Literature DB >> 35308987

Outcome Prediction from Behaviour Change Intervention Evaluations using a Combination of Node and Word Embedding.

Debasis Ganguly1, Martin Gleize1, Yufang Hou1, Charles Jochim1, Francesca Bonin1, Alessandra Pascale1, Pierpaolo Tommasi1, Pol Mac Aonghusa1, Robert West2, Marie Johnston3, Mike Kelly4, Susan Michie2.   

Abstract

Findings from randomized controlled trials (RCTs) of behaviour change interventions encode much of our knowledge on intervention efficacy under defined conditions. Predicting outcomes of novel interventions in novel conditions can be challenging, as can predicting differences in outcomes between different interventions or different conditions. To predict outcomes from RCTs, we propose a generic framework of combining the information from two sources - i) the instances (comprised of surrounding text and their numeric values) of relevant attributes, namely the intervention, setting and population characteristics of a study, and ii) abstract representation of the categories of these attributes themselves. We demonstrate that this way of encoding both the information about an attribute and its value when used as an embedding layer within a standard deep sequence modeling setup improves the outcome prediction effectiveness. ©2021 AMIA - All rights reserved.

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Year:  2022        PMID: 35308987      PMCID: PMC8861683     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  23 in total

1.  Query-oriented evidence extraction to support evidence-based medicine practice.

Authors:  Abeed Sarker; Diego Mollá; Cecile Paris
Journal:  J Biomed Inform       Date:  2015-12-02       Impact factor: 6.317

2.  Framewise phoneme classification with bidirectional LSTM and other neural network architectures.

Authors:  Alex Graves; Jürgen Schmidhuber
Journal:  Neural Netw       Date:  2005 Jun-Jul

3.  Evaluation of PICO as a knowledge representation for clinical questions.

Authors:  Xiaoli Huang; Jimmy Lin; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2006

4.  Information Extraction of Behavior Change Intervention Descriptions.

Authors:  Debasis Ganguly; Yufang Hou; Le A A Deleris; Francesca Bonin
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2019-05-06

5.  node2vec: Scalable Feature Learning for Networks.

Authors:  Aditya Grover; Jure Leskovec
Journal:  KDD       Date:  2016-08

6.  A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature.

Authors:  Benjamin Nye; Junyi Jessy Li; Roma Patel; Yinfei Yang; Iain J Marshall; Ani Nenkova; Byron C Wallace
Journal:  Proc Conf Assoc Comput Linguist Meet       Date:  2018-07

7.  Automatic classification of sentences to support Evidence Based Medicine.

Authors:  Su Nam Kim; David Martinez; Lawrence Cavedon; Lars Yencken
Journal:  BMC Bioinformatics       Date:  2011-03-29       Impact factor: 3.169

Review 8.  To Embed or Not: Network Embedding as a Paradigm in Computational Biology.

Authors:  Walter Nelson; Marinka Zitnik; Bo Wang; Jure Leskovec; Anna Goldenberg; Roded Sharan
Journal:  Front Genet       Date:  2019-05-01       Impact factor: 4.599

Review 9.  A Comprehensive Survey on Graph Neural Networks.

Authors:  Zonghan Wu; Shirui Pan; Fengwen Chen; Guodong Long; Chengqi Zhang; Philip S Yu
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2021-01-04       Impact factor: 10.451

10.  BioBERT: a pre-trained biomedical language representation model for biomedical text mining.

Authors:  Jinhyuk Lee; Wonjin Yoon; Sungdong Kim; Donghyeon Kim; Sunkyu Kim; Chan Ho So; Jaewoo Kang
Journal:  Bioinformatics       Date:  2020-02-15       Impact factor: 6.937

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