| Literature DB >> 35317687 |
Jiang Yu1,2, Wenfeng Gou1, Haihua Shang1, Yating Cui1, Xiao Sun1, Lingling Luo1, Wenbin Hou1, Tiemin Sun2, Yiliang Li1.
Abstract
The poly (ADP-ribose) polymerase (PARP) inhibitors play a crucial role in cancer therapy. However, most approved PARP inhibitors cannot cross the blood-brain barrier, thus limiting their application in the central nervous system. Here, 55 benzodiazepines were designed and synthesised to screen brain penetrating PARP-1 inhibitors. All target compounds were evaluated for their PARP-1 inhibition activity, and compounds with better activity were selected for further assays in vitro. Among them, compounds H34, H42, H48, and H52 displayed acceptable inhibition effects on breast cancer cells. Also, computational prediction together with the permeability assays in vitro and in vivo proved that the benzodiazepine PARP-1 inhibitors we synthesised were brain permeable. Compound H52 exhibited a B/P ratio of 40 times higher than that of Rucaparib and would be selected to develop its potential use in neurodegenerative diseases. Our study provided potential lead compounds and design strategies for the development of brain penetrating PARP-1 inhibitors.HIGHLIGHTSStructural fusion was used to screen brain penetrating PARP-1 inhibitors.55 benzodiazepines were evaluated for their PARP-1 inhibition activity.Four compounds displayed acceptable inhibition effects on breast cancer cells.The benzodiazepine PARP-1 inhibitors were proved to be brain permeable.Entities:
Keywords: CNS; PARP-1 inhibitor; Rucaparib; benzodiazepine; cancer
Mesh:
Substances:
Year: 2022 PMID: 35317687 PMCID: PMC8942544 DOI: 10.1080/14756366.2022.2053524
Source DB: PubMed Journal: J Enzyme Inhib Med Chem ISSN: 1475-6366 Impact factor: 5.051
Figure 1.Approved PARP-1/2 inhibitors and representative benzodiazepine drugs.
Figure 2.(A) Binding mode of PARP-1 inhibitors. (B) Drug design strategy.
Figure 3.(A) Predicted binding mode of H4 with PARP-1. (B) 2D diagram of H4 interacting with PARP-1. The catalytic domain structure of PARP-1 is coloured in cyan (crystal structure: PARP-1 PDB code 4zzz). Compounds and the key residues within the binding pocket are shown as sticks and coloured in yellow and green, respectively. Hydrogen bonds are shown as yellow and the distances (Å) of H-bonds are also labelled. The molecular docking was accomplished using Glide flexible docking. The 3D images were prepared with PyMOL, and the 2D picture was drawn in Discovery Studio.
Scheme 1.Synthetic route of compounds H4–H27.
Scheme 2.Synthetic route of compounds H28–H31.
Scheme 3.Synthetic route of compounds H32–H55.
The chemical structures and inhibitory activities of compounds H1–H19.
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aThe inhibition (%) was evaluated at the compound concentration of 50 nM and values were calculated from the results of three independent tests.
The chemical structures and inhibitory activities of compounds H20–H31.
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aThe inhibition (%) was evaluated at the compound concentration of 50 nM and values were calculated from the results of three independent tests.
The chemical structures and inhibitory activities of compounds H32–H46.
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aThe inhibition (%) was evaluated at the compound concentration of 50 nM and values were calculated from the results of three independent tests.
The chemical structures and inhibitory activities of compounds H47–H55.
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aThe inhibition (%) was evaluated at the compound concentration of 50 nM and values were calculated from the results of three independent tests.
IC50 values of compounds H34, H42, H48, H50, and H52 against PARP-1
| Compound | IC50 (nM) | Compound | IC50 (nM) | ||
|---|---|---|---|---|---|
| PARP-1 | PARP-2 | PARP-1 | PARP-2 | ||
| Rucaparib | 0.97 | 1.82 |
| 37.8 | 40.7 |
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| 41.4 | 51.2 |
| 46.3 | 45.1 |
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| 40.3 | 47.1 |
| 30.2 | 39.6 |
Figure 4.Predicted binding poses of compounds with PARP-1 (A: H34, B: H42, C: H48, D: H50, E: H52). The catalytic domain structure of PARP-1 is coloured in cyan (crystal structure: PARP-1 PDB code 4zzz). Compounds and the key residues within the binding pocket are shown as sticks and coloured in yellow and green, respectively. Hydrogen bonds are shown as yellow and the distances (Å) of H-bonds are also labelled. The molecular docking was accomplished using Glide flexible docking. The 3D images were prepared with PyMOL.
Antiproliferation activity of compounds H34, H42, H48, H50, and H52 in tumour cell lines.
| Compound | IC50 (μM) | ||
|---|---|---|---|
| MX-1(BRCA1-)a | MCF7b | A549c | |
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| 40.3 ± 3.3 | 44.3 ± 5.2 | 120.7 ± 16.2 |
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| 31.4 ± 2.8 | 39.4 ± 4.2 | 162.4 ± 18.4 |
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| 30.7 ± 4.0 | 35.7 ± 2.9 | 176.4 ± 23.1 |
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| 130.2 ± 10.7 | 125.3 ± 13.2 | >200 |
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| 24.6 ± 3.7 | 37.9 ± 3.5 | 157.1 ± 15.2 |
| Rucaparib | 5.5 ± 2.2 | 20.2 ± 3.1 | 34.9 ± 5.2 |
aBreast cancer cell line.
bBreast cancer cell line.
cLung cancer cell line.
Predicted ADME properties of compounds H34, H42, H48, and H52.
| Compound | PSA | QPlogPo/w | CNS | QPlogBB | QPPMDCK | QPPCaco |
|---|---|---|---|---|---|---|
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| 87.69 | 3.32 | −1 | −0.86 | 201 | 434 |
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| 65.94 | 4.37 | 0 | −0.43 | 782 | 1528 |
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| 78.38 | 2.99 | −2 | −1.04 | 159 | 350 |
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| 52.08 | 4.96 | 0 | −0.13 | 2992 | 1342 |
| Rucaparib | 68.26 | 2.80 | 0 | −0.15 | 182.86 | 211.03 |
| Standard range | 7.0–200.0 | −2.0–6.5 | −2 to +2 | −3.0–1.2 | <25 poor, >500 great | <25 poor, >500 great |
MDCK cell permeability of compounds H34, H42, H48, and H52.
| Compound | |||
|---|---|---|---|
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| 1.65 ± 0.32 | 0.31 ± 0.08 | 15.7 ± 1.32 |
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| 1.62 ± 0.37 | 0.33 ± 0.05 | 16.1 ± 1.08 |
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| 2.43 ± 0.42 | 0.23 ± 0.06 | 11.7 ± 0.51 |
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| 1.65 ± 0.05 | 0.45 ± 0.07 | 19.7 ± 0.92 |
| Rucaparib | 3.39 ± 0.82 | ND | – |
ND: not detected.
aThe concentration of compounds in the apical compartment.
bThe concentration of compounds in the basolateral compartment.
cPapp (A→B) = (ΔQ/Δt)/(A·C0), the detailed information is displayed in the experiment section.
Brain penetration study for compounds H34, H42, H48, and H52a.
| Compound | Time (min) | Plasma (ng/mL) | Brain (ng/g) | B/P ratio (fold) |
|---|---|---|---|---|
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| 5 | 3124.95 ± 220.45 | 300.68 ± 52.51 | 0.10 ± 0.01 |
| 60 | 1054.90 ± 70.31 | 9.67 ± 8.75 | 0.01 ± 0.01 | |
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| 5 | 554.97 ± 104.39 | 1816.17 ± 323.95 | 3.28 ± 0.28 |
| 60 | 15.07 ± 5.44 | 51.83 ± 13.62 | 3.58 ± 0.53 | |
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| 5 | 2645.17 ± 264.07 | 1051.48 ± 153.23 | 0.40 ± 0.05 |
| 60 | 157.38 ± 32.30 | 10.05 ± 0.87 | 0.07 ± 0.02 | |
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| 5 | 718.73 ± 39.93 | 1571.63 ± 264.39 | 2.18 ± 0.27 |
| 60 | 597.12 ± 24.96 | 2633.52 ± 118.5 | 4.41 ± 0.07 | |
| Rucaparib | 5 | 1175.43 ± 121.86 | 169.73 ± 48.50 | 0.14 ± 0.04 |
| 60 | 160.75 ± 60.49 | 13.93 ± 3.78 | 0.10 ± 0.06 |
aThe samples were collected at 5 and 60 min after tail vein injection of 1.5 mg/kg compounds in ICR mice. The results are depicted as the mean ± SD of six independent experiments.
Figure 5.The cytotoxicity of H42 and H52 in combination with TMZ in glioblastoma (U87) cells. TMZ: Temozolomide; RU: Rucaparib.