Literature DB >> 35306892

Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant Rumex hastatulus.

Joanna L Rifkin1, Solomiya Hnatovska1, Meng Yuan1, Bianca M Sacchi1, Baharul I Choudhury1,2, Yunchen Gong3, Pasi Rastas4, Spencer C H Barrett1, Stephen I Wright1,3.   

Abstract

There is growing evidence from diverse taxa for sex differences in the genomic landscape of recombination, but the causes and consequences of these differences remain poorly understood. Strong recombination landscape dimorphism between the sexes could have important implications for the dynamics of sex chromosome evolution because low recombination in the heterogametic sex can favour the spread of sexually antagonistic alleles. Here, we present a sex-specific linkage map and revised genome assembly of Rumex hastatulus and provide the first evidence and characterization of sex differences in recombination landscape in a dioecious plant. We present data on significant sex differences in recombination, with regions of very low recombination in males covering over half of the genome. This pattern is evident on both sex chromosomes and autosomes, suggesting that pre-existing differences in recombination may have contributed to sex chromosome formation and divergence. Our analysis of segregation distortion suggests that haploid selection due to pollen competition occurs disproportionately in regions with low male recombination. We hypothesize that sex differences in the recombination landscape have contributed to the formation of a large heteromorphic pair of sex chromosomes in R. hastatulus, but more comparative analyses of recombination will be important to investigate this hypothesis further. This article is part of the theme issue 'Sex determination and sex chromosome evolution in land plants'.

Entities:  

Keywords:  dioecy; evolution; gametophytic competition; heterochiasmy; recombination; sex chromosomes

Mesh:

Year:  2022        PMID: 35306892      PMCID: PMC8935318          DOI: 10.1098/rstb.2021.0226

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.671


  55 in total

1.  Evolutionary potential for genomic islands of sexual divergence on recombining sex chromosomes.

Authors:  Sarah P Otto
Journal:  New Phytol       Date:  2019-08-24       Impact factor: 10.151

2.  Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus.

Authors:  Josh Hough; Jesse D Hollister; Wei Wang; Spencer C H Barrett; Stephen I Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-13       Impact factor: 11.205

3.  LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons.

Authors:  Shujun Ou; Ning Jiang
Journal:  Plant Physiol       Date:  2017-12-12       Impact factor: 8.340

4.  Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant Rumex hastatulus.

Authors:  Joanna L Rifkin; Solomiya Hnatovska; Meng Yuan; Bianca M Sacchi; Baharul I Choudhury; Yunchen Gong; Pasi Rastas; Spencer C H Barrett; Stephen I Wright
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-03-21       Impact factor: 6.671

5.  Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes.

Authors:  Laurène Giraut; Matthieu Falque; Jan Drouaud; Lucie Pereira; Olivier C Martin; Christine Mézard
Journal:  PLoS Genet       Date:  2011-11-03       Impact factor: 5.917

6.  Recombination difference between sexes: a role for haploid selection.

Authors:  Thomas Lenormand; Julien Dutheil
Journal:  PLoS Biol       Date:  2005-02-22       Impact factor: 8.029

7.  The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster.

Authors:  José L Campos; Daniel L Halligan; Penelope R Haddrill; Brian Charlesworth
Journal:  Mol Biol Evol       Date:  2014-01-30       Impact factor: 16.240

8.  A neutral model for the loss of recombination on sex chromosomes.

Authors:  Daniel L Jeffries; Jörn F Gerchen; Mathias Scharmann; John R Pannell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-07-12       Impact factor: 6.237

9.  LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons.

Authors:  David Ellinghaus; Stefan Kurtz; Ute Willhoeft
Journal:  BMC Bioinformatics       Date:  2008-01-14       Impact factor: 3.169

10.  Widespread Recombination Suppression Facilitates Plant Sex Chromosome Evolution.

Authors:  Joanna L Rifkin; Felix E G Beaudry; Zoë Humphries; Baharul I Choudhury; Spencer C H Barrett; Stephen I Wright
Journal:  Mol Biol Evol       Date:  2021-03-09       Impact factor: 16.240

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  1 in total

1.  Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant Rumex hastatulus.

Authors:  Joanna L Rifkin; Solomiya Hnatovska; Meng Yuan; Bianca M Sacchi; Baharul I Choudhury; Yunchen Gong; Pasi Rastas; Spencer C H Barrett; Stephen I Wright
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-03-21       Impact factor: 6.671

  1 in total

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