Literature DB >> 35316386

Development of SSR and SNP markers for identifying opium poppy.

Yanjun Zhang1, Jing Wang1,2, Lulu Yang1,3, Jiaxin Niu1,4, Ruoqi Huang1,4, Fang Yuan1, Qiong Liang5.   

Abstract

Papaver somniferum L. (opium poppy) is the original plant of heroin, which is a major narcotic drug, and this plant has brought great harm to human health. However, the ban on opium poppy cultivation and trafficking is facing great challenges because of abnormal profits. Therefore, rapid and accurate identification is important to address the abovementioned problems. In this study, eleven simple sequence repeats (SSR) markers and two single nucleotide polymorphism (SNP) markers were mined to distinguish opium poppy from other six Papaver species. These molecular markers were further verified through a large number of plant materials of these seven Papaver species. An excellent multiplex polymerase chain reaction (PCR) system that simultaneously amplifies the three of eleven SSR markers was developed, which effectively improves the efficiency and speed of identification. The present research is of great implication for identifying and investigating the illegal cultivation and trafficking of opium poppy.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Papaver somniferum L.; SNP; SSR; Species identification

Mesh:

Substances:

Year:  2022        PMID: 35316386     DOI: 10.1007/s00414-022-02810-4

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.791


  5 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  An assessment of the utility of universal and specific genetic markers for opium poppy identification.

Authors:  Eun J Lee; In K Hwang; Nam Y Kim; Kyung L Lee; Myun S Han; Yang H Lee; Mu Y Kim; Moon S Yang
Journal:  J Forensic Sci       Date:  2010-09       Impact factor: 1.832

3.  Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

Authors:  T Thiel; W Michalek; R K Varshney; A Graner
Journal:  Theor Appl Genet       Date:  2002-09-14       Impact factor: 5.699

4.  Exploiting expressed sequence tag databases for the development and characterization of gene-derived simple sequence repeat markers in the opium poppy (Papaver somniferum L.) for forensic applications.

Authors:  Eun Jung Lee; Gang Nam Jin; Kyung Lyong Lee; Myun Soo Han; Yang Han Lee; Moon Sik Yang
Journal:  J Forensic Sci       Date:  2011-05-19       Impact factor: 1.832

5.  The opium poppy genome and morphinan production.

Authors:  Li Guo; Thilo Winzer; Xiaofei Yang; Yi Li; Zemin Ning; Zhesi He; Roxana Teodor; Ying Lu; Tim A Bowser; Ian A Graham; Kai Ye
Journal:  Science       Date:  2018-08-30       Impact factor: 47.728

  5 in total
  1 in total

1.  Genetic Diversity and Population Structure of Fusarium commune Causing Strawberry Root Rot in Southcentral China.

Authors:  Yunlu He; Jia Chen; Chao Tang; Qiao Deng; Litao Guo; Yi Cheng; Zhimin Li; Tuhong Wang; Jianping Xu; Chunsheng Gao
Journal:  Genes (Basel)       Date:  2022-05-18       Impact factor: 4.141

  1 in total

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