Literature DB >> 35341855

A regression-based QSAR-model to predict acute toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica): Calibration, validation, and future developments to support risk assessment of chemicals in amphibians.

Andrey A Toropov1, Matteo R Di Nicola2, Alla P Toropova3, Alessandra Roncaglioni4, Edoardo Carnesecchi5, Nynke I Kramer6, Antony J Williams7, Manuel E Ortiz-Santaliestra8, Emilio Benfenati9, Jean-Lou C M Dorne10.   

Abstract

Amphibian populations are undergoing a global decline worldwide. Such decline has been attributed to their unique physiology, ecology, and exposure to multiple stressors including chemicals, temperature, and biological hazards such as fungi of the Batrachochytrium genus, viruses such as Ranavirus, and habitat reduction. There are limited toxicity data for chemicals available for amphibians and few quantitative structure-activity relationship (QSAR) models have been developed and are publicly available. Such QSARs provide important tools to assess the toxicity of chemicals particularly in a data poor context. QSARs provide important tools to assess the toxicity of chemicals particularly when no toxicological data are available. This manuscript provides a description and validation of a regression-based QSAR model to predict, in a quantitative manner, acute lethal toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica). QSAR models for acute median lethal molar concentrations (LC50-12 h) of waterborne chemicals using the Monte Carlo method were developed. The statistical characteristics of the QSARs were described as average values obtained from five random distributions into training and validation sets. Predictions from the model gave satisfactory results for the overall training set (R2 = 0.72 and RMSE = 0.33) and were even more robust for the validation set (R2 = 0.96 and RMSE = 0.11). Further development of QSAR models in amphibians, particularly for other life stages and species, are discussed.
Copyright © 2022 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Acute toxicity; Index of ideality of correlation; Monte Carlo method; QSAR; Rana japonica tadpole

Mesh:

Year:  2022        PMID: 35341855      PMCID: PMC9535814          DOI: 10.1016/j.scitotenv.2022.154795

Source DB:  PubMed          Journal:  Sci Total Environ        ISSN: 0048-9697            Impact factor:   10.753


  26 in total

1.  Acute toxicity of substituted phenols to Rana japonica tadpoles and mechanism-based quantitative structure-activity relationship (QSAR) study.

Authors:  X Wang; Y Dong; L Wang; S Han
Journal:  Chemosphere       Date:  2001-07       Impact factor: 7.086

2.  QSAR for prediction of joint toxicity of substituted phenols to tadpoles (Rana japonica).

Authors:  H Huang; X Wang; Y Shao; D Chen; X Dai; L Wang
Journal:  Bull Environ Contam Toxicol       Date:  2003-12       Impact factor: 2.151

3.  QSAR study on tadpole narcosis using PI index: a case of heterogenous set of compounds.

Authors:  Mona Jaiswal; Padmakar Khadikar
Journal:  Bioorg Med Chem       Date:  2004-04-01       Impact factor: 3.641

Review 4.  Using theoretical descriptors in quantitative structure-activity relationships: some toxicological indices.

Authors:  L Y Wilson; G R Famini
Journal:  J Med Chem       Date:  1991-05       Impact factor: 7.446

5.  QSTR with extended topochemical atom (ETA) indices. VI. Acute toxicity of benzene derivatives to tadpoles (Rana japonica).

Authors:  Kunal Roy; Gopinath Ghosh
Journal:  J Mol Model       Date:  2005-10-26       Impact factor: 1.810

6.  'Dynamic' QSAR for semicarbazide-induced mortality in frog embryos.

Authors:  O G Mekenyan; T W Schultz; G D Veith; V Kamenska
Journal:  J Appl Toxicol       Date:  1996 Jul-Aug       Impact factor: 3.446

7.  Scientific Opinion on the state of the science on pesticide risk assessment for amphibians and reptiles.

Authors:  Colin Ockleford; Paulien Adriaanse; Philippe Berny; Theodorus Brock; Sabine Duquesne; Sandro Grilli; Antonio F Hernandez-Jerez; Susanne Hougaard Bennekou; Michael Klein; Thomas Kuhl; Ryszard Laskowski; Kyriaki Machera; Olavi Pelkonen; Silvia Pieper; Michael Stemmer; Ingvar Sundh; Ivana Teodorovic; Aaldrik Tiktak; Chris J Topping; Gerrit Wolterink; Annette Aldrich; Cecilia Berg; Manuel Ortiz-Santaliestra; Scott Weir; Franz Streissl; Robert H Smith
Journal:  EFSA J       Date:  2018-02-23

8.  The rm2 metrics and regression through origin approach: reliable and useful validation tools for predictive QSAR models (Commentary on 'Is regression through origin useful in external validation of QSAR models?').

Authors:  Kunal Roy; Supratik Kar
Journal:  Eur J Pharm Sci       Date:  2014-05-29       Impact factor: 4.384

9.  Toxicity of some prevalent organic chemicals to tadpoles and comparison with toxicity to fish based on mode of toxic action.

Authors:  Shuo Wang; Li C Yan; Shan S Zheng; Tian T Li; Ling Y Fan; Tao Huang; Chao Li; Yuan H Zhao
Journal:  Ecotoxicol Environ Saf       Date:  2018-10-11       Impact factor: 6.291

10.  The using of the Index of Ideality of Correlation (IIC) to improve predictive potential of models of water solubility for pesticides.

Authors:  Alla P Toropova; Andrey A Toropov; Edoardo Carnesecchi; Emilio Benfenati; Jean Lou Dorne
Journal:  Environ Sci Pollut Res Int       Date:  2020-02-04       Impact factor: 4.223

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