| Literature DB >> 35406403 |
Saleh T Alanezi1,2, Frank Sullivan3,4, Christoph Kleefeld2, John F Greally5, Marcin J Kraśny2, Peter Woulfe6, Declan Sheppard6,7, Niall Colgan2.
Abstract
(1) Background: Multiparametric MRI (mp-MRI) is used to manage patients with PCa. Tumor identification via irregular sampling or biopsy is problematic and does not allow the comprehensive detection of the phenotypic and genetic alterations in a tumor. A non-invasive technique to clinically assess tumor heterogeneity is also in demand. We aimed to identify tumor heterogeneity from multiparametric magnetic resonance images using texture analysis (TA). (2)Entities:
Keywords: heterogeneity; multiparametric MRI (mp-MRI); prostate cancer; prostatectomy; texture analysis
Year: 2022 PMID: 35406403 PMCID: PMC8997150 DOI: 10.3390/cancers14071631
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1Flowchart of inclusion and exclusion criteria for patient selection.
The demographic data and ROIs for significant tumors.
| Tumor Significance | Subject Number | Mean Years | Mean PSA (ng/mL) | Mean Area (cm2) |
|---|---|---|---|---|
| Significant (≥3 + 4) | 18 | 63 | 7.5 | 1.58 |
Multiparametric MRI sequence parameters used in this study, including T1, T2, and ADC map images.
| Sequence Parameter | T1 | T2 | ADC Map Image |
|---|---|---|---|
| Repetition time (ms) | 4755.32 | 724.99 | 4137.73 |
| Echo time (ms) | 100 | 6.48 | 84.94 |
| Flip angle (degrees) | 90 | 90 | 90 |
| Bandwidth (Hz/px) | 210 | 620 | 2068 |
| Field of view (mm) | 180 | 180 | 180 |
| Phase FoV % | 100 | 100 | 100 |
| Slice thickness (mm) | 3 | 3 | 4 |
| Slice gap (mm) | 3 | 3 | 4 |
| Average | 2 | 1 | 7 |
| Phase encoding direction | COL | ROW | COL |
| Base matrix | 256 | 560 | 144 |
| Number of acquisitions | 5 | 7 | 15 |
| Acquisition duration(s) | 217.49 | 304.34 | 297.91 |
Figure 2Significant tumor from a single axial slice (arrow images); (a) T1-weighted image; (b) T2-weighted image; (c) ADC map image. Images are from a 58-year-old patient with a significant tumor (≥3 + 4) according to the Gleason and ISUO grades.
Illustrating mean ± SEM value of the ADC map and T2- and T1-weighted images from a first-order statistical analysis of skewness for ROIs containing non-tumors and significant tumors. p-values for differences between ROIs were computed using two-tailed Mann–Whitney U testing. The comparison between ROIs, including tumors and non-tumors, was assessed according to the area under the receiver operator characteristic curve (ROC-AUC) for mp-MRI TA parameters.
| Sequence | Non-Tumor | Significant Tumor (Mean ± SEM) | ROC-AUC | |
|---|---|---|---|---|
| ADC 3 × 3 | 0.06 ± 0.12 | 0.43 ± 0.15 | 0.94 | 0.66 |
| T2 3 × 3 | 0.28 ± 0.94 | 0.01 ± 0.10 | 0.54 | 0.31 |
| T1 3 × 3 | −0.16 ± 0.78 | 0.12 ± 0.10 | 0.29 | 0.39 |
| ADC 6 × 6 | −0.14 ± 0.13 | 0.49 ± 0.11 | 0.001 | 0.82 |
| T26 × 6 | 0.14 ± 0.15 | 0.06 ± 0.03 | 0.8 | 0.47 |
| T1 6 × 6 | 0.05 ± 0.13 | 0.06 ± 0.17 | 0.2 | 0.37 |
| ADC 9 × 9 | −0.13 ± 0.12 | 0.17 ± 0.12 | 0.08 | 0.66 |
| T2 9 × 9 | −0.03 ± 0.16 | 0.12 ± 0.10 | 0.48 | 0.43 |
| T1 9 × 9 | −0.20 ± 0.17 | 0.16 ± 0.18 | 0.5 | 0.56 |
Illustrating mean ± SEM value of the ADC map and T2- and T1-weighted images acquired from a first-order statistical analysis of kurtosis for ROIs containing non-tumors and significant tumors. p-values of differences between ROIs were computed using two-tailed Mann–Whitney U testing. The comparison between ROIs, including tumors and non-tumors, was assessed according to the area under the receiver operator characteristic curve (ROC-AUC) for mp-MRI TA parameters.
| Sequence | Non-Tumor | Significant Tumor (Mean ± SEM) | ROC-AUC | |
|---|---|---|---|---|
| ADC 3 × 3 | −0.72 ± 0.10 | −0.41 ± 0.22 | 0.37 | 0.58 |
| T2 3 × 3 | 0.13 ± 0.11 | 0.19 ± 0.15 | 0.6 | 0.55 |
| T1 3 × 3 | −0.57 ± 0.14 | 0.37 ± 0.40 | 0.46 | 0.57 |
| ADC 6 × 6 | −0.64 ± 0.16 | −0.47 ± 0.19 | 0.22 | 0.61 |
| T2 6 × 6 | −0.01 ± 0.24 | −0.34 ± 0.16 | 0.72 | 0.53 |
| T1 6 × 6 | 0.01 ± 0.19 | 0.22 ± 0.43 | 0.65 | 0.54 |
| ADC 9 × 9 | −0.78 ± 0.08 | −0.65 ± 0.10 | 0.81 | 0.52 |
| T2 9 × 9 | −0.09 ± 0.19 | −0.51 ± 0.14 | 0.82 | 0.47 |
| T1 9 × 9 | −0.08 ± −0.29 | −0.05 ± 0.45 | 0.56 | 0.55 |
Illustrating mean ± SEM value of the ADC map and T2- and T1-weighted images acquired from a first-order statistical analysis of entropy for ROIs containing non-tumors and significant tumors. p-values of differences between ROIs were computed using two-tailed Mann–Whitney U testing. The comparison between ROIs, including tumors and non-tumors, was assessed according to the area under the receiver operator characteristic curve (ROC-AUC) for mp-MRI TA parameters.
| Sequence | Non-Tumor | Significant Tumor (Mean ± SEM) | ROC-AUC | |
|---|---|---|---|---|
| ADC 3 × 3 | 4.09 ± 0.09 | 4.07 ± 0.15 | 0.84 | 0.48 |
| T2 3 × 3 | 6.25 ± 0.11 | 6.10 ± 0.22 | 0.75 | 0.46 |
| T1 3 × 3 | 5.61 ± 0.30 | 5.48 ± 0.31 | 0.71 | 0.53 |
| ADC 6 × 6 | 4.08 ± 0.09 | 4.15 ± 0.11 | 0.64 | 0.54 |
| T2 6 × 6 | 5.92 ± 0.12 | 5.86 ± 0.12 | 0.87 | 0.51 |
| T1 6 × 6 | 4.98 ± 0.31 | 4.85 ± 0.27 | 0.68 | 0.54 |
| ADC 9 × 9 | 4.02 ± 0.10 | 4.12 ± 0.11 | 0.54 | 0.55 |
| T2 9 × 9 | 5.72 ± 0.13 | 5.59 ± 0.16 | 0.56 | 0.55 |
| T1 9 × 9 | 4.58 ± 0.27 | 4.60 ± 0.24 | 0.89 | 0.48 |
Figure 3The best textural features from ROC curves and discernment of ROIs including significant tumors or non-tumor regions with AUC value.
Benjamini–Hochberg approach for false discovery rate (FDR) of p-values for all patients.
| Ranking | Adjusted | Rejected | |
|---|---|---|---|
| 1 | 0.001 | 0.001852 | 1 |
| 2 | 0.08000 | 0.003704 | 0 |
| 3 | 0.20000 | 0.005556 | 0 |
| 4 | 0.22000 | 0.007407 | 0 |
| 5 | 0.29000 | 0.009259 | 0 |
| 6 | 0.37000 | 0.011111 | 0 |
| 7 | 0.46000 | 0.012963 | 0 |
| 8 | 0.48000 | 0.014815 | 0 |
| 9 | 0.50000 | 0.016667 | 0 |
| 10 | 0.54000 | 0.018519 | 0 |
| 11 | 0.54000 | 0.020370 | 0 |
| 12 | 0.56000 | 0.022222 | 0 |
| 13 | 0.56000 | 0.024074 | 0 |
| 14 | 0.60000 | 0.025926 | 0 |
| 15 | 0.64000 | 0.027778 | 0 |
| 16 | 0.65000 | 0.029630 | 0 |
| 17 | 0.68000 | 0.031481 | 0 |
| 18 | 0.71000 | 0.033333 | 0 |
| 19 | 0.72000 | 0.035185 | 0 |
| 20 | 0.75000 | 0.037037 | 0 |
| 21 | 0.80000 | 0.038889 | 0 |
| 22 | 0.81000 | 0.040741 | 0 |
| 23 | 0.82000 | 0.042593 | 0 |
| 24 | 0.84000 | 0.044444 | 0 |
| 25 | 0.87000 | 0.046296 | 0 |
| 26 | 0.89000 | 0.048148 | 0 |
| 27 | 0.94000 | 0.050000 | 0 |