Md S Azam1, Malcolm D Ranson1, Dennis K Hore1,2. 1. Department of Chemistry, 8205University of Victoria, Victoria, BC, Canada. 2. Department of Computer Science, 8205University of Victoria, Victoria, BC, Canada.
Abstract
We demonstrate a straightforward method by which a commonly available reference sample such as water can be used to calibrate an attenuated total internal reflection infrared absorbance measurement in order to account for the polarization of the beam incident on the internal reflecting element, and the spread of angles about the nominal angle of incidence. This enables quantitative comparison of attenuated total reflection-derived absorbance data with spectra calculated from optical constants. We then apply this calibration to the measurement of temperature-dependent absorption spectra of a polydimethylsiloxane sample. We illustrate that the extracted optical constants scale with the temperature-dependent changes in the polymer density better than the raw absorbance values on vibrational resonance.
We demonstrate a straightforward method by which a commonly available reference sample such as water can be used to calibrate an attenuated total internal reflection infrared absorbance measurement in order to account for the polarization of the beam incident on the internal reflecting element, and the spread of angles about the nominal angle of incidence. This enables quantitative comparison of attenuated total reflection-derived absorbance data with spectra calculated from optical constants. We then apply this calibration to the measurement of temperature-dependent absorption spectra of a polydimethylsiloxane sample. We illustrate that the extracted optical constants scale with the temperature-dependent changes in the polymer density better than the raw absorbance values on vibrational resonance.
The optical constants of materials are the fundamental properties necessary for a
wide range of applications in chemistry, physics, and materials science and
engineering. This also encompasses many situations in which the individual materials
may not be the target of interest, but the optical constants of all components of a
more complex system or device are needed to understand its function. There are many
methods that can be employed for such characterization, including
refractometry,[1,2]
reflectometry,[3-6]
and ellipsometry.[7-11] However, these measurements continue to be a challenge in the
mid-infrared primarily as a result of low-intensity uncollimated incoherent light
sources and more limited options for broadband polarization control. And yet the
infrared spectral region contains rich chemical information on a sub-molecular scale
on account of distinct vibrational resonances of localized chemical functional
groups. Another area of importance is the interconversion of different spectral
measurements, such as those in transmission- and reflection-based geometries. This
is particularly valuable in the utilization of infrared spectral libraries when
decomposing mixtures into constituent components or fitting absorption
lineshapes.[12-15]Although some of these shortcomings are poised to be overcome with the advent of
mid-infrared quantum cascade lasers[16,17] coupled with microbolometer
arrays,[18,19] Fourier transform infrared (FT-IR) instruments continue to be
the workhorse for laboratory, industrial, and field work. In recent years,
attenuated total internal reflection infrared (ATR-IR) spectroscopy has largely
taken over, and is either a common accessory or the standard configuration of many
FT-IR instruments.[20-22] This is primarily due to the convenience of being able to
sample materials that are large, irregularly-shaped, and thick/opaque without any
preparation, making use of the limited evanescent wave penetration to overcome the
path length restriction of transmission measurements. Although it is useful to
consider the evanescent wave penetration depth when the angle of incidence exceeds
the critical angle,[23] strictly speaking, the field is purely evanescent on the
rarer side of the internal reflecting element (IRE) only when the rarer medium is
transparent.[20] In ATR-IR, the goal is to study absorbing materials; the
imaginary part of the refractive index enables energy to be transferred into the
material thereby decreasing the reflectance in a manner that is eventually expressed
as absorbance. Several approaches make use of this phenomenon and the ATR
sensitivity to both the real and imaginary components of the refractive index to
determine the optical constants of materials,[24,25] including methods that
utilize unpolarized[26] and polarized light,[27] and the simultaneous use of
two orthogonal beam polarizations.[28] The general approach has been
to estimate the imaginary part of the index (often through an assumption that it is
proportional to the ATR absorbance for weak bands) and then perform an iterative
fitting to arrive at self-consistent solutions to the dispersion of the complex
refractive index that satisfy Kramers–Kronig relations. This approach has also been
extended to the characterization of aniostropic materials.[29,30]For IR transmission spectra, particularly for samples diluted in an IR-transparent
matrix such as KBr, the imaginary part of the refractive index is readily obtained
(albeit with altered local field effects) and can be related to the absorption
coefficient.[29,31] ATR-IR spectra, however, trade-off sample measurement
convenience for some additional complexity in the analysis. This is due primarily to
the fact that both the real and imaginary components of the refractive index
contribute to the ATR-IR line shape.[32] One method commonly employed
in the quantitative analysis of ATR-IR spectra is to consider the
frequency-dependent evanescent wave penetration depth, and then use this as the
effective sample thickness in a Beer-Lambert model.[33] The challenge is that, such
an approach still requires knowledge of the real part of the refractive index. A
further complication that impedes quantitative analysis of ATR-IR spectra is the
polarization of the input beam. This is largely irrelevant in a transmission
measurement at normal incidence. However, since reflection measurements are
performed at oblique incidence, the relative contributions of the s- and p-polarized
reflectance depends on the input beam polarization.[32] Even when using unpolarized
blackbody sources, the many reflections inside the spectrometer and inside the
ATR-IR accessory often impart a significant polarization to the beam incident on the
sample. This can be countered by the use of polarizers to control the input
polarization state, but at the expense of further reducing the incident beam
intensity. Finally, the reflectance in the vicinity of the critical angle is very
sensitive to the angle of incidence. The beam approaching the sample compartment in
an FT-IR instrument can have a diameter of up to several centimeters. This then
needs to be tightly focused to accommodate an IRE with an area of only a few square
millimeters. Previous studies have made use of this angle spread in order to vary
the evanescent wave penetration depth, particularly in ATR-IR imaging
experiments.[34-37]In this account, we describe a straightforward manner for calibrating the response of
any given ATR-IR setup using a commonly-available reference material in order to
characterize the input polarization state and beam divergence. We then use these
parameters to measure and model the ATR-IR spectra of a polymer as a function of
temperature. We illustrate that, although the absorbance decreases with increasing
temperature as expected when the density decreases, quantitative scaling is observed
only for the imaginary part of the refractive index itself, or the extracted
oscillator strength.
Methods
Polydimethylsiloxane (PDMS) films were prepared from a Sylgard-184 kit (Dow Corning)
on glass microscope slides (Fisherbrand Adhesion Slides, Thermo Fisher) that were
cleaned with acetone and oven dried (30 min at 100 °C) prior to use. PDMS part A
(base) and part B (curing agent) were well-mixed in a 10:1 ratio by stirring for 5
min. The mixture was then degassed by placing it in a vacuum desiccator for 30 min.
The glass slides were then spin-coated (Specialty Coating Systems, Inc) with the
as-prepared PDMS mixture at 1200 rpm for 1 min. The samples were then cured at 85 °C
for 4 h. This procedure resulted in films with a nominal thickness of 10
μm.[38]After curing, the samples were placed PDMS side down onto a single-bounce diamond 45°
internal reflecting element installed in an FT-IR (Bruker Vertex 70) fitted with a
KBr beamsplitter and DTGS detector. The ATR accessory (Pike GladiATR) enabled
temperature control from ambient to 200 °C. Each spectrum was collected as a
co-addition of 64 interferograms with a 2.5 kHz scanner velocity. A Mertz phase
correction was applied and a Blackman-Harris three-term apodization function was
used. Background measurements (of the IRE–air interface) were taken at each
temperature in order to remove temperature-dependent artifacts.[39] Such spectral
processing, that requires reading background and sample spectra from different
files, was facilitated by the OpusFC python library.[40]For the instrument calibration, 18.2 MΩ⋅cm deionized water and anhydrous ethanol
(Sigma Aldrich) were used, together with established optical constants from the
literature.[41,42]
Basic Concepts and Film Thickness Considerations
In contrast to the absorptance, the quantity absorbance lacks a consistent
definition, as it is obtained with respect to some kind of reference spectrum. In
general the absorbance is obtained fromwhere R is the reflectance, the
ratio of the intensity of the reflected light I to that of the
incident light I0. The choice of reference depends on
the intent of the experiment. For example, for aqueous samples, water is often
chosen. If we consider the ratio of light reflected with the sample on the IRE
compared to the reference state of no sample (IRE–air interface),we can see that a measurement of the incident
light intensity I0 is not required. However, as Eq. 1
involves the Fresnel reflection coefficients r, knowledge of the
incident angle and beam polarization is required. If we consider light polarized
with the electric field parallel (p) and perpendicular (s) to the plane of
incidence, the Fresnel coefficients are given bywhere n1 is the
refractive index of the incident material (the IRE) in this case and
is the complex refractive index of the sample when measuring
Isample and the (real) refractive index of air when
measuring Iref. Here, we use the notation for the
complex index .
Since a good IRE is essentially transparent, .
For the reference (air) measurements, we assume .
In the above expression, θ1 is the incident angle at the IRE–sample or
IRE–air interface, and θ2 is the refracted angle.When performing measurements on thin films in the typical range of thickness obtained
by spin coating polymers (50 nm–10 μm) thin film interference effects need to be
considered. Two approaches are possible. One is to explicitly model the interference
using precise knowledge of the film thickness (as obtained by profilometry or atomic
force microscopy). This is straightforward, and many approaches have been described
in the literature.[43,44] A particularly compact route is to use a transfer matrix in the
form ofwhere
for s-polarized light,
for p-polarized light,[45,46] and θ2 is the refracted angle. The quantity
β2 = 2πdp2/λ
incorporates the phase difference in propagation through the film. This enables the
Fresnel reflection coefficients introduced in Eqs. 3a and 3b to be
replaced withwhere p1 and
p3 are defined in an analogous manner to
p2 as described above. The reflectance is then
obtained from R = |r|2 in the usual way
and the absorbance can be calculated when the reflectance of the sample and
reference are compared.Another option is to prepare films that are sufficiently thick or thin, thus
simplifying the analysis. Fig.
1 plots the expected absorbance calculated using the transfer matrix
described above with literature values of
and a nominal angle of incidence of θ1 = 45°; the refracted angle
θ2 is determined from Snell’s law. Even though the literature
refractive index data may not exactly match our PDMS sample, a few conclusions can
be made. In the case of the free-standing films placed directly on the IRE
(IRE1–film2–air3, with
= 1), Fig. 1a indicates
that interference effects can be ignored when the film thickness exceeds
approximately 2 μm. In our case, since we work with thinner
samples, the films are first spin-coated onto glass substrates
(IRE1–film2–glass3–air4, with glass
data from the literature[47]), and so Fig. 1b indicates that for PDMS thicknesses greater than 1
μm, such modeling is not necessary. The other conclusion from
this modeling is that, for sufficiently thin films (less than about 50 nm) a simpler
model of absorbance may be employed, but we will not elaborate on that point
here.
Figure
1.
Absorbance as a function of film thickness for a (a)
diamond–PDMS–air and (b) diamond–PDMS–glass
system.
We also note the significant difference in the behavior of s- and p-polarized beams.
If it has been verified that the polarization incident on the IRE is random (seldom
the case), the unpolarized absorbance can be determined by using
in place of Rsample and Rref
in Eq.
1.Absorbance as a function of film thickness for a (a)
diamond–PDMS–air and (b) diamond–PDMS–glass
system.
Results and Discussion
Determination of ATR-IR Experimental Parameters
Figure. 2a provides a
comparison between the unpolarized absorbance spectrum predicted from Eq. 1
using literature complex refractive index for water (orange trace) and our
measured spectrum (gray dots). To facilitate subsequent fitting, we have omitted
data in the 3300 cm−1 and 2350 cm−1 regions on account of
the noise due to background correction artifacts resulting from atmospheric
water vapor and carbon dioxide.
Figure 2.
(a)
Determination of the instrument parameters (input polarization, and
spread of beam angles) using literature n and
k values for water and our measured absorbance
spectrum. (b) Application of these values, comparing our measured
with the predicted absorbance spectrum of ethanol. In both cases,
experimental data points in the atmospheric water bending and
stretching modes have been removed for the data fitting so that
noise in the absorbance does not influence the
parameterization.
Although the spectral features are similar, the quantitative agreement is poor
for two reasons. The first is that it is an unreasonable assumption that the IR
beam is randomly polarized, on account of the many reflection that occur inside
the FT-IR and within the ATR accessory. If we define the fraction of the
incident beam that is s-polarized as f, then Eq. 1
should be adapted to consider(a)
Determination of the instrument parameters (input polarization, and
spread of beam angles) using literature n and
k values for water and our measured absorbance
spectrum. (b) Application of these values, comparing our measured
with the predicted absorbance spectrum of ethanol. In both cases,
experimental data points in the atmospheric water bending and
stretching modes have been removed for the data fitting so that
noise in the absorbance does not influence the
parameterization.Using the literature values for n2 and
k2 for water, we fit our experimental data to
determine the best value for f to minimize the residual,
resulting in f = 0.32 (green trace in Fig. 2a). One can see that the agreement
has vastly improved, but this should be a quantitative comparison. We next
consider that, due to focusing of the IR beam onto the sample, there is a
distribution of angles about the nominal θ1 = 45°.[48,49] We
consider a Gaussian distribution of angleswith a full width at the half maximum value
of σ and the normalization constant is defined asFitting to this two-parameter model returned f = 0.33 and σ =
4.7°, and resulted in a quantitative agreement with the experimental data (Fig. 2a, red trace). One
notices that the improvement offered by the spread of beam angles is minor in
some parts of the spectrum, but offers noticeable improvements in others such as
the 3000 cm−1 and 1200 cm−1 regions.In order to demonstrate the applicability of these parameters determined for our
instrument, we measure the IR spectrum of another liquid, ethanol, that has
substantially different
in the mid-IR, and compare with the absorbance we calculate from literature
index data in the same spectral region, using the same values of
f and σ that we have previously determined for water. The
results presented in Fig.
2b show very good quantitative agreement. This method is quick to
perform on any instrument. We have used water for the calibration: The ideal
reference sample is a liquid, since good contact with the IRE is ensured, and
one for which the literature n2 and
k2 values have been determined simultaneously
and independently through a robust method, such as spectroscopic ellipsometry.
This is preferable to data sets where n2 has been
determined from experimental k2 from fitting or
Kramers–Kronig approaches, as there are additional approximations inherent in
such calculations. It is also desirable that k be sufficiently
large across a wide range of wavelengths.
Determination of PDMS Complex Refractive Index in the C–H Stretching
Region
Figure. 3a shows the
absorbance measured from our PDMS film at room temperature (experimental data
plotted in points). The high frequency region consists of two modes, the methyl
symmetric stretch near 2910 cm−1 and the methyl antisymmetric
stretching near 2960 cm−1.
Figure 3.
(a) Measured
(points) and fit value (lines) of the PDMS absorbance spectrum using
the Lorentz oscillator model defined in Eq. 9. This results in the (b) real and (c) imaginary
components of refractive index, plot in lines based on the model fit
parameters. For comparison, the literature n and
k values are superimposed in points (panels b
and c), although these are not necessary from the same type of
sample.
(a) Measured
(points) and fit value (lines) of the PDMS absorbance spectrum using
the Lorentz oscillator model defined in Eq. 9. This results in the (b) real and (c) imaginary
components of refractive index, plot in lines based on the model fit
parameters. For comparison, the literature n and
k values are superimposed in points (panels b
and c), although these are not necessary from the same type of
sample.Since this region of the spectrum, of interest to us for related surface studies,
is so simple, we can easily use a two-oscillator model for the material
susceptibility function χ that relates the dipole moment per
unit volume P to the electric portion E of the
infrared electromagnetic field through P =
ɛ0χE. We use a Lorentz
model[50]where ANR is a
vibrationally non-resonant contribution to the susceptibility, ,
A1 and A2 are the
amplitudes, ω1 and ω2
the resonance frequencies, and Γ1 and Γ2 the linewidths
(HWHM) of the methyl symmetric and antisymmetric stretching modes. The
frequency-dependent complex refractive index of PDMS in this spectral region is
then given byThe seven parameters in Eq. 9 then enable the PDMS
refractive index to be determined via Eq. 10. The fitting works by
comparing with the experimental absorbance spectrum through knowledge of the
previously characterized instrument parameters f and σ. A
scheme of the overall procedure is provided in Fig. 4. Historical approaches to
determining the optical constants from ATR-IR measurements typically use an
iterative procedure to fine tune the optical constants using a Kramers–Kronig
constraint. In our approach, such a constraint is not required as we start with
a Lorentz model expression that inherently satisfies the Kramers–Kronig
condition.
Figure
4.
A Lorentz model (Eq. 9) describing
each of the resonant modes is constructed and used to determine the
complex refractive index via Eq. 10. The
distribution of beam angles (Eq. 7) is then used
to evaluate the reflection coefficients, including possible thin
film interference if appropriate. Finally, the reflectance of the
sample and reference (air) is determined using the polarization of
the beam (f parameter) to ultimately arrive at the
absorbance (Eq.
1).
A Lorentz model (Eq. 9) describing
each of the resonant modes is constructed and used to determine the
complex refractive index via Eq. 10. The
distribution of beam angles (Eq. 7) is then used
to evaluate the reflection coefficients, including possible thin
film interference if appropriate. Finally, the reflectance of the
sample and reference (air) is determined using the polarization of
the beam (f parameter) to ultimately arrive at the
absorbance (Eq.
1).A truncated Newton’s algorithm was used to find best fit values of the Lorentz
model parameters and resulted in ANR = 0.943,
A1 = 0.159, A2 =
1.19, ω1 = 2906 cm−1, ω2 = 2964
cm−1, Γ1 = Γ2 = 9 cm−1 to produce
the line plotted in Fig.
3a. Once these seven material parameters have been determined, Eqs. 9
and 10 can be used to plot n2 and
k2 (lines in Figs. 3b and 3c). Although our PDMS
sample is not necessarily the same as that for which optical constants are
reported in the literature (there is the possibility of minor differences in
cross linking agents and ratios of components), published values of
n2 and k2 are
plotted (points in Figs. 3b
and 3c) for comparison. Even though this comparison may not be fully
quantitative, we can see that, after the instrument response is calibrated, this
method can be used to determine the refractive index of such samples.Although the samples we have studied are sufficiently thick to avoid the need of
explicit thin film interference modeling, an intriguing possibility for the
approach we have outlined is that thin samples are handled just as easily. The
basis of our model is the connection between optical constants (obtained from
the dispersion of the susceptibility) and the reflectance using the polarization
bias and spread of beam angles. Therefore the reflectance calculated via the
transfer matrix approach would also incorporate f and σ in a
straightforward way, if needed, as shown in the second step in Fig. 4.
Temperature-Dependence of the PDMS Infrared Optical Properties
Using the same PDMS sample, spectra were recorded as a function of temperature in
the range 25–145°C in steps of 15 °C and displayed in Fig. 5 (points), together with a fit to
Eq.
9 (lines). An investigation of the temperature-dependence of the
methyl symmetric and antisymmetric resonance frequency revealed tightly
clustered values with no temperature trend. As a result, Γ1 and
Γ2 were fixed to the mean values of 9 cm−1.
Figure
5.
Absorbance spectra obtained upon heating the
thick PDMS film, with experimental data plotted in points, and a fit
to Eq. 9 plotted with
lines.
Absorbance spectra obtained upon heating the
thick PDMS film, with experimental data plotted in points, and a fit
to Eq. 9 plotted with
lines.We now plot the temperature-dependence of the absorbance at 2964 cm−1
in Fig. 6 with red
circles. Superimposed on the data are the Lorentz amplitudes (blue circles) with
error bars determined based on the covariance of the fitting parameters in Eq. 9,
and the imaginary part of the refractive index (green points) obtained from
Eq.
10. To illustrate the trend in these values with temperature, we have
performed linear fits, displayed with solid lines of the corresponding colors.
We then compare these trends with the temperature-dependence of the
density,[51,52] displayed with the black line. In order to highlight
the degree to which these features change with temperature, Fig. 6 plots all quantities normalized
to their value at 25°C.
Figure 6.
Absorbance values (red), fit
amplitudes of the 2964 cm−1 mode (blue) with error bars
based on the covariance of the fitting parameters, modeled imaginary
part k of the refractive index (green), all
normalized with respect to their values at 25°C. Corresponding solid
lines are linear fits to the normalized quantities. The density
(normalized to its value at 25°C is plotted in black.[52] For comparison, values of A
and k determined without considering the spread of
beam angles are plotted with dashed lines of the same
color.
Absorbance values (red), fit
amplitudes of the 2964 cm−1 mode (blue) with error bars
based on the covariance of the fitting parameters, modeled imaginary
part k of the refractive index (green), all
normalized with respect to their values at 25°C. Corresponding solid
lines are linear fits to the normalized quantities. The density
(normalized to its value at 25°C is plotted in black.[52] For comparison, values of A
and k determined without considering the spread of
beam angles are plotted with dashed lines of the same
color.The oscillator strength, determined by a combination of the transition dipole
moment and the local field effects in the condensed medium, is represented by
the amplitude A in Eq. 9. Furthermore, for weak
oscillators, as is typical of organic materials in the mid-infrared, the shape
of the susceptibility function should closely match the absorption coefficient.
However, ATR-IR data generally does not allow the optical constants to be
separated in the same way that k can be obtained from a
transmission measurement using an appropriate reference sample. The consequence
is that both n and k contribute to the
absorbance. It is generally understood that, when there is no significant change
in phase or molecular interactions, optical properties scale with
density.[53] Our results indicate that, when k is
extracted, this is indeed the case, owing to the close agreement in the ≈10%
drop in both quantities over the studied temperature range. We also see that the
susceptibility on resonance (blue trace in Fig. 6), follows roughly the same trend
as one would expect. However, as a result of the nature of an ATR-IR experiment
the absorbance itself, although it follows the same downward trend with the
increase of temperature, is not as good a proxy for the density change, as it
drops by nearly 60% in this interval. The large difference in the temperature
trends of the absorbance and k is due to a combination of the
temperature-dependent non-resonant contribution to the susceptibility and the
spread of beam angles. When either the non-resonant/resonant ratio or the spread
of angles decreases, the red and blue/green lines are closer together. It is
also noteworthy that, under the present conditions, the
spread results in the largest deviation between these quantities. As σ
increases, the agreement improves. It also is interesting to compare the results
of this analysis to what would be obtained by neglecting the spread of beam
angles. The resulting amplitudes and extracted imaginary part of the refractive
index are indicated by dashed blue and dashed green lines, respectively, in
Fig. 6. Here, we
see that the amplitude and k are in closer agreement, as one
would expect for a relatively isolated mode on resonance. However, the trend in
the optical constant k does not agree as well with the density
trend as when the spread of beam angles is considered.One potential limitation of this method is that it requires spectral fitting and
the inherent lineshape modeling. In the example we presented, this was
straightforward as we had only two bands in a small wavenumber region. When the
spectral region of interest widens, it becomes increasingly likely that one
encounters many vibrational modes including ones that are overlapping. The
proposed approach should still work, however, as it is routine to fit congested
spectra in mid-infrared spectroscopic ellipsometry with a large number of
modes.[54]
Conclusion
We have illustrated a straightforward way to perform an ATR-IR experiment with an
uncontrolled input polarization state and uncharacterized beam focusing parameters,
and still make a connection to the optical constants of materials. The instrument
characterization is carried out using a simple optical model and a
commonly-available reference sample. As an application of this method, we have
collected ATR-IR spectra of polydimethylsiloxane as a function of temperature and
found that the absorption coefficient, when extracted from a fit to the data,
matches the density change as expected. This type of analysis is enabled by
restoring the relationship between the ATR-IR absorbance and the material optical
constants.