| Literature DB >> 35406418 |
Hishan Tharmaseelan1, Alexander Hertel1, Fabian Tollens1, Johann Rink1, Piotr Woźnicki1, Verena Haselmann2, Isabelle Ayx1, Dominik Nörenberg1, Stefan O Schoenberg1, Matthias F Froelich1.
Abstract
(1) Background: Tumoral heterogeneity (TH) is a major challenge in the treatment of metastatic colorectal cancer (mCRC) and is associated with inferior response. Therefore, the identification of TH would be beneficial for treatment planning. TH can be assessed by identifying genetic alterations. In this work, a radiomics-based approach for assessment of TH in colorectal liver metastases (CRLM) in CT scans is demonstrated. (2)Entities:
Keywords: colorectal cancer; computed tomography; liver metastases; metastasis; radiomics
Year: 2022 PMID: 35406418 PMCID: PMC8997087 DOI: 10.3390/cancers14071646
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1Patient collective definition consort flow diagram.
Patient characteristics. Median and IQR.
| Variable | Overall | |
|---|---|---|
|
| 47 | |
| Age at CT (median [IQR]) | 65.79 [56.99, 74.62] | |
| Sex (%) | ||
| F | 17 (36.2%) | |
| M | 30 (63.8%) | |
| Tumor Location (%) | ||
| Colon | 1 (2.1%) | |
| Colon asc | 2 (4.3%) | |
| Colon desc | 3 (6.4%) | |
| Colon tran. | 3 (6.4%) | |
| Rectum | 29 (61.7%) | |
| Rectosigmoid Junction | 2 (4.3%) | |
| Sigma | 7 (14.9%) | |
| T-Stage (%) | ||
| T1 | 2 (4.3%) | |
| T2 | 4 (8.5%) | |
| T3 | 24 (51.1%) | |
| T4 | 15 (31.9%) | |
| Tx | 2 (4.3%) | |
| N-Stage (%) | ||
| N0 | 8 (17.0%) | |
| N1 | 18 (38.3%) | |
| N2 | 20 (42.6%) | |
| Nx | 1 (2.1%) | |
| M-Stage (%) | ||
| M1 | 47 (100.0%) | |
| pre-CT Surgery (%) | ||
| No | 6 (30.0%) | |
| Yes | 14 (70.0%) | |
| Unknown | 27 | |
| pre-CT Chemotherapy (%) | ||
| No | 21 (46.7%) | |
| Yes | 24 (53.3%) | |
| Unknown | 2 | |
| KRAS-Mutation (%) | ||
| No | 23 (67.6%) | |
| Yes | 11 (32.4%) | |
| Unknown | 13 | |
| NRAS-Mutation (%) | ||
| No | 32 (94.1%) | |
| Yes | 2 (5.9%) | |
| Unknown | 13 | |
| BRAF-Mutation (%) | ||
| No | 13 (86.7%) | |
| Yes | 2 (13.3%) | |
| Unknown | 32 | |
| MSS/MSI (%) | ||
| MSI | 1 (5.0%) | |
| MSS | 19 (95.0%) | |
| Unknown | 27 | |
Figure 2Example segmentations of a patient.
Figure 3(a) Radiomics feature information of all lesions without clustering. (b) Unsupervised clustering of lesions and features.
Clusters and per-lesion patient characteristics.
| Variable | Cluster 1 | Cluster 2 | Cluster 3 | Cluster 4 | Cluster 5 |
| |
|---|---|---|---|---|---|---|---|
| 31 | 105 | 64 | 59 | 2 | |||
| Sex (%) | F | 18 (20.22%) | 14 (15.73%) | 34 (38.2%) | 22 (24.72%) | 1 (1.12%) | <0.001 |
| M | 13 (7.56%) | 91 (52.91%) | 30 (17.44%) | 37 (21.51%) | 1 (0.58%) | ||
| Tumor Location (%) | Colon | 0 (0%) | 0 (0%) | 2 (100%) | 0 (0%) | 0 (0%) | <0.001 |
| Colon asc. | 0 (0%) | 8 (50%) | 4 (25%) | 4 (25%) | 0 (0%) | ||
| Colon desc. | 0 (0%) | 8 (38.1%) | 3 (14.29%) | 10 (47.62%) | 0 (0%) | ||
| Colon tran. | 3 (21.43%) | 1 (7.14%) | 2 (14.29%) | 8 (57.14%) | 0 (0%) | ||
| Rectum | 25 (15.15%) | 74 (44.85%) | 44 (26.67%) | 21 (12.73%) | 1 (0.61%) | ||
| Rectosigmoid Junction | 0 (0%) | 0 (0%) | 4 (44.44%) | 5 (55.56%) | 0 (0%) | ||
|
| 3 (8.82%) | 14 (41.18%) | 5 (14.71%) | 11 (32.35%) | 1 (2.94%) | ||
| T-Stage (%) | T1 | 0 (0.0%) | 2 (1.9%) | 3 (4.7%) | 1 (1.7%) | 0 (0.0%) | 0.009 |
| T2 | 6 (19.4%) | 13 (12.4%) | 3 (4.7%) | 6 (10.2%) | 0 (0.0%) | ||
| T3 | 16 (51.6%) | 57 (54.3%) | 22 (34.4%) | 24 (40.7%) | 1 (50.0%) | ||
| T4 | 6 (19.4%) | 33 (31.4%) | 32 (50.0%) | 28 (47.5%) | 1 (50.0%) | ||
| Tx | 3 (9.7%) | 0 (0.0%) | 4 (6.2%) | 0 (0.0%) | 0 (0.0%) | ||
| N-Stage (%) | N0 | 2 (6.5%) | 9 (8.6%) | 12 (18.8%) | 5 (8.5%) | 0 (0.0%) | <0.001 |
| N1 | 9 (29.0%) | 68 (64.8%) | 14 (21.9%) | 34 (57.6%) | 2 (100.0%) | ||
| N2 | 17 (54.8%) | 28 (26.7%) | 36 (56.2%) | 20 (33.9%) | 0 (0.0%) | ||
| Nx | 3 (9.7%) | 0 (0.0%) | 2 (3.1%) | 0 (0.0%) | 0 (0.0%) | ||
| pre-CT Surgery (%) | No | 7 (28%) | 13 (52%) | 3 (12%) | 2 (8%) | 0 (0%) | NA |
| Yes | 13 (12.26%) | 43 (40.57%) | 36 (33.96%) | 14 (13.21%) | 0 (0%) | ||
| pre-CT | No | 11 (9.48%) | 61 (52.59%) | 23 (19.83%) | 20 (17.24%) | 1 (0.86%) | 0.006 |
| Yes | 20 (15.27%) | 38 (29.01%) | 41 (31.3%) | 31 (23.66%) | 1 (0.76%) | ||
| KRAS-Mutation (%) | No | 21 (16.15%) | 37 (28.46%) | 37 (28.46%) | 35 (26.92%) | 0 (0%) | <0.001 |
| Yes | 2 (2.3%) | 51 (58.62%) | 20 (22.99%) | 13 (14.94%) | 1 (1.15%) | ||
| NRAS-Mutation (%) | No | 16 (7.77%) | 87 (42.23%) | 54 (26.21%) | 48 (23.3%) | 1 (0.49%) | <0.001 |
| Yes | 7 (63.64%) | 1 (9.09%) | 3 (27.27%) | 0 (0%) | 0 (0%) | ||
| BRAF-Mutation (%) | No | 7 (7.53%) | 26 (27.96%) | 33 (35.48%) | 26 (27.96%) | 1 (1.08%) | <0.001 |
| Yes | 2 (5.88%) | 29 (85.29%) | 3 (8.82%) | 0 (0%) | 0 (0%) | ||
| MSS/MSI (%) | MSI | 0 (0%) | 0 (0%) | 0 (0%) | 2 (100%) | 0 (0%) | 0.095 |
| MSS | 10 (6.9%) | 63 (43.45%) | 43 (29.66%) | 28 (19.31%) | 1 (0.69%) | ||
Figure 4(a) Pearson correlation coefficient heatmap with all features. (b): Heatmap with redundancy reduced features after correlation threshold of 0.75.
Figure 5Feature reduced heatmap clustered by lesions and features (voxel volume was added for reference).
Figure 6Boxplot diagrams for the final feature set (voxel volume was added manually).
Figure 7(a) Visually defined clinical groups of CRC liver metastases. (b) Patient with relevant interlesional heterogeneity and presence of lesions from multiple clusters. Visualization of feature firstorder_Range also shows a relevant degree of intralesional heterogeneity of the feature.