| Literature DB >> 35298541 |
Deeksha Salaria1, Rajan Rolta1, Jyoti Mehta1, Oladoja Awofisayo2, Olatomide A Fadare3, Baljinder Kaur4, Balvir Kumar5, Renato Araujo da Costa6, Shikha Rangra Chandel7, Neha Kaushik8, Eun Ha Choi9, Nagendra Kumar Kaushik9.
Abstract
Human papillomavirus (HPV) induced cervical cancer is becoming a major cause of mortality in women. The present research aimed to identify the natural inhibitors of HPV-18 E1 protein (1R9W) from Himalayan herbs with lesser toxicity and higher potency. In this study, one hundred nineteen phytoconstituents of twenty important traditional medicinal plants of Northwest Himalayas were selected for molecular docking with the target protein 1R9W of HPV-18 E1 Molecular docking was performed by AutoDock vina software. ADME/T screening of the bioactive phytoconstituents was done by SwissADME, admetSAR, and Protox II. A couple of best protein-ligand complexes were selected for 100 ns MD simulation. Molecular docking results revealed that among all the selected phytoconstituents only thirty-five phytoconstituents showed the binding affinity similar or more than the standard anti-cancer drugs viz. imiquimod (-6.1 kJ/mol) and podofilox (-6.9 kJ/mol). Among all the selected thirty-five phytoconstituents, eriodictyol-7-glucuronide, stigmasterol, clicoemodin and thalirugidine showed the best interactions with a docking score of -9.1, -8.7, -8.4, and -8.4 kJ/mol. Based on the ADME screening, only two phytoconstituents namely stigmasterol and clicoemodin selected as the best inhibitor of HPV protein. MD simulation study also revealed that stigmasterol and clicoemodin were stable inside the binding pocket of 1R9W, Stigmasterol and clicoemodin can be used as a potential investigational drug to cure HPV infections.Entities:
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Year: 2022 PMID: 35298541 PMCID: PMC8929605 DOI: 10.1371/journal.pone.0265420
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Ethno-medicinal uses and plant sources of selected phytoconstituents.
| Major Phytoconstituents Selected for anti-carcinogenicity | Source of Phytoconstituents | Ethno-medicinal uses |
|---|---|---|
| Alizarin, Aloe-emodin, Anthraquinone, Anthrarufin, Anthrone, Chryophanol, Clicoemodin, Dantron, Emodin, Gallic acid, Juglone, Physicon, Piceatannol, Quinizarin, Rubiadin |
| Rheumatism [ |
| 3-Octanone, 8-Prenylnaringenin, Apigenin, Apigenin-7-O-glucoside, Bornyl acetate, Camphene, Camphor, Carvacrol, Caryophyllene oxide, Catechin, Eriodictyol, Eriodictyol-7-glucuronide, Geranyl acetate, Linalool, Myrcene, Rutin, Spathulenol, Taxifolin, Thymol, Trans-Nerolidol, α-Pinene, β-Bisabolene, β-Caryophyllene, β-Pinene, δ-Cadinene. |
| Cold, flu, indigestion, hair loss treatment, diabetes, and respiratory diseases [ |
| Citral alpha, Citronellal, Geraniol, lemonene, Nerol, Terpinolene |
| Inflammation, fever, nervous disorders, pyrea, wound healing, hypertension, bone fracture [ |
| Glucomoringin, Niazinicin A, Niazinin, Pterygospermin |
| Skin infections, anxiety, asthma, wounds, fever, diarrhea, and sore throats [ |
| 8-Oxyberberine, Berberine, Jatrorrhizine, Noroxyhydrastinine, Palmatine, Thalicarpine, Thalidasine, Thalirugidine, Thalirugine, Thalisopine, Thalrugosaminine, Thalrugosidine |
| Atonic dyspepsia, edema, skin diseases, and Jaundice [ |
| Berbamine, Columbamine, Isocorydine, Lambertine, Lupeol, Oleanolic acid, Oxyberberine, Oxycanthine, Stigmasterol |
| Skin diseases, menorrhagia, diarrhoea, Jaundice, and piles [ |
| Guaiol, Piperazine, Piperine, Piperolein A, Piperolein B, Sabinene, β-caryophyllene |
| Skin diseases, Cough and cold, snake bite, and poisoning [ |
| (E)-Ajoene, (Z)-Ajoene, Allicin, Alliin, Vinyllithium |
| Skin diseases, Cough and cold [ |
| 4-terpinol, 9-epoxylignan, Camphene, Elemicin, Isoelemicin, Methoxyeugenol, Meso-dihydroguaiaretic acid, Myristicin, Sabinene, Safrole, Trimyristin |
| Hypertension, antispasmodic, diarrhea, abdominal pain, fever, and vomiting [ |
| Armatamide, Bergapten, Sesamin, Tambulin, Xanthyletin, β-Sitosterol-D-Glucoside |
| Dental problems, fever, dyspepsia, cold, cough, and abdominal pain [ |
| 3-O-b-galactopyranoside, Methyl a-L-arabinopyranoside, Sedanolide |
| Skin infection and fever [ |
| Cannabigerol, Cannabinoids, Cannabinol, Tetrahydrocannabinol |
| Intoxicant, analgesic, narcotic, stomachic, antispasmodic, anodyne, and sedative [ |
| Curcubitacine E, Pikuroside, Verbascoside |
| Improve appetite, and decoction of this with ajwain is used for the purification of blood and to cure skin infections [ |
| Isovitexin, Oleic acid, Palmitic acid |
| Dyspepsia [ |
| Artemisinin, Dihydroartemisinic acid |
| Fever, malaria cough, cold, and blood detoxifier [ |
| Bergenin, Pyrogallol |
| Excessive uterine hemorrhage, diseases of the urinary bladder, dysentery, menorrhagia, splenic enlargement, and heart diseases [ |
| Dactylorhin E |
| It is taken with milk in case of weakness [ |
| Podophyllin |
| It is given to cattle for bloating prevention [ |
| Octadecanoic acid |
| Antiseptic, antispasmodic, diuretic poultice to the eye to reduce swelling, aching rheumatic joints [ |
| Emetine |
| Respiratory & gastrointestinal illness, cough, cold, and fever [ |
The table exhibits important bioactive phytoconstituents of herbal plants their docking with HPV-18 (1R9W) and interactive amino acids.
| S.no | Phytoconstituents/Standard drug | Plant source | Docking score (-kJ/mol) | Interactive amino acids | |
|---|---|---|---|---|---|
| H- bonds | Hydrophobic interactions | ||||
| 1. | Chryophanol |
| -7 | - | ALA 213, MET 214, LYS 210, TRP 278, PHE 248, CYS 311, GLY 249 |
| 2. | Emodin | -7.1 | LYS 20 | GLY 249, PHE 248, TRP 278, CYS 311, ALA 213, MET 214 | |
| 3. | Rubiadin | -6.9 | - | GLY 249, CYS 311, TRP 278, LYS 210, PHE 248, ALA 213, MET 214 | |
| 4. | Clicoemodin | -8.4 | ASN 335, SER 337 | GLY 341, ILE 333, SER 334, GLY 332, TYR 329, GLYU 338, VAL 339, THR 343, GLN 348 | |
| 5. | Apigenin |
| -7.1 | TYR 268 | HIS 270, VAL 339, GLY 332, THR 343, GLN 348, TYR 329, ILE 347, TRP 328 |
| 6. | Catechin | -7.5 | TYR 268, TRP 328 | ILE 333, GLN 348, TYR 329, ILE 347, GLY 332, THR 343, HIS 270 | |
| 7. | Eriodictyol-7-glucuronide | -9.1 | VAL 339, LYS 259, THR 343 | ILE 333, TYR 329, HIS 270, TYR 268, GLY 332, SER 337, GLU 338 | |
| 8. | Eriodictyol | -7.5 | TYR 268 | TYR 329, ILE 347, TRP 328, GLY 332, THR 343, HIS 270, MET 340 | |
| 9. | Rutin | -8.3 | TYR 268, TRP 328, THR 343, GLY 341, SER 337, ASN 335 | HIS 270, ASP 342, GLY 332, MET 340, ILE 347, TYR 329, ILE 333, SER 334, GLU 338 | |
| 10. | Taxifolin | -7.2 | TYR 268, TRP 328 | GLN 348, THR 343, TYR 329, ILE 347, GLY 332, HIS 270, MET 340 | |
| 11. | Glucomoringin |
| -7.4 | THR 343, GLY 332, TYR 268 | TYR 329, VAL 339, ILE 333, PRO 344, HIS 270, TRP 328, ILE 347, ARG 349, GLY 341, ASP 342, GLN 348, THR 351, ILE 353 |
| 12. | Pterygospermin | -7.6 | - | VAL 323, LEU 224, TYR 327, GLY 223, LEU 326, THR 331, ARG 330 | |
| 13. | 8-Oxyberberine |
| -7.4 | - | LYA 210, ALA 213, MET 214, TRP 278, PHE 248, GLY 249, VAL 307, CYS 311, THR 310 |
| 14. | Thalicarpine | -7.9 | - | TRP 328, ILE 333, VAL 339, ILE 347, TYR 329, THR 343, GLN 348, GLY 332, TYR 268, HIS 270, MET 340, GLY 341 | |
| 15. | Thalidasine | -7.8 | ARG 287 | LEU 319, LEU 350, TYR 346, ARG 349, ARG 320, CYS 240, THR 241, ASP 242, ARG 231, LEU 267 | |
| 16. | Thalirugidine | -8.4 | - | HIS 270, ILE 347, TYR 329, TYR 268, GLN 348, THR 343, GLY 341, ASP 342, ILE 333, VAL 339, GLY 332, SER 337, GLU 338 | |
| 17. | Thalirugine | -8 | ASP 125, TYR 288 | ASP 124, TYR 123, ALA 284, SER 129, VAL 126, GLU 127, PHE 257, HIS 290, VAL 289 | |
| 18. | Thalrugosaminine | -7.8 | - | VAL 280, CYS 273, PRO 252, GLU 256, ALA 255, VAL 280, LEU 274, ASP 275, ILE 336, ASN 335 | |
| 19. | Berbamine |
| -8.3 | THR 212 | GLY 180, LEU 210, GLY 265, PRO 183, MET 205, VAL 289, ASP 216, ARG 260, ALA 261, ILE 287, ASN 121, GLY 262, ASN 213 |
| 20. | Berberine | -6.9 | THR 241, ARG 287 | CYS 240, TRP 346, GLU 345, ARG 349, LEU 319, ASP 242, ARG 320, LEU 350 | |
| 21. | Lupeol | -8.2 | ASP 228 | TYR 222, THR 331, TYR 327, ARG 330, LEU 224, VAL 323 | |
| 22. | Oleanolic acid | -8 | VAL 323 | LEU 326, ARG 330, THR 331, GLN 272, LEU 274, ILE 336, EU 224, TYR 323, TYR 222 | |
| 23. | Stigmasterol | -8.7 | - | HIS 270, TYR 268, ILE 333, VAL 339, GLY 332, TYR 329, GLN 348 | |
| 24. | Piperolein B |
| -6.9 | - | SER 334, THR 331, GLY 223, TYR 222, ARG 330, LEU 326, TYR 327, VAL 323, LEU 224 |
| 25. | 9-epoxylignan |
| -7 | GLY 341, THR 343 | MET 340, VAL 339, ILE 347, TYR 329, ILE 333, GLY 332, GLN 348 |
| 26. | Armatamide |
| -7.2 | - | LYS 210, MET 214, PRO 308, ALA 213, TRP 278, PHE 248, CYS 311, GLY 249, VAL 307, VAL 250, LEU 305, ASN 251, HIS 306 |
| 27. | β-Sitosterol-D-Glucoside | -7.7 | - | ASP 24, ARG 29, PHE 33, GLN 311, LYS 312, GLN 311, GLN 373, PHE 464, GLN 467, SER 468 | |
| 28. | 3-O-b-galactopyranoside |
| -7 | GLY 341, THR 343 | GLN 348, ILE 333, VAL 339, GLY 332, GLN 348, ILE 347, TYR 268, HIS 270, TRP 328, PRO 344 |
| 29. | Cannabigerol |
| -7.2 | - | TYR 222, GLN 272, TYR 327, LEU 326, ARG 330, VAL 323, LEU 224, ILE 336, LEU 274, THR 331 |
| 30. | Cannabinol | -7.1 | GLY 223 | LEU 326, THR 331, ARG 330, TYR 222, LEU 274, GLN 272, VAL 323, TYR 327, LEU 224 | |
| 31. | Tetrahydrocannabinol | -7.3 | - | ASP 228, GLY 223, TYR 222, VAL 323, LEU 224, TYR 327, THR 331, GLN 272, LEU 274, LEU 326, ARG 330, ILE 336 | |
| 32. | Curcubitacine E |
| -7.7 | ASP 220, SER 225 | GLY 223, LYS 219, THR 227, ALA 216, LEU 215, PHE 226 |
| 33. | Pikuroside | -7.7 | THR 343, SER 334, ASN 335, SER 337, LYS 259, VAL 339 | ILE 347, TYR 268, HIS 270, GLY 332, TYR 329, MET 340, GLU 338, GLN 263, THR 260 | |
| 34. | Verbascoside | -7.8 | THR 241, TRP 346, GLU 345, ARG 287, ASP 342 | CYS 240, ASP 242, ARG 231, PRO 344, TYR 268, GLY 341 | |
| 35. | Isovitexin |
| -7.9 | VAL 339, ASN 335, ILE 333, GLY 332 | GLU 338, SER 337, SER 334, TYR 268, THR 343, GLN 348 |
| 36. | Podofilok | Standard drugs | -6.9 | - | GLY 341, MET 340, VAL 339, HIS 270, TRP 328, TYR 329, GLY 332, THR 343, ILE 333 |
| 37. | Imiquimod | -6.1 | - | GLN 348, TYR 329, ILE 347, TRP 328, HIS 270, TYR 268, THR 343, VAL 339, GLY 332 | |
Fig 12D structures of active phytoconstituents in complexation with 1R9W: where, (A) Thalirugonidine, (B) Clicoemodin, (C) Eriodictyol-7, and (D) Stigmasterol.
Fig 23D structure of active phytoconstituents in complex with 1R9W: (A) Thalirugonidine, (B) Clicoemodin, (C) Eriodictyol-7, and (D) Stigmasterol.
Pharmacokinetics and toxicity prediction of the active phytoconstituents of Himalayan herbs.
| Phyto-compounds | SWISS ADME | Admet SAR | Protox-II | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |
| 3-O-b-galactopyranoside | -2.09 | Soluble | Low | No | No | 182.4 | No | - | + | - | Non-carcinogen | -2.93 | 2.5194 (III) | 500 (class 5) | Inactive | Inactive | Active | Inactive | Active |
| 8-Oxyberberine | 3.05 | Soluble | High | Yes | Yes | 58.92 | No | + | + | + | Non-carcinogen | -2.79 | 2.40(III) | 400 (class 4) | Inactive | Active | Active | Active | Active |
| 9-epoxylignan | 2.99 | Moderately soluble | High | Yes | Yes | 77.38 | No | + | + | + | Non-carcinogen | -2.73 | 2.48 (III) | 2000 (class 4) | Inactive | Inactive | Active | Inactive | Inactive |
| Apigenin | 2.11 | Soluble | High | Yes | Yes | 90.9 | Yes | + | - | - | Non-carcinogen | -2.77 | 1.14(III) | 2500 (class 5) | Inactive | Inactive | Inactive | Inactive | Inactive |
| Armatamide | 3.26 | Soluble | High | Yes | Yes | 56.79 | No | + | + | + | Non-carcinogen | -3.30 | 1.74 (III) | 1000 (class4) | Inactive | Active | Active | Active | Inactive |
| Berbamine | 5.16 | Poorly soluble | High | Yes | Yes | 72.86 | No | + | + | + | Non-carcinogen | -2.63 | 2.82 (III) | 1700 (class 4) | Inactive | Inactive | Active | Active | Inactive |
| Berberine | 2.53 | Moderately soluble | High | Yes | Yes | 40.8 | No | + | + | + | Non-carcinogen | -2.97 | 1.54(III) | 200 (class3) | Inactive | Active | Active | Active | Active |
| Cannabigerol | 5.74 | Poorly soluble | High | Yes | Yes | 40.46 | No | + | + | + | Non-carcinogen | -3.42 | 2.52(III) | 500 (class4) | Inactive | Inactive | Inactive | Inactive | Inactive |
| Cannabinol | 5.21 | Moderately soluble | High | Yes | Yes | 29.46 | No | + | + | + | Non-carcinogen | -3.97 | 2.99 (III) | 13500 (class6) | Inactive | Inactive | Active | Inactive | Inactive |
| Catechin | 0.85 | Soluble | High | Yes | Yes | 110.3 | Yes | + | - | - | Non-carcinogen | -3.10 | 2.14 (IV) | 10000 (class6) | Inactive | Inactive | Inactive | Inactive | Inactive |
| Chrysophanol | 2.38 | Moderately soluble | High | Yes | Yes | 74.6 | No | - | - | + | Non-carcinogen | -3.12 | 2.91(II) | 1190 (class4) | Active | Inactive | Active | In active | In active |
| Clicoemodin | 0.19 | Soluble | High | Yes | No | 178.9 | No | + | - | - | Non-carcinogen | -2.36 | 2.82(III) | 3000 (class5) | Inactive | Inactive | Active | Active | Inactive |
| CurcubitacineE | 3.47 | Moderately soluble | Low | Yes | Yes | 138.2 | No | + | + | - | Non-carcinogen | -4.50 | 4.81 (I) | 340 (class4) | Inactive | Active | Active | Inactive | Inactive |
| Emodin | 1.87 | Soluble | High | Yes | Yes | 94.83 | Yes | + | - | + | Non-carcinogen | -3.01 | 2.56(III) | 5000 (class5) | Inactive | In active | In active | Active | Inactive |
| Eriodictyol-7-glucuronide | -0.37 | Soluble | Low | No | No | 203.4 | No | + | - | - | Non-carcinogen | -3.71 | 1.85 (II) | 2300 (class5) | Inactive | Inactive | Active | Inactive | Inactive |
| Eriodictyol | 1.45 | Soluble | High | Yes | Yes | 107.2 | Yes | + | - | - | Non-carcinogen | -3.44 | 2.41 (II) | 2000 (class4) | Inactive | Active | Inactive | Inactive | Inactive |
| Glucomoringin | -1.82 | Very soluble | Low | No | No | 278.9 | No | - | + | - | Non-carcinogen | -3.16 | 2.56(III) | 3750 (class5) | Inactive | Inactive | Active | Inactive | Inactive |
| Isovitexin | 0.05 | Soluble | Low | Yes | No | 181.0 | No | + | - | - | Non-carcinogen | -2.39 | 2.81(IV) | 159 (class3) | Inactive | Inactive | Inactive | Active | Inactive |
| Lupeol | 7.31 | Poorly soluble | Low | Yes | Yes | 20.23 | No | + | + | - | Non-carcinogen | -4.41 | 3.85 (III) | 2000 (class4) | Inactive | Inactive | Active | Inactive | Inactive |
| Oleanolic acid | 6.06 | Poorly soluble | Low | Yes | Yes | 57.53 | No | + | - | + | Non-carcinogen | -4.38 | 2.70(III) | 2000 (class4) | Active | Active | Active | Inactive | Inactive |
| Pikuroside | -1.53 | Very soluble | Low | No | No | 214.0 | No | + | - | - | Non-carcinogen | -1.98 | 2.87(III) | 2260 (class5) | Inactive | Inactive | Active | Inactive | Inactive |
| Piperolein B | 4.47 | Soluble | High | Yes | Yes | 38.77 | No | + | + | + | Non-carcinogen | -3.51 | 1.68(III) | 1000 (class4) | Inactive | Active | Active | Inactive | Inactive |
| Pterygospermin | 3.75 | Moderately soluble | High | Yes | Yes | 89.12 | No | + | + | - | Non-carcinogen | -4.32 | 2.41(III) | 898 (class4) | Inactive | Inactive | Inactive | Inactive | Inactive |
| Rubiadin | 2.23 | Soluble | High | Yes | Yes | 74.6 | Yes | + | - | + | Non-carcinogen | -3.11 | 2.09(III) | 7000 (class5) | Inactive | Inactive | Active | Active | Inactive |
| Rutin | -1.12 | Soluble | Low | No | No | 269.4 | No | + | - | - | Non-carcinogen | -2.77 | 2.59(III) | 5000 (class5) | Inactive | Inactive | Active | Inactive | Inactive |
| Stigmasterol | 6.96 | Poorly soluble | Low | Yes | Yes | 20.23 | No | + | + | + | Non-carcinogen | -4.70 | 3.28 (I) | 890 (class4) | Inactive | Inactive | Active | Inactive | Inactive |
| Taxifolin | 0.63 | Soluble | High | Yes | Yes | 127.4 | Yes | + | - | - | Non-carcinogen | -2.999 | 3.26(II) | 2000 (class4) | Inactive | Active | Inactive | Active | Inactive |
| Tetrahydrocannabinol | 5.28 | Poorly soluble | High | Yes | Yes | 29.46 | No | + | + | + | Non-carcinogen | -4.321 | 3.61(III) | 482 (class4) | Inactive | Inactive | Active | Inactive | Inactive |
| Thalicarpine | 5.68 | Poorly soluble | High | Yes | Yes | 80.32 | No | + | + | - | Non-carcinogen | -3.26 | 2.37(III) | 1500 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Thalidasine | 5.34 | Poorly soluble | High | Yes | No | 71.09 | No | + | + | - | Non-carcinogen | -2.81 | 2.41(III) | 1700 (class4) | Inactive | Active | Active | Active | Inactive |
| Thalirugidine | 5.2 | Poorly soluble | High | Yes | Yes | 102.3 | No | + | + | - | Non-carcinogen | -2.83 | 2.38(III) | 1180 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Thalirugine | 5.26 | Poorly soluble | High | Yes | No | 93.09 | No | + | + | - | Non-carcinogen | -2.83 | 2.25(III) | 1180 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Thalisopine | 5.09 | Poorly soluble | High | Yes | Yes | 82.09 | No | + | + | + | Non-carcinogen | -2.50 | 3.09 (III) | 1700 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Thalrugosaminine | 5.43 | Poorly soluble | High | Yes | Yes | 71.09 | No | + | + | + | Non-carcinogen | -2.86 | 2.53 (III) | 1700 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Thalrugosidine | 5.05 | Poorly soluble | High | Yes | Yes | 82.09 | No | + | + | + | Non-carcinogen | -2.63 | 2.55(III) | 1700 (class4) | Inactive | Inactive | Active | Active | Inactive |
| Verbascoside | -0.43 | Soluble | Low | No | Yes | 245.29 | No | + | - | - | Non-carcinogen | -1.67 | 2.79(III) | 5000 (class5) | Inactive | Inactive | Active | Inactive | Inactive |
| β-Sitosterol Glucoside | 5.51 | Moderately soluble | Low | Yes | Yes | 99.8 | No | + | + | - | Non-carcinogen | -4.40 | 2.91 (III) | 1190 (class 4) | Active | Inactive | Active | In active | In active |
| Podofilox | 2.27 | Soluble | High | Yes | Yes | 92.98 | No | + | + | + | Non-carcinogen | -3.12 | 3.00(III) | 100 (class 3) | Inactive | Active | Active | Inactive | Inactive |
| Imiquimod | 2.34 | Soluble | High | Yes | Yes | 56.73 | No | + | + | + | Non-carcinogen | -4.03 | 2.09 (III) | 300 (class3) | Inactive | Active | Inactive | Active | Inactive |
where, 1-Consensus log P o/w, 2-water solubility, 3-GI-absorption, 4-Lipinski rule, 5- Veber’s rule, 6-TPSA (Å2), 7-Lead likeness, 8-Human intestinal absorption, 9-Blood brain barrier penetration, 10-Caco-2 cell permeability, 11-Carcinogens, 12-Aquatic & terrestrial toxicity (Log S value), 13-Rate acute toxicity (LD50), 14-LD50,(mg/kg), 15-Organ toxicity hepatotoxicity, 16-Carcinogenicity, 17-Immunotoxicity, 18-Mutagenicity, 19-Cytotoxicity, “+” Positive and “-” Negative.
Fig 3RMSD of active phytoconstituents in complexation with 1R9W: A- Stigmasterol and B-Clicoemodin.
Fig 4RMSF of active phytoconstituents in complexation with 1R9W.
Fig 5SASA of active phytoconstituents in complex with 1R9W: Black color is indicating clicoemodin and red color indicates stigmasterol.
Fig 6Radius of gyration of active phytoconstituents in complex with 1R9W: Black color is indicating clicoemodin and red color indicates stigmasterol.
Binding free energies and their components for the two complexes: Clicoemodin-1R9W and stigmasterol-1R9W using the MM-PBSA method.
The energy components are in kcal/mol.
| Complex | Clicoemodin -2R5K | Stigmasterol -2R5K |
|---|---|---|
| Δ | − 45.61 | − 33.09 |
| Δ | − 39.38 | − 10.88 |
| Δ | 63.38 | 29.51 |
| Δ | -4.02 | -3.67 |
| Δ | − 25.63 | − 18.13 |