Literature DB >> 35308900

Gene-Based Analysis Reveals Sex-Specific Genetic Risk Factors of COPD.

Jaehyun Joo1, Blanca Himes1.   

Abstract

Sex-specific differences have been noted among people with chronic obstructive pulmonary disease (COPD), but whether these differences are attributable to genetic variation is poorly understood. The availability of large biobanks with deeply phenotyped subjects such as the UK Biobank enables the investigation of sex-specific genetic associations that may provide new insights into COPD risk factors. We performed sex-stratified genome-wide association studies (GWAS) of COPD (male: 12,958 cases and 95,631 controls; female: 11,311 cases and 123,714 controls) and found that while most associations were shared between sexes, several regions had sex-specific contributions, including respiratory viral infection-related loci in/near C5orf56 and PELI1. Using the newly developed R package 'snpsettest', we performed gene-based association tests and identified gene-level sex-specific associations, including C5orf56 on 5q31.1, CFDP1/TMEM170A/CHST6 on 16q23.1 and ASTN2/TRIM32 on 9q33.1. Our results identified promising genes to pursue in functional studies to better understand sexual dimorphism in COPD. ©2021 AMIA - All rights reserved.

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Year:  2022        PMID: 35308900      PMCID: PMC8861659     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  41 in total

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2.  Trait Insights Gained by Comparing Genome-Wide Association Study Results using Different Chronic Obstructive Pulmonary Disease Definitions.

Authors:  Jaehyun Joo; Brian D Hobbs; Michael H Cho; Blanca E Himes
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2020-05-30

3.  Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.

Authors:  Brian D Hobbs; Kim de Jong; Maxime Lamontagne; Yohan Bossé; Nick Shrine; María Soler Artigas; Louise V Wain; Ian P Hall; Victoria E Jackson; Annah B Wyss; Stephanie J London; Kari E North; Nora Franceschini; David P Strachan; Terri H Beaty; John E Hokanson; James D Crapo; Peter J Castaldi; Robert P Chase; Traci M Bartz; Susan R Heckbert; Bruce M Psaty; Sina A Gharib; Pieter Zanen; Jan W Lammers; Matthijs Oudkerk; H J Groen; Nicholas Locantore; Ruth Tal-Singer; Stephen I Rennard; Jørgen Vestbo; Wim Timens; Peter D Paré; Jeanne C Latourelle; Josée Dupuis; George T O'Connor; Jemma B Wilk; Woo Jin Kim; Mi Kyeong Lee; Yeon-Mok Oh; Judith M Vonk; Harry J de Koning; Shuguang Leng; Steven A Belinsky; Yohannes Tesfaigzi; Ani Manichaikul; Xin-Qun Wang; Stephen S Rich; R Graham Barr; David Sparrow; Augusto A Litonjua; Per Bakke; Amund Gulsvik; Lies Lahousse; Guy G Brusselle; Bruno H Stricker; André G Uitterlinden; Elizabeth J Ampleford; Eugene R Bleecker; Prescott G Woodruff; Deborah A Meyers; Dandi Qiao; David A Lomas; Jae-Joon Yim; Deog Kyeom Kim; Iwona Hawrylkiewicz; Pawel Sliwinski; Megan Hardin; Tasha E Fingerlin; David A Schwartz; Dirkje S Postma; William MacNee; Martin D Tobin; Edwin K Silverman; H Marike Boezen; Michael H Cho
Journal:  Nat Genet       Date:  2017-02-06       Impact factor: 38.330

4.  Gender differences in the management and experience of Chronic Obstructive Pulmonary Disease.

Authors:  Louise Watson; Jorgen Vestbo; Dirkje S Postma; Marc Decramer; Stephen Rennard; Victor A Kiri; Paul A Vermeire; Joan B Soriano
Journal:  Respir Med       Date:  2004-12       Impact factor: 3.415

5.  Gender and COPD in patients attending a pulmonary clinic.

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Journal:  Chest       Date:  2005-10       Impact factor: 9.410

6.  An atlas of genetic associations in UK Biobank.

Authors:  Oriol Canela-Xandri; Konrad Rawlik; Albert Tenesa
Journal:  Nat Genet       Date:  2018-10-22       Impact factor: 38.330

7.  EGFR activation suppresses respiratory virus-induced IRF1-dependent CXCL10 production.

Authors:  April Kalinowski; Iris Ueki; Gundula Min-Oo; Eric Ballon-Landa; David Knoff; Benjamin Galen; Lewis L Lanier; Jay A Nadel; Jonathan L Koff
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2014-05-16       Impact factor: 5.464

8.  Ventilatory function as a predictor of mortality in lifelong non-smokers: evidence from large British cohort studies.

Authors:  Ramyani P Gupta; David P Strachan
Journal:  BMJ Open       Date:  2017-07-12       Impact factor: 2.692

9.  An atlas of genetic correlations across human diseases and traits.

Authors:  Brendan Bulik-Sullivan; Hilary K Finucane; Verneri Anttila; Alexander Gusev; Felix R Day; Po-Ru Loh; Laramie Duncan; John R B Perry; Nick Patterson; Elise B Robinson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-09-28       Impact factor: 38.330

10.  Genome-Wide Gene-by-Smoking Interaction Study of Chronic Obstructive Pulmonary Disease.

Authors:  Woori Kim; Dmitry Prokopenko; Phuwanat Sakornsakolpat; Brian D Hobbs; Sharon M Lutz; John E Hokanson; Louise V Wain; Carl A Melbourne; Nick Shrine; Martin D Tobin; Edwin K Silverman; Michael H Cho; Terri H Beaty
Journal:  Am J Epidemiol       Date:  2021-05-04       Impact factor: 4.897

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  1 in total

1.  Genome-wide association study in minority children with asthma implicates DNAH5 in bronchodilator responsiveness.

Authors:  Jaehyun Joo; Angel C Y Mak; Shujie Xiao; Patrick M Sleiman; Donglei Hu; Scott Huntsman; Celeste Eng; Mengyuan Kan; Avantika R Diwakar; Jessica A Lasky-Su; Scott T Weiss; Joanne E Sordillo; Ann C Wu; Michelle Cloutier; Glorisa Canino; Erick Forno; Juan C Celedón; Max A Seibold; Hakon Hakonarson; L Keoki Williams; Esteban G Burchard; Blanca E Himes
Journal:  Sci Rep       Date:  2022-07-22       Impact factor: 4.996

  1 in total

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