Figure 5195Pt NMR chemical shifts of a substrate (K2PtCl4) and platinum(II) complexes with sulfoxides.
Figure 6Calculated scan of the potential energy surface (panel (A)) and 195Pt NMR shifts (panel (B)) as a function of the (C3a)-Pt1-S1 = O1 torsional angle for trans-isomers of dmtp (black), dbtp (blue), ibmtp (green), and dptp (red). A red bar between the panels indicates a degree of rotational freedom within about 2 kcal/mol above the rotational energy minimum (complete 360-degree rotation). See a table in the supplementary material for values used in the graphs.
Figure 7Histogram of calculated 195Pt NMR for (B1–B4) complexes, trans-isomers (red bars), and corresponding cis-isomers (black bars) of [PtCl2(DPSO)(dstp)] structures. See a table in the supplementary materials for values used in the graphs.
Crystal data and structure refinement for (A1, A3 and B3).
| Compound | |||
|---|---|---|---|
| Empirical formula | C11H16Cl2N4OPtS | C17H28Cl2N4OPtS | C25H30Cl2N4OPtS |
| Formula weight | 518.33 | 602.48 | 700.58 |
| Temperature; K | 293 (2) | 293 (2) | 293 (2) |
| Wavelength; Å | 0.71073 | 0.71073 | 0.71073 |
| Crystal system | Monoclinic | Monoclinic | Triclinic |
| Space group | P21/n | P21/n | P-1 |
| Unit cell dimensions; Å, ° | a = 10.7446 (3) | a = 12.3610 (16) | a = 9.3248 (7) |
| b = 8.3993 (3) | b = 10.1722 (10) | b = 10.8972 (8) | |
| c = 18.0425 (6) | c = 17.871 (2) | c = 14.6506 (12) | |
| α = 90 | α =90 | α =88.183 (6) | |
| β = 98.946 (3) | β = 94.347 (10) | β = 73.143 (7) | |
| γ = 90 | γ = 90 | γ = 77.059 (6) | |
| Volume; Å3 | 1608.48 (10) | 2240.6 (5) | 1387.67 (19) |
| Z | 4 | 4 | 2 |
| Density (calculated); Mg/m3 | 2.140 | 1.786 | 1.677 |
| Absorption coefficient; mm−1 | 9.185 | 6.608 | 5.348 |
| F (000) | 984 | 1176 | 688 |
| Crystal size; mm | 0.340 × 0.209 × 0.136 | 0.609 × 0.579 × 0.194 | 0.312 × 0.237 × 0.086 |
| Theta range for data collection | 2.285 to 28.462°. | 2.305 to 28.486°. | 2.342 to 28.516°. |
| Index ranges | −13 < = h < = 14, −10 < = k < = 10, −23 < = l < = 21 | −15 < = h < = 15, −12 < = k < = 13, −21 < = l < = 23 | −12 < = h < = 12, −13 < = k < = 13, −19 < = l < = 13 |
| Reflections collected | 10,499 | 15,074 | 9764 |
| Independent reflections | 3696 [R(int) = 0.0474] | 5184 [R(int) = 0.0716] | 6129 [R(int) = 0.0389] |
| Completeness to theta = 25.242° | 100.0 % | 99.9 % | 99.9 % |
| Max. and min. transmission | 0.429 and 0.135 | 0.377 and 0.060 | 0.657 and 0.366 |
| Refinement method | Full-matrix least-squares on F2 | Full-matrix least-squares on F2 | Full-matrix least-squares on F2 |
| Data/restraints/parameters | 3696/0/181 | 5184/0/235 | 6129/0/307 |
| Goodness-of-fit on F2 | 0.995 | 1.052 | 1.063 |
| Final R indices [I > 2sigma(I)] | R1 = 0.0314, wR2 = 0.0497 | R1 = 0.0541, wR2 = 0.1178 | R1 = 0.0412, wR2 = 0.0744 |
| R indices (all data) | R1 = 0.0524, wR2 = 0.0539 | R1 = 0.0816, wR2 = 0.1347 | R1 = 0.0597, wR2 = 0.0918 |
| Largest diff. peak and hole; e.Å−3 | 1.203 and −0.791 | 2.862 and −1.726 | d −0.768 |