| Literature DB >> 35405024 |
Mamy Ngole1,2,3, Valerie Race1, Gloire Mbayabo1,2,4, Paul Lumbala1,2,4, Cathy Songo2, Prosper Tshilobo Lukusa1,2,4, Koenraad Devriendt1, Gert Matthijs1, Aimé Lumaka2,4,5.
Abstract
BACKGROUND: Hemoglobin-based tests form the reference diagnostic test for SCA. In limited resource countries, these tests face limitations including cost, low sensitivity due to recurrent transfusions in endemic malaria region, and interference from fetal hemoglobin in neonatal diagnostic. This study aimed at adapting DNA-based SCA tests to limited resource countries and evaluating the economic benefit.Entities:
Keywords: DNA based-tests; buccal swab; sickle cell anemia; umbilical cord blood; venous blood
Mesh:
Substances:
Year: 2022 PMID: 35405024 PMCID: PMC9102645 DOI: 10.1002/jcla.24398
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 3.124
FIGURE 1Sample collection, experimental design, and interpretation. A, Blood sample spotted onto FTA elute cards. Here are illustrated the full FTA card and two pieces of a split FTA card, all spotted with different samples. B, The figure shows the target PCR sequence. The two restriction sites sequences are underlined with a dashed line. The S mutation is located on the first restriction site. C, Pattern of restriction products on 2% agarose gel. Lane 1 to 8 shows homozygous mutation SS profiles, lane 9 shows homozygous wild type AA, lane 10 illustrates heterozygous AS, lane 11 contains a positive control, whereas lane 12 is the no DNA. The size ladder is on the L lane
Composition of the PCR Mix
| Solution | Amount per sample |
|---|---|
| Primer F + R (2.5 µm) | 2 µl |
| Amplification buffer (Roche) | 2 µl |
| dNTP’s 2mM | 2 µl |
| Taq DNA polymerase (5 U/µl) (Roche) | 0.1 µl |
| H2O | 12.9µl |
| Total volume | 19 µl |
Comparison of conditions and cost
| Salting out | FTA card | |
|---|---|---|
| Condition | ||
| Sample collection | EDTA tubes | FTA cards |
| Sample transport | RT | RT |
| DNA extraction | Yes | No |
| Storage | Freezer −20°C | RT |
| Turn‐around time (DNA extraction + PCR‐RFLP) | 24 h + 5 h | 5 h |
| Cost estimation | ||
| Consumables for sample collection and DNA purification | 2.3 € | 1.51€ (half a card/patient) |
| PCR reaction per sample | 2 € | 2 € |
| Restriction enzyme digestion | 1.2 € | 1.2 € |
| Gel electrophoresis | 0.8 € | 0.8 € |
| Equipment depreciation | 0.40 € | 0.10 € |
| Personnel cost | 4.85€ | 0.9 € |
| Total cost | 11.55 € | 6.51 € |
Abbreviations: NA, not applicable; RT, room temperature.
Based on cost estimation from Chacon‐Cortes et al.
Based on the average monthly salary of 500$ for a laboratory technician in DRC. The daily salary average is 25$ per day. The hourly salary is 25$/8 = 3.152 $. The hourly salary is based on the legal limit of 8 working hours a day. For the SO‐RFLP, the full run includes 16 samples. The hourly salary per sample is 3.125$/16 = 0.195$. For the 29 hours of the run, each sample costs 0.20$ × 29 = 5.8$ (4.85€) as personnel costs. For the FTA‐RFLP, the full run includes 14 samples. The hourly salary per sample is 3.1$/14 = 0.2$. For the 5 hours of the run, each sample costs 0.2$ × 5 = 1.0$ (0.9€) as personnel cost.
FIGURE 2Study algorithm and results. The top row presents the five institutions where participants were recruited; the second row shows the composition and specimens for the three cohorts; the third row indicates the two testing approaches applied to each of the cohort. The distribution of the genotypes obtained by either of the testing approaches for each cohort is presented at the bottom of the figure
FIGURE 3Restriction profile after 4 years of storage of some FTA Elute blood samples. Lane 1 to 8 shows homozygous mutation SS profiles, lanes 9 and 10 show heterozygous AS, lane 11 to 13 show homozygous SS, lane 14 represents wild‐type AA, lane 15 shows homozygous SS, lane 16 contains a positive control whereas lane 17 is the no DNA. The size ladder is on the L lane